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Taxonomy browser (Shewanella frigidimarina)

Shewanella frigidimarina

Taxonomy ID: 56812 (for references in articles please use NCBI:txid56812)
current name
Shewanella frigidimarina Bowman et al. 1997 in [Bowman JP et al. (1997)]
type strain of Shewanella frigidimarina: ACAM:591, ATCC:700753, CIP:105515
homotypic synonym:
Shewanella frigidimarina Bowman et al. 1997 emend. Thorell et al. 2019, emended name 1) in [Thorell K et al. (2019)]
includes:
Shewanella sp. ACAM122
Shewenella putrefaciens NCIMB 400
NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Shewanella arctica Kim et al. 2012 non Qoura et al. 2014 Kim et al. 2012
type strain of Shewanella arctica Kim et al. 2012 non Qoura et al. 2014: JCM:16723, KCTC:23109, personal::IR12
includes:
Shewanella sp. IR 12
Shewanella sp. IR 26
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 1,162 1,023 3
Protein 28,943 24,279 -
Structure 31 20 -
Genome 1 1 -
Popset 13 13 -
Conserved Domains 1 - -
PubMed Central 252 252 -
Gene 8,401 1 -
SRA Experiments 9 6 -
Protein Clusters 3,225 3,225 -
Identical Protein Groups 22,732 21,970 -
BioProject 10 9 -
BioSample 15 13 1
Assembly 9 8 -
Taxonomy 2 1 -

Notes:

Comments and References:
Bowman JP et al. (1997), PubMed: abstract
Bowman, J.P., McCammon, S.A., Nichols, D.S., Skerratt, J.H., Rea, S.M., Nichols, P.D., and McMeekin, T.A. "Shewanella gelidimarina sp. nov. and Shewanella frigidimarina sp. nov., novel Antarctic species with the ability to produce eicosapentaenoic acid (20:5 omega 3) and grow anaerobically by dissimilatory Fe(III) reduction." Int. J. Syst. Bacteriol. (1997) 47(4):1040-1047.
Thorell K et al. (2019), doi: 10.3389/fmicb.2019.01861, PubMed: abstract
Thorell, K., Meier-Kolthoff, J.P., Sjöling, Å, and Martín-Rodríguez, A.J. "Whole-genome sequencing redefines Shewanella taxonomy." Front. Microbiol. (2019) 10:1861.
Hwang YJ et al. (2019), doi:10.1099/ijsem.0.003490
Hwang, Y.J., Jang, G.I., Cho, B.C., Lee, J.I., and Hwang, C.Y. "Shewanella psychromarinicola sp. nov., a psychrophilic bacterium isolated from pelagic sediment of the Ross Sea (Antarctica), and reclassification of Shewanella arctica Kim et al. 2012 as a later heterotypic synonym of Shewanella frigidimarina Bowman et al. 1997." Int. J. Syst. Evol. Microbiol. (2019) 69(8):2415-2423.
Kim SJ et al. (2012c)
Kim, S.-J., Park, S.-J., Oh, Y.-S., Lee, S.-A., Shin, K.-S., Roh, D.-H., and Rhee, S.-K. "Shewanella arctica sp. nov., an iron-reducing bacterium isolated from Arctic marine sediment." Int. J. Syst. Evol. Microbiol. (2012) 62:1128-1133.
Reid GA & Gordon EH (1999)
Reid, G.A., and Gordon, E.H. "Phylogeny of marine and freshwater Shewanella: reclassification of Shewanella putrefaciens NCIMB 400 as Shewanella frigidimarina." Int. J. Syst. Bacteriol. (1999) 49:189-191.
Qoura F et al. (2014)
Qoura, F., Brück, T., and Antranikian, G. "The psychrophile Shewanella arctica sp. nov: a new source of industrially important enzyme systems." JSM Biotechnol. Biomed. Eng. (2014) 2(1):1026.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Shewanella frigidimarina meta-databases BacDive
Shewanella frigidimarina Bowman et al. 1997 taxonomy/phylogenetic Encyclopedia of life
GOLD: 2 Organisms organism-specific Genomes On Line Database
Shewanella frigidimarina culture/stock collections Global Catalogue of Microorganisms
2728369144: Shewanella frigidimarina Ag06-30 organism-specific Integrated Microbial Genomes
Shewanella frigidimarina Bozal, Montes, Tudela, Jimenez & Guinea, 2002 taxonomy/phylogenetic Ocean Biogeographic Information System
Shewanella frigidimarina | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Shewanella frigidimarina Bozal, Montes, Tudela, Jimenez & Guinea, 2002 taxonomy/phylogenetic World Register of Marine Species
Notes:
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A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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