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Taxonomy browser (Sphingobium indicum)

Sphingobium indicum

Taxonomy ID: 332055 (for references in articles please use NCBI:txid332055)
current name
Sphingobium indicum Pal et al. 2005
type strain of Sphingobium indicum: CCM:7286, MTCC:6364, personal::B90A, DSM:16412
homotypic synonym:
Sphingobium indicum Pal et al. 2005 emend. Feng et al. 2019, emended name 1) in [Feng GD et al. (2019)]
NCBI BLAST name: a-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Sphingobium francense Pal et al. 2005
type strain of Sphingobium francense: CCM:7288, MTCC:6363, personal::Sp+, CIP:108928, CCUG:53833, DSM:26779
equivalent:
Sphingomonas francense
heterotypic synonym
Sphingobium japonicum Pal et al. 2005
type strain of Sphingobium japonicum: CCM:7287, MTCC:6362, personal::UT26, NBRC:101211, personal::UT26S
heterotypic synonym
Sphingobium chinhatense Dadhwal et al. 2009
type strain of Sphingobium chinhatense: CCM:7432, MTCC:8598, personal::IP26
heterotypic synonym
Sphingobium lucknowense Garg et al. 2012
type strain of Sphingobium lucknowense: personal::F2, CCM:7544, MTCC:9456
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 1,155 150 15
Protein 38,525 12,351 -
Structure 6 1 -
Genome 1 1 -
PubMed Central 181 181 -
Gene 8,945 1 -
SRA Experiments 2 2 -
Protein Clusters 543 543 -
Identical Protein Groups 20,698 10,196 -
BioProject 9 4 -
BioSample 12 6 9
Assembly 9 2 -
Taxonomy 6 1 -

Notes:

Comments and References:
Feng GD et al. (2019), PubMed: abstract
Feng, G.-D., Chen, M.-B., Zhang, X.-J., Wang, D.-D., and Zhu, H.-H. "Whole genome sequences reveal the presence of 11 heterotypic synonyms in the genus Sphingobium and emended descriptions of Sphingobium indicum, Sphingobium fuliginis, Sphingobium xenophagum and Sphingobium cupriresistens." Int. J Syst. Evol. Microbiol. (2019) 69(7):2161-2165. [Erratum: Int. J. Syst. Evol. Microbiol. (2019) 69(12):3985.]
Feng GD et al. (2019), doi:10.1099/ijsem.0.003432
Feng, G.-D., Chen, M.-B., Zhang, X.-J., Wang, D.-D., and Zhu, H.-H. "Whole genome sequences reveal the presence of 11 heterotypic synonyms in the genus Sphingobium and emended descriptions of Sphingobium indicum, Sphingobium fuliginis, Sphingobium xenophagum and Sphingobium cupriresistens." Int. J Syst. Evol. Microbiol. (2019) 69(7):2161-2165. [Erratum: Int. J. Syst. Evol. Microbiol. (2019) 69(12):3985.]
Dadhwal M et al. (2009)
Dadhwal, M., Jit, S., Kumari, H., and Lal, R. "Sphingobium chinhatense sp. nov., a hexachlorocyclohexane (HCH)-degrading bacterium isolated from an HCH dumpsite." Int. J. Syst. Evol. Microbiol. (2009) 59:3140-3144.
Garg N et al. (2012)
Garg, N., Bala, K., and Lal, R. "Sphingobium lucknowense sp. nov., a hexachlorocyclohexane (HCH)-degrading bacterium isolated from HCH-contaminated soil." Int. J. Syst. Evol. Microbiol. (2012) 62:618-623.
Pal R et al. (2005)
Pal, R., Bala, S., Dadhwal, M., Kumar, M., Dhingra, G., Prakash, O., Prabhagaran, S.R., Shivaji, S., Cullum, J., Holliger, C., and Lal, R. "The hexachlorocyclohexane-degrading bacterial strains Sphingomonas paucimobilis B90A, UT26 and Sp+ having similar lin genes are three distinct species, Sphingobium indicum sp. nov., Sphingobium japonicum sp. nov. and Sphingobium francense sp. nov., and reclassification of [Sphingomonas] chungbukensis as Sphingobium chungbukense comb. nov." Int. J. Syst. Evol. Microbiol. (2005) 55:1965-1972. Published online 29 April 2005. DOI 10.1099/ijs.0.63201-0

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Sphingobium indicum meta-databases BacDive
Sphingobium indicum Pal et al. 2005 taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0511211 organism-specific Genomes On Line Database
Sphingobium indicum culture/stock collections Global Catalogue of Microorganisms
2828378008: Sphingobium indicum DSM 26779 organism-specific Integrated Microbial Genomes
Sphingobium indicum | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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