Taxonomy browser (Bacteroides thetaiotaomicron)

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Taxonomy browser (Bacteroides thetaiotaomicron)

Bacteroides thetaiotaomicron

Taxonomy ID: 818 (for references in articles please use NCBI:txid818)

current name

Bacteroides thetaiotaomicron (Distaso 1912) Castellani and Chalmers 1919 (Approved Lists 1980) emend. Hahnke et al. 2016, nom. approb.¹⁾

type strain of Bacteroides thetaiotaomicron: ATCC :29148, CCUG :10774, CIP:104206, DSM :2079, JCM :5827, NCTC :10582, VPI:5482

homotypic synonym:

"Bacillus thetaiotaomicron" Distaso 1912, effective name²⁾

"Sphaerocillus thetaiotaomicron" (Distaso 1912) Prevot 1938, effective name³⁾

"Pseudobacterium thetaiotaomicron" (Distaso 1912) Krasil'nikov 1949, effective name⁴⁾

"Bacteroides fragilis subsp. thetaiotaomicron" (Distaso 1912) Holdeman and Moore 1970, effective name⁵⁾

includes:

Bacteroides sp. 1_1_6

bacterium NLAE-zl-C523

bacterium NLAE-zl-C579

bacterium NLAE-zl-G288

bacterium NLAE-zl-H207

bacterium NLAE-zl-H463

bacterium NLAE-zl-H492

bacterium NLAE-zl-P32

bacterium NLAE-zl-P699

NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)

Lineage( full ): cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	145,870	144,984	243
Protein	1,522,500	1,507,244	-
Structure	511	172	-
Genome	2	1	-
Popset	15	15	-
Conserved Domains	7	6	-
GEO Datasets	1,453	588	-
PubMed Central	5,584	5,584	-
Gene	15,329	10,221	-
SRA Experiments	2,374	1,962	-
GEO Profiles	6,601	6,601	-
Protein Clusters	2,860	2,860	-
Identical Protein Groups	287,210	285,799	-
BioProject	251	219	-
BioSample	4,568	4,150	1,668
Assembly	1,244	1,238	-
PubChem BioAssay	275	274	-
Taxonomy	6	1	-

Notes:

1) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
5) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).

Comments and References:

Castellani A & Chalmers AJ (1919)

Castellani, A., and Chalmers, A.J. Manual of Tropical Medicine, 3rd ed. (1919). Williams Wood and Co., New York. [No PubMed abstract available.]

Cato EP & Johnson JL (1976)

Cato, E.P., and Johnson, J.L. "Reinstatement of species rank for Bacteroides fragilis, B. ovatus, B. distasonis, B. thetaiotaomicron, and B. vulgatus: Designation of neotype strains for Bacteroides fragilis (Veillon and Zuber) Castellani and Chalmers and Bacteroides thetaiotaomicron (Distaso) Castellani and Chalmers." Int. J. Syst. Bacteriol. (1976) 26:230-237. [No PubMed record available.]

Distaso A (1912)

Distaso, A. "Contribution a l'etude sur l'intoxication intestinale." Zentralbl. Bakteriol. Parasitenkd. Infektionskr. Hyg. Abt. I (1912) 62:433-468. [No PubMed record available.]

Hahnke RL et al. (2016)

Hahnke, R.L., Meier-Kolthoff, J.P., García-López, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., and Göker, M. "Genome-based taxonomic classification of Bacteroidetes." Front. Microbiol. (2016) 7:2003.

Holdeman LV & Moore WEC (1970b)

Holdeman, L.V., and Moore, W.E.C. "Bacteroides." In: E.P. Cato, C.S. Cummins, L.V. Holdeman, J.L. Johnson, W.E.C. Moore, R.M. Smibert, and L.DS. Smith (eds.), Outline of Clinical Methods in Anaerobic Bacteriology, 2nd revision, Virginia Polytechnic Institute, Anaerobe Laboratory, Blacksburg, Virginia, (1970). pp. 33-44. [No PubMed record available.]

List of Changes in Taxonomic Opinion No. 26 (2017)

"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67(7):2081-2086.

Krasil'nikov NA (1949)

Krasil'nikov, N.A.: Guide to the Bacteria and Actinomycetes [Opredelitelv Bakterii i Actinomicetov], (1949). Akad. Nauk SSSR, Moscow, pp. 1-830. [No PubMed record available.]

Prévot AR (1938)

Prévot, A.R. "Etudes de systematique bacterienne." Ann. Inst. Pasteur (Paris) (1938) 60:285-307. [No PubMed record available.]

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Bacteroides thetaiotaomicron	meta-databases	BacDive
6 records from this provider	organism-specific	BioCyc
dryaddb	supplemental materials	Dryad Digital Repository
Bacteroides thetaiotaomicron (Distaso 1912) Castellani and Chalmers 1919 (Approved Lists 1980)	taxonomy/phylogenetic	Encyclopedia of life
GOLD: 30 Organisms	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Bacteroides thetaiotaomicron	culture/stock collections	Global Catalogue of Microorganisms
41 records from this provider	organism-specific	Integrated Microbial Genomes
Bacteroides thetaiotaomicron \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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