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Taxonomy browser (Atribacterota)

Atribacterota

Taxonomy ID: 67818 (for references in articles please use NCBI:txid67818)
current name
Atribacterota Katayama et al. 2021 in [Oren A & Garrity GM (2021)]
homotypic synonym:
"Atribacterota" Katayama et al. 2020, effective name 1) in [Katayama T et al. (2020)]
vernacular name:
candidate division JS1
candidate division OP9
equivalent:
candidate division Obsidian Pool 9
NCBI BLAST name: bacteria
Rank: phylum
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Candidatus Atribacteria" Dodsworth et al. 2013, candidatus name 2)
Lineage( full )
cellular organisms; Bacteria
   Entrez records   
Database name Subtree links Direct links
Nucleotide 8,281 -
Protein 39,374 -
Genome 44 -
Popset 32 30
PubMed Central 313 57
SRA Experiments 88 11
Protein Clusters 3 -
Identical Protein Groups 169,341 -
BioProject 49 1
BioSample 626 11
Assembly 230 -
Taxonomy 188 1

Notes:

Comments and References:
Oren A & Garrity GM (2021), PubMed: abstract
Oren, A., and Garrity, G.M. "Valid publication of the names of forty-two phyla of prokaryotes." Int. J. Syst. Evol. Microbiol. (2021) 71(10):005056.
Katayama T et al. (2020), doi: 10.1038/s41467-020-20149-5, PubMed: abstract
Katayama, T., Nobu, M.K., Kusada, H., Meng, X.-Y., Hosogi, N., Uematsu, K., Yoshioka, H., Kamagata, Y., and Tamaki, H. "Isolation of a member of the candidate phylum 'Atribacteria' reveals a unique cell membrane structure." Nat. Commun. (2020) 11(1):6381.
Dalevi D et al. (2001)
Dalevi, D., Hugenholtz, P., and Blackall, L.L. "A multiple-outgroup approach to resolving division-level phylogenetic relationships using 16S rDNA data." Int. J. Syst. Evol. Microbiol. (2001) 51:385-391.
Dodsworth JA et al. (2013)
Dodsworth, J.A., Blainey, P.C., Murugapiran, S.K., Swingley, W.D., Ross, C.A., Tringe, S.G., Chain, P.S., Scholz, M.B., Lo, C.C., Raymond, J., Quake, S.R., and Hedlund, B.P. "Single-cell and metagenomic analyses indicate a fermentative and saccharolytic lifestyle for members of the OP9 lineage." Nat. Commun. (2013) 4:1854.
Hugenholtz P et al. (1998)
Hugenholtz, P., Pitulle, C., Hershberger, K.L., and Pace, N.R. "Novel division level bacterial diversity in a Yellowstone hot spring." J. Bacteriol. (1998) 180(2):366-376.
Nobu MK et al. (2016)
Nobu, M.K., Dodsworth, J.A., Murugapiran, S.K., Rinke, C., Gies, E.A., Webster, G., Schwientek, P., Kille, P., Parkes, R.J., Sass, H., Jorgensen, B.B., Weightman, A.J., Liu, W.-T., Hallam, S.J., Tsiamis, G., Woyke, T., and Hedlund, B.P. "Phylogeny and physiology of candidate phylum 'Atribacteria' (OP9/JS1) inferred from cultivation-independent genomics." ISME J. (2016) 10:273-286.
Webster G et al. (2004)
Webster, G., Parkes, R.J., Fry, J.C., and Weightman, A.J. "Widespread occurrence of a novel division of Bacteria identified by 16S rRNA gene sequences originally found in deep marine sediments." Appl. Environ. Microbiol. (2004) 70:5708-5713.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
8 records from this provider organism-specific Integrated Microbial Genomes
Candidatus Atribacteria taxonomy/phylogenetic Lifemap
Atribacterota | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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