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Taxonomy browser (Candidatus Omnitrophota)

Candidatus Omnitrophota

Taxonomy ID: 67812 (for references in articles please use NCBI:txid67812)
current name
"Candidatus Omnitrophota" Williams et al. 2021, candidatus name 1) in [Williams TJ et al. (2021)]
homotypic synonym:
"Candidatus Omnitrophica" Rinke et al. 2013, candidatus name 2) in [Rinke C et al. (2013)]
Candidatus Omnitrophicaeota, candidatus name, orth. var., nom. nud. 3),4),5)
equivalent:
Omnitrophica
equivalent:
Omnitrophicaeota
equivalent:
Omnitrophota
vernacular name:
candidate division WOR-2
candidate division White Oak River group 2
NCBI BLAST name: bacteria
Rank: phylum
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
candidate division OP3
heterotypic synonym
candidate division Obsidian Pool 3
Lineage( full )
cellular organisms; Bacteria; PVC group
   Entrez records   
Database name Subtree links Direct links
Nucleotide 59,054 -
Protein 188,072 -
Genome 147 -
Popset 27 27
PubMed Central 53 49
SRA Experiments 96 -
Identical Protein Groups 1,424,629 -
BioProject 72 -
BioSample 2,472 1
Assembly 1,658 -
Taxonomy 194 1

Notes:

Comments and References:

Williams TJ et al. (2021), doi: 10.3389/fmicb.2021.741077, PubMed: abstract
Williams, T.J., Allen, M.A., Berengut, J.F., and Cavicchioli, R. "Shedding light on microbial 'Dark Matter': Insights into novel Cloacimonadota and Omnitrophota from an Antarctic lake." Front. Microbiol. (2021) 12:741077.
Rinke C et al. (2013), PubMed: abstract
Rinke, C., Schwientek, P., Sczyrba, A., Ivanova, N.N., Anderson, I.J., Cheng, J.-F., Darling, A., Malfatti, S., Swan, B.K., Gies, E.A., Dodsworth, J.A., Hedlund, B.P., Tsiamis, G., Sievert, S.M., Liu, W.-T., Eisen, J.A., Hallam, S.J., Kyrpides, N.C., Stepanauskas, R., Rubin, E.M., Hugenholtz, P., and Woyke, T. "Insights into the phylogeny and coding potential of microbial dark matter." Nature (2013) 499(7459):431-437.
Baker BJ et al. (2015)
Baker, B.J., Lazar, C.S., Teske, A.P., and Dick, G.J. "Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria." Microbiome (2015) 3:14.
Hugenholtz P et al. (1998)
Hugenholtz, P., Pitulle, C., Hershberger, K.L., and Pace, N.R. "Novel division level bacterial diversity in a Yellowstone hot spring." J. Bacteriol. (1998) 180(2):366-376.
Lagkouvardos I et al. (2014)
Lagkouvardos, I., Jehl, M.A., Rattei, T., and Horn, M. "The signature protein of the PVC superphylum." Appl. Environ. Microbiol. (2014) 80(2):440-445.
Perez-Molphe-Montoya E et al. (2022), doi:10.1111/1462-2920.16170
Perez-Molphe-Montoya, E., Küsel, K., and Overholt, W.A. "Redefining the phylogenetic and metabolic diversity of phylum Omnitrophota." Environ. Microbiol. (2022) 24:5437-5449.
Rinke C et al. (2013)
Rinke, C., Schwientek, P., Sczyrba, A., Ivanova, N.N., Anderson, I.J., Cheng, J.-F., Darling, A., Malfatti, S., Swan, B.K., Gies, E.A., Dodsworth, J.A., Hedlund, B.P., Tsiamis, G., Sievert, S.M., Liu, W.-T., Eisen, J.A., Hallam, S.J., Kyrpides, N.C., Stepanauskas, R., Rubin, E.M., Hugenholtz, P., and Woyke, T. "Insights into the phylogeny and coding potential of microbial dark matter." Nature (2013) 499(7459):431-437.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
51 records from this provider organism-specific Integrated Microbial Genomes
Candidatus Omnitrophica taxonomy/phylogenetic Lifemap
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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