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Taxonomy browser (Ruegeria atlantica)

Ruegeria atlantica

Taxonomy ID: 81569 (for references in articles please use NCBI:txid81569)
current name
Ruegeria atlantica (Rüger and Höfle 1992) Uchino et al. 1999
homotypic synonym:
Ruegeria atlantica (Rüger and Höfle 1992) Uchino et al. 1999 emend. Muramatsu et al. 2007, emended name
Ruegeria atlantica (Rüger and Höfle 1992) Uchino et al. 1999 emend. Yi et al. 2007, emended name
Ruegeria atlantica (Rüger and Höfle 1992) Uchino et al. 1999 emend. Vandecandelaere et al. 2008, emended name
basionym:
Agrobacterium atlanticum Rüger and Höfle 1992
type strain of Agrobacterium atlanticum: personal::1480, ATCC:700000, CIP:105975, DSM:5823, IAM:14463, IFO:15792, NBRC:15792, JCM:21234, CECT:4292
NCBI BLAST name: a-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Ruegeria meteori (Rüger and Höfle 1992) Hördt et al. 2020 in [Validation List No. 194 (2020), Hördt A et al. (2020)]
basionym:
Agrobacterium meteori Rüger and Höfle 1992
type strain of Agrobacterium meteori: personal::1513, DSM:5824, IAM:14464
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Ruegeria
   Entrez records   
Database name Direct links Links from type
Nucleotide 1,255 157
Protein 63,512 -
Genome 1 -
Popset 26 -
PubMed Central 52 -
Gene 9,177 -
SRA Experiments 6 -
Identical Protein Groups 63,379 -
BioProject 12 -
BioSample 29 3
Assembly 21 -
PubChem BioAssay 1 -
Taxonomy 1 -

Comments and References:
Validation List No. 194 (2020), PubMed: abstract
Validation List No. 194: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2020) 70(7):4043-4049.
Hördt A et al. (2020), doi: 10.3389/fmicb.2020.00468, PubMed: abstract
Hördt, A., López, M.G., Meier-Kolthoff, J.P., Schleuning, M., Weinhold, L.-M., Tindall, B.J., Gronow, S., Kyrpides, N.C., Woyke, T., and Göker, M. "Analysis of 1,000+ type-strain genomes substantially improves taxonomic classification of Alphaproteobacteria." Front. Microbiol. (2020) 11:468.
Associate Editor IJSB (1999) (Agrobacterium meteori)
Associate Editor, IJSB "Validation List no. 68 (footnote ¶)." Int. J. Syst. Bacteriol. (1999) 49:1-3.
Muramatsu Y et al. (2007)
Muramatsu, Y., Uchino, Y., Kasai, H., Suzuki, K.-I., and Nakagawa, Y. "Ruegeria mobilis sp. nov., a new member of Alphaproteobacteria isolated in Japan and Palau." Int. J. Syst. Evol. Microbiol. (2007) 57:1304-1309.
Rüger HJ & Höfle MG (1992)
Rüger, H.J., and Höfle, M.G. "Marine star-shaped-aggregate-forming bacteria: Agrobacterium atlanticum sp. nov.; Agrobacterium meteori sp. nov.; Agrobacterium ferrugineum sp. nov., nom. rev.; Agrobacterium gelatinovorum sp. nov., nom. rev.; and Agrobacterium stellulatum sp. nov., nom. rev." Int. J. Syst. Bacteriol. (1992) 42:133-143.
Uchino Y et al. (1998)
Uchino, Y., Hirata, A., Yokota, A., and Sugiyama, J. "Reclassification of marine Agrobacterium species: proposals of Stappia stellulata gen. nov., comb. nov., Stappia aggregata sp. nov., nom. rev., Ruegeria atlantica gen. nov., comb. nov., Ruegeria gelatinovora comb. nov., Ruegeria algicola comb. nov., and Ahrensia kieliense gen. nov., sp. nov., nom. rev." J. Gen. Appl. Microbiol. (1998) 44:201-210.
VALIDATION LIST No. 68 (1999)
VALIDATION LIST No. 68. Int. J. Syst. Bacteriol. (1999) 49:1-3.
Vandecandelaere I et al. (2008b)
Vandecandelaere, I., Nercessian, O., Segaert, E., Achouak, W., Faimali, M., and Vandamme, P. "Ruegeria scottomollicae sp. nov., isolated from a marine electroactive biofilm." Int. J. Syst. Evol. Microbiol. (2008) 58(12):2726-2733.
Yi H et al. (2007b)
Yi, H., Lim, Y.W., and Chun, J. "Taxonomic evaluation of the genera Ruegeria and Silicibacter: a proposal to transfer the genus Silicibacter Petursdottir and Kristjansson 1999 to the genus Ruegeria Uchino et al. 1999." Int. J. Syst. Evol. Microbiol. (2007) 57(4):815-819.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Ruegeria atlantica meta-databases BacDive
2 records from this provider organism-specific BioCyc
GOLD: 2 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Ruegeria atlantica culture/stock collections Global Catalogue of Microorganisms
7 records from this provider organism-specific Integrated Microbial Genomes
Ruegeria atlantica Uchino, Hirata, Yokota & Sugiyama, 1998 taxonomy/phylogenetic Ocean Biogeographic Information System
Ruegeria atlantica (T) | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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