Taxonomy browser (Vibrio harveyi)

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Taxonomy browser (Vibrio harveyi)

Vibrio harveyi

Taxonomy ID: 669 (for references in articles please use NCBI:txid669)

current name

Vibrio harveyi (Johnson and Shunk 1936) Baumann et al. 1981

type strain of Vibrio harveyi: ATCC :14126, CCUG :28584, CIP:103192, IFO :15634, NBRC :15634, BCCM/LMG :4044, NCCB:80033, NCTC :12970, NCIMB:1280, CAIM:513, DSM :19623, CECT:525, KCTC :12724

homotypic synonym:

"Achromobacter harveyi" Johnson and Shunk 1936, effective name¹⁾

"Pseudomonas harveyi" (Johnson and Shunk 1936) Breed 1948, effective name²⁾

"Photobacterium harveyi" (Johnson and Shunk 1936) Breed and Lessel 1954, effective name³⁾

Beneckea harveyi (Johnson and Shunk 1936) Reichelt and Baumann 1973 (Approved Lists 1980), nom. approb.⁴⁾

Lucibacterium harveyi (Johnson and Shunk 1936) Hendrie et al. 1970 (Approved Lists 1980), nom. approb.⁵⁾

includes:

Vibrio sp. HENC-01

Vibrio sp. HENC-02

Vibrio sp. PG 001

Vibrio sp. PG 002

Vibrio sp. PG 006

Vibrio sp. PG 007

NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

Vibrio carchariae Grimes et al. 1985

type strain of Vibrio carchariae: ATCC :35084, BCCM/LMG :7890, CCUG :19116, personal::1116b

heterotypic synonym

Vibrio trachuri Iwamoto et al. 1996

type strain of Vibrio trachuri: personal::T9210, BCCM/LMG :19643, JCM :9677

heterotypic synonym

Beneckea neptuna

Lineage( full ): cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	45,579	42,465	1,069
Protein	312,581	301,759	-
Structure	80	65	-
Genome	1	1	-
Popset	242	242	-
GEO Datasets	91	83	-
PubMed Central	3,851	3,851	-
Gene	16,556	16,556	-
SRA Experiments	177	170	-
Protein Clusters	4,236	4,236	-
Identical Protein Groups	224,213	218,144	-
BioProject	111	100	-
BioSample	480	461	15
Assembly	178	165	-
PubChem BioAssay	167	167	-
Taxonomy	9	1	-

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
5) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.

Comments and References:

image:Vibrio harveyi

Baumann P et al. (1980)

Baumann, P., Baumann, L., Bang, S.S., and Woolkalis, M.J. "Reevaluation of the taxonomy of Vibrio, Beneckea, and Photobacterium: abolition of the genus Beneckea." Curr. Microbiol. (1980) 4:127-132. [No PubMed record available.]

Gauger EJ & Gomez-Chiarri M (2002)

Gauger, E.J., and Gomez-Chiarri, M. "16S ribosomal DNA sequencing confirms the synonymy of Vibrio harveyi and V. carchariae." Dis. Aquat. Org. (2002) 52:39-46.

Grimes DJ et al. (1984)

Grimes, D.J., Stemmler, J., Hada, H., May, E.B., Maneval, D., Hetrick, F.M., Jones, R.T., Stoskopf, M., and Colwell, R.R. "Vibrio species associated with mortality of sharks held in captivity." Microb. Ecol. (1984) 10:271-282.

Iwamoto Y et al. (1995)

Iwamoto, Y., Suzuki, Y., Kurita, A., Watanabe, Y., Shimizu, T., Ohgami, H., and Yanagihara, Y. "Vibrio trachuri sp. nov., a new species isolated from diseased Japanese horse mackerel." Microbiol. Immunol. (1995) 39:831-837.

Pedersen K et al. (1998)

Pedersen, K., Verdonck, L., Austin, B., Austin, D.A., Blanch, A.R., Grimont, P.A.D., Jofre, J., Koblavi, S., Larsen, J.L., Tiainen, T., Vigneulle, M., and Swings, J. "Taxonomic evidence that Vibrio carchariae Grimes et al. 1985 is a junior synonym of Vibrio harveyi (Johnson and Shunk 1936) Baumann et al. 1981." Int. J. Syst. Bacteriol. (1998) 48:749-758. [No PubMed record available.]

Skerman VBD et al. (1980) (Beneckea harveyi)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Skerman VBD et al. (1980) (Lucibacterium harveyi)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Thompson FL et al. (2002b)

Thompson, F.L., Hoste, B., Vandemeulebroecke, K., Engelbeen, K., Denys, R., and Swings, J. "Vibrio trachuri Iwamoto et al. 1995 is a junior synonym of Vibrio harveyi (Johnson and Shunk 1936) Baumann et al. 1981." Int. J. Syst. Evol. Microbiol. (2002) 52:973-976. (Published online 30 November 2001. DOI 10.1099/ijs.0.02046-0)

VALIDATION LIST No. 6 (1981) (Vibrio harveyi )

VALIDATION LIST No. 6. Int. J. Syst. Bacteriol. (1981) 31:215-218.

VALIDATION LIST No. 17 (1985) (Vibrio carchariae)

VALIDATION LIST No. 17. Int. J. Syst. Bacteriol. (1985) 35:223-225.

VALIDATION LIST No. 57 (1996) (Vibrio trachuri)

VALIDATION LIST No. 57. Int. J. Syst. Bacteriol. (1996) 46:625-626.

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Vibrio harveyi	meta-databases	BacDive
8 records from this provider	organism-specific	BioCyc
GOLD: 13 Organisms	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Vibrio harveyi	culture/stock collections	Global Catalogue of Microorganisms
30 records from this provider	organism-specific	Integrated Microbial Genomes
Vibrio harveyi	taxonomy/phylogenetic	Lifemap
3 records from this provider	taxonomy/phylogenetic	Ocean Biogeographic Information System
Vibrio harveyi \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry
3 records from this provider	taxonomy/phylogenetic	World Register of Marine Species
Wikipedia	taxonomy/phylogenetic	iPhylo

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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