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Taxonomy browser (Xanthomonas)

Xanthomonas

Taxonomy ID: 338 (for references in articles please use NCBI:txid338)
current name
Xanthomonas Dowson 1939 (Approved Lists 1980) in [Skerman VBD et al. (1980), Dowson WJ (1939)]
homotypic synonym:
"Phytomonas" Bergey et al. 1923, effective name 1)
Xanthomonas Dowson 1939 (Approved Lists 1980) emend. van den Mooter and Swings 1990, emended name 2)
Xanthomonas Dowson 1939 (Approved Lists 1980) emend. Vauterin et al. 1995, emended name 3) in [Vauterin L et al. (1995)]
Xanthomonas Dowson 1939 (Approved Lists 1980) emend. Bansal et al. 2023, emended name 4) in [Bansal K et al. (2023)]
NCBI BLAST name: g-proteobacteria
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Lysobacterales; Lysobacteraceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 1,003,105 15
Protein 7,482,445 103,909
Structure 395 6
Genome 41 1
Popset 1,046 473
Conserved Domains 21 19
GEO Datasets 432 -
PubMed Central 14,980 14,980
Gene 295,988 -
SRA Experiments 5,031 12
Protein Clusters 8,593 5,408
Identical Protein Groups 1,899,430 103,482
BioProject 1,391 21
BioSample 6,685 12
Assembly 4,634 -
PubChem BioAssay 125 1
Taxonomy 1,229 1

Notes:

Comments and References:

Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Dowson WJ (1939)
Dowson, W.J. "On the systematic position and generic names of the Gram negative bacterial plant pathogens." Zentrabl. Bakteriol. Parasitenk. Infektionskr. Hyg. Abt. II (1939) 100:177-193.
Vauterin L et al. (1995)
Vauterin, L., Hoste, B., Kersters, K., and Swings, J. "Reclassification of Xanthomonas." Int. J. Syst. Bacteriol. (1995) 45(3):472-489.
Bansal K et al. (2023)
Bansal, K., Kumar, S., Singh, A., Chaudhary, A., and Patil, P.B. "Redefining the taxonomic boundaries of genus Xanthomonas." Taxonomy (2023) 3(4):452-465.
Xanthomonas (LPSN link)
Ferreira-Tonin M et al. (2012)
Ferreira-Tonin, M., Rodrigues-Neto, J., Harakava, R., and Destefano, S.A. "Phylogenetic analysis of Xanthomonas based on partial rpoB gene sequences and species differentiation by PCR-RFLP." Int. J. Syst. Evol. Microbiol. (2012) 62:1419-1424.
Goncalves ER & Rosato YB (2002)
Goncalves, E.R., and Rosato, Y.B. "Phylogenetic analysis of Xanthomonas species based upon 16S-23S rDNA intergenic spacer sequences." Int. J. Syst. Evol. Microbiol. (2002) 52:355-361.
Hauben L et al. (1997)
Hauben, L., Vauterin, L., Swings, J., and Moore, E.R. "Comparison of 16S ribosomal DNA sequences of all Xanthomonas species." Int. J. Syst. Bacteriol. (1997) 47:328-335.
Parkinson N et al. (2007)
Parkinson, N., Aritua, V., Heeney, J., Cowie, C., Bew, J., and Stead, D. "Phylogenetic analysis of Xanthomonas species by comparison of partial gyrase B gene sequences." Int. J. Syst. Evol. Microbiol. (2007) 57:2881-2887.
Rademaker JL et al. (2000)
Rademaker, J.L., Hoste, B., Louws, F.J., Kersters, K., Swings, J., Vauterin, L., Vauterin, P., and de Bruijn, F.J. "Comparison of AFLP and rep-PCR genomic fingerprinting with DNA-DNA homology studies: Xanthomonas as a model system." Int. J. Syst. Evol. Microbiol. (2000) 50:665-677.
Rademaker JLW et al. (2005)
Rademaker, J.L.W., Louws, F.J., Schultz, M.H., Rossbach, U., Vauterin, L., Swings, J., and de Bruijn, F.J. "A comprehenshive species to strain taxonomic framework for Xanthomonas." Phytopathol. (2005) 95:1098-1111. [No PubMed record available.]
Van den Mooter M & Swings J (1990)
Van den Mooter, M., and Swings, J. "Numerical analysis of 295 phenotypic features of 266 Xanthomonas strains and related strains and an improved taxonomy of the genus." Int. J. Syst. Bacteriol. (1990) 40:348-369.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Xanthomonas taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0564719 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
3 records from this provider organism-specific Integrated Microbial Genomes
Xanthomonas taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Xanthomonas | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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