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Taxonomy browser (Secale cereale)

Secale cereale

Taxonomy ID: 4550 (for references in articles please use NCBI:txid4550)
current name
Secale cereale L., 1753
homotypic synonym:
Secale cereale subsp. cereale
Genbank common name: rye
NCBI BLAST name: monocots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Hordeinae; Secale
   Entrez records   
Database name Subtree links Direct links
Nucleotide 67,616 67,048
Protein 1,836 1,385
Structure 6 6
Genome 1 1
Popset 217 213
GEO Datasets 43 43
PubMed Central 2,333 2,325
Gene 133 133
SRA Experiments 4,644 4,205
Identical Protein Groups 845 784
BioProject 73 72
BioSample 2,426 2,156
Assembly 4 4
PubChem BioAssay 82 82
Taxonomy 8 1

Comments and References:

image:Secale cereale
GRIN (Nov 25, 2013)
Name accessed on 25 November 2013 in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.
African Plant Database (Nov 25, 2013)
Name accessed on 25 November 2013 in: African Flowering Plant Database (version 3.1). Conservatoire et Jardin botaniques de la Villle de Geneve and South African National Biodiversity Institute, Pretoria, retrieved from http://www.ville-ge.ch/musinfo/bd/cjb/africa
Euro+Med Plantbase
Name verified on date of entry into database in: The Euro+Med Plantbase - the information resource for Euro-Mediterranean plant diversity. W. Greuter (Ed.) Botanic Garden and Botanical Museum Berlin-Dahlem.
Chikmawati T et al. 2005, doi:10.1139/G05-043
Chikmawati T, Skovmand B and Gustafson JP. 2005. Phylogenetic relationships among Secale species revealed by amplified fragment length polymorphisms. Genome 48: 792-801. DOI: https://dx.doi.org/10.1139/G05-043

Genome Information

Go to NCBI genomic BLAST page for Secale cereale
Genome view: 8 chromosomes
Names 1R 2R 3R 4R 5R 6R 7R Pltd

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Secale cereale taxonomy taxonomy/phylogenetic Arctos Specimen Database
dryaddb supplemental materials Dryad Digital Repository
GOLD: 4 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
Secale cereale L. taxonomy/phylogenetic Integrated Taxonomic Information System
GrainGenes taxonomy/phylogenetic NCBI taxonomy bookmarks
2 records from this provider taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Secale cereale (L.) herbarium/museum collections PlantaeDB, University of Bucharest
Secale cereale taxonomy/phylogenetic Plants of the World Online
Secale cereale taxonomy/phylogenetic The International Plant Names Index
Secale cereale taxonomy/phylogenetic TreeBase
2 records from this provider taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Secale cereale organism-specific WebScipio - eukaryotic gene identification
diArk: Secale cereale organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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