Taxonomy browser (Streptomyces californicus)

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Taxonomy browser (Streptomyces californicus)

Streptomyces californicus

Taxonomy ID: 67351 (for references in articles please use NCBI:txid67351)

current name

Streptomyces californicus (Waksman and Curtis 1916) Waksman and Henrici 1948 (Approved Lists 1980) in [Skerman VBD et al. (1980), Shirling EB & Gottlieb D (1968)]

type strain of Streptomyces californicus: CGMCC :4.0570, ATCC :19734, ATCC :3312, CBS :125.20, CBS :354.53, CBS :473.68, BCRC :13688, DSM :40058, HUT:6049, IFM:1070, IFO :12750, NBRC :12750, IFO :3386, NBRC :3386, IMET:40261, JCM :4015, JCM :4567, BCCM/LMG :19309, NRRL :B-1221, NRRL :B-2098, NRRL :ISP-5058, RIA:1015, VKM:Ac-575, NCAIM:B.01475

basionym:

"Actinomyces californicus" Waksman and Curtis 1916, effective name¹⁾

homotypic synonym:

Streptomyces californicus (Waksman and Curtis 1916) Waksman and Henrici 1948 emend. Nouioui et al. 2018, emended name²⁾ in [Nouioui I et al. (2018c)]

NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

Streptomyces floridae Bartz et al. 1951 (Approved Lists 1980) in [Skerman VBD et al. (1980)]

type strain of Streptomyces floridae: CGMCC :4.1972, DSM :40938, IFO :15405, NBRC :15405, JCM :5068, NCIMB:12830, NRRL :2423

homotypic synonym:

Streptomyces floridae Bartz et al. 1951 emend. Nouioui et al. 2018, emended name³⁾ in [Nouioui I et al. (2018c)]

equivalent:

Streptomyces floridensis

heterotypic synonym

Streptomyces puniceus Patelski 1951 (Approved Lists 1980) in [Skerman VBD et al. (1980), Shirling EB & Gottlieb D (1968)]

type strain of Streptomyces puniceus: ATCC :19801, CBS :308.55, CBS :553.68, BCRC :12097, DSM :40083, IFO :12811, NBRC :12811, JCM :4406, NRRL :B-2895, NRRL :ISP-5083, RIA:1080, UNIQEM:187, VKM:Ac-579, ISP:5083

homotypic synonym:

Streptomyces puniceus Finlay and Sobin {in ATCC catalog}

Lineage( full ): cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces

Entrez records
Database name	Direct links	Links from type
Nucleotide	15,889	6,688
Protein	141,685	-
Genome	1	-
Popset	40	-
PubMed Central	87	-
Gene	13,977	-
SRA Experiments	24	-
Identical Protein Groups	120,699	-
BioProject	10	-
BioSample	101	8
Assembly	63	-
Taxonomy	1	-

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.
3) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.

Comments and References:

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.

Shirling EB & Gottlieb D (1968)

Shirling, E.B., and Gottlieb, D. "Cooperative description of type cultures of Streptomyces. II. Species descriptions from first study." Int. J. Syst. Bacteriol. (1968) 18(2):69-189.

Nouioui I et al. (2018c), doi: 10.3389/fmicb.2018.02007, PubMed: abstract

Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.

Bartz QR et al. (1951)

Bartz, Q.R., Ehrlich, J., Mold, J.D., Penner, M.A., and Smith, R. M. "Viomycin, a new tuberculostatic antibiotic." Am. Rev. Tuberc. (1951) 63:4-6. [No PubMed record available.]

Finlay AC & Sobin BA (1952)

Finlay, A.C., and Sobin, B.A. "Verfahren zur Herstellung eines Antibiotikums." German Pat. 834582, 1952.

Rong X & Huang Y (2010)

Rong, X., and Huang, Y. "Taxonomic evaluation of the Streptomyces griseus clade using multilocus sequence analysis and DNA-DNA hybridization, with proposal to combine 29 species and three subspecies as 11 genomic species." Int. J. Syst. Evol. Microbiol. (2010) 60:696-703. [N.B.: the authors incorrectly state that Streptomyces californicus is a later heterotypic synonym of Streptomyces puniceus. In fact, the reverse is true.]

Trüper HG (1999) (reference relating to proposed orthographic revision)

Trüper, H.G. "How to name a prokaryote? Etymological considerations, proposals and practical advice in prokaryote nomenclature." FEMS Microbiol. Rev. (1999) 23:231-249. [No abstract available.]

Trüper HG (1996) (reference relating to proposed orthographic revision)

Trüper, H.G. "Help! Latin! How to avoid the most common mistakes while giving Latin names to newly discovered prokaryotes." Microbiologia (Sociedad Espanola de Microbiologia) (1996) 12:473-475. [No abstract record available.]

Waksman SA & Curtis R (1916)

Waksman, S.A., and Curtis, R. "The Actinomyces of the soil." Soil Sci. (1916) 1:99-134. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Streptomyces puniceus	meta-databases	BacDive
Streptomyces puniceus Patelski 1951 (Approved Lists 1980)	taxonomy/phylogenetic	Encyclopedia of life
Streptomyces puniceus	culture/stock collections	Global Catalogue of Microorganisms
8 records from this provider	organism-specific	Integrated Microbial Genomes
Streptomyces californicus \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry

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A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov