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Taxonomy browser (Amycolatopsis mediterranei)

Amycolatopsis mediterranei

Taxonomy ID: 33910 (for references in articles please use NCBI:txid33910)
current name
Amycolatopsis mediterranei (Margalith and Beretta 1960) Lechevalier et al. 1986
type strain of Amycolatopsis mediterranei: ATCC:13685, CCUG:43144, CIP:107074, DSM:43304, IFO:13415, ISP:5501, JCM:4789, NBRC:13415, NRRL:B-3240, VKM:Ac:798, IMSNU:20056
homotypic synonym:
"Streptomyces mediterranei" Margalith and Beretta 1960, effective name 1)
Amycolatopsis mediterranei (Margalith and Beretta 1960) Lechevalier et al. 1986 emend. Nouioui et al. 2018, emended name 2) in [Nouioui I et al. (2018c)]
Nocardia mediterranei (Margalith and Beretta 1960) Thiemann et al. 1969 (Approved Lists 1980), nom. approb. 3)
NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 847 801 16
Protein 75,313 37,925 -
Structure 15 13 -
Genome 1 1 -
Popset 5 5 -
GEO Datasets 28 - -
PubMed Central 413 413 -
Gene 37,996 28 -
SRA Experiments 10 4 -
Protein Clusters 7,346 7,346 -
Identical Protein Groups 13,026 11,619 -
BioProject 16 8 -
BioSample 24 9 3
Assembly 8 4 -
Taxonomy 5 1 -

Notes:

Comments and References:

Nouioui I et al. (2018c), doi: 10.3389/fmicb.2018.02007, PubMed: abstract
Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.
Bala S et al. (2004)
Bala, S., Khanna, R., Dadhwal, M., Prabhagaran, S.R., Shivaji, S., Cullum J., and lal, R. "Reclassification of Amycolatopsis mediterranei DSM 46095 as Amycolatopsis rifamycinica sp. nov." Int. J. Syst. Evol. Microbiol. (2004) 54:1145-1149. Published online 9 January 2004: DOI 10.1099/ijs.0.02901-0
Lechevalier MP et al. (1986)
Lechevalier, M.P., Prauser, H., Labeda, D.P., and Ruan, J.S. "Two new genera of nocardioform actinomycetes: Amycolata gen. nov. and Amycolatopsis gen. nov." Int. J. Syst. Bacteriol. (1986) 36:29-37. [No PubMed record available.]
Margalith P & Beretta G (1960)
Margalith, P., and Beretta, G. "Rifamycin. IX. Taxonomic study on Streptomyces mediterranei sp. nov." Mycopathol. Appl. (1960) 13:321-330. [No PubMed record available.]
Skerman VBD et al. (1980) (Nocardia mediterranei)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Thiemann JE et al. (1969b)
Thiemann, J.E., Zucco, G., and Pelizza, G. "A proposal for the transfer of Streptomyces mediterranei Margalith and Beretta 1960 to the genus Nocardia as Nocardia mediterranea (Margalith and Beretta) comb. nov." Arch. Mikrobiol. (1969) 67:147-155. [No abstract available.]
Trüper HG (1996) (reference relating to proposed orthographic revision)
Trüper, H.G. "Help! Latin! How to avoid the most common mistakes while giving Latin names to newly discovered prokaryotes." Microbiologia (Sociedad Espanola de Microbiologia) (1996) 12:473-475. [No abstract record available.]
Trüper HG (1999) (reference relating to proposed orthographic revision)
Trüper, H.G. "How to name a prokaryote? Etymological considerations, proposals and practical advice in prokaryote nomenclature." FEMS Microbiol. Rev. (1999) 23:231-249. [No abstract available.]
Nouioui I et al. (2018c)
Nouioui, I., Carro, L., GarcIa-Lopez, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Goker, M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Amycolatopsis mediterranei meta-databases BacDive
Amycolatopsis mediterranei (Margalith and Beretta 1960) Lechevalier et al. 1986 taxonomy/phylogenetic Encyclopedia of life
GOLD: 3 Organisms organism-specific Genomes On Line Database
Amycolatopsis mediterranei culture/stock collections Global Catalogue of Microorganisms
3 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Amycolatopsis mediterranei | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
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A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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