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Taxonomy browser (Lacticaseibacillus rhamnosus)

Lacticaseibacillus rhamnosus

Taxonomy ID: 47715 (for references in articles please use NCBI:txid47715)
current name
Lacticaseibacillus rhamnosus (Hansen 1968) Zheng et al. 2020 in [Zheng J et al. (2020)]
basionym:
Lactobacillus casei subsp. rhamnosus Hansen 1968 (Approved Lists 1980), nom. approb. 1)
type strain of Lactobacillus casei subsp. rhamnosus: ATCC:7469, CCUG:21452, CIP A157, DSM:20021, IFO:3425, JCM:1136, BCCM/LMG:6400, NBRC:3425, NCAIM B.01147, NCCB:46033, NCDO:243, NCIMB:6375, NCTC:12953, NRRL:B-442, VKM:B 574, NCTC:13764
homotypic synonym:
Lactobacillus rhamnosus (Hansen 1968) Collins et al. 1989
Lactobacillus casei rhamnosus
includes:
Lactobacillus sp. BCRC16000
Lactobacillus sp. NCIM 2587
Lactobacillus sp. W6
Lactobacillus sp. X9
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Lactobacillaceae; Lacticaseibacillus
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 60,630 53,825 2,272
Protein 590,651 527,592 -
Structure 53 18 -
Genome 1 1 -
Popset 154 154 -
GEO Datasets 222 131 -
PubMed Central 11,777 11,777 -
Gene 23,847 5,397 -
SRA Experiments 1,518 1,317 -
Protein Clusters 1,482 1,482 -
Identical Protein Groups 99,801 91,442 -
BioProject 356 302 -
BioSample 1,811 1,627 22
Assembly 681 641 -
PubChem BioAssay 6 6 -
Taxonomy 32 1 -

Notes:

Comments and References:
Zheng J et al. (2020), PubMed: abstract
Zheng, J., Wittouck, S., Salvetti, E., Franz, C.M.A.P., Harris, H.M.B., Mattarelli, P., O'Toole, P.W., Pot, B., Vandamme, P., Walter, J., Watanabe, K., Wuyts, S., Felis, G.E., Gänzle, M.G., and Lebeer, S. "A taxonomic note on the genus description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae." Int. J. Syst. Evol. Microbiol. (2020) 70(4):2782-2858.
Collins MD et al. (1989e)
Collins, M.D., Phillips, B.A., and Zanoni, P. "Deoxyribonucleic acid homology studies of Lactobacillus casei, Lactobacillus paracasei sp. nov., subsp. paracasei and subsp. tolerans, and Lactobacillus rhamnosus sp. nov., comb. nov." Int. J. Syst. Bacteriol. (1989) 39:105-108. [No PubMed record available.]
Falsen E et al. (1999) (reference with type strain information)
Falsen, E., Pascual, C., Sjoden, B., Ohlen, M., and Collins, M.D. "Phenotypic and phylogenetic characterization of a novel Lactobacillus species from human sources: description of Lactobacillus iners sp. nov." Int. J. Syst. Bacteriol. (1999) 49:217-221.
Skerman VBD et al. (1980) (Lactobacillus casei subsp. rhamnosus)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Lacticaseibacillus rhamnosus meta-databases BacDive
14 records from this provider organism-specific BioCyc
Lactobacillus rhamnosus (Hansen 1968) Collins et al. 1989 taxonomy/phylogenetic Encyclopedia of life
GOLD: 34 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Lactobacillus rhamnosus culture/stock collections Global Catalogue of Microorganisms
125 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Lacticaseibacillus rhamnosus | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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