Taxonomy browser (Amycolatopsis orientalis)

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Taxonomy browser (Amycolatopsis orientalis)

Amycolatopsis orientalis

Taxonomy ID: 31958 (for references in articles please use NCBI:txid31958)

current name

Amycolatopsis orientalis (Pittenger and Brigham 1956) Lechevalier et al. 1986

type strain of Amycolatopsis orientalis: ATCC :19795, CIP:107113, DSM :40040, IFO :12806, ISP:5040, JCM :4235, JCM :4600, NBRC :12806, NRRL :2450, UNIQEM:181, VKM:Ac:866, KCTC :9412, IMSNU:20058

homotypic synonym:

"Streptomyces orientalis" Pittenger and Brigham 1956, effective name¹⁾

Amycolatopsis orientalis (Pittenger and Brigham 1956) Lechevalier et al. 1986 emend. Nouioui et al. 2018, emended name²⁾ in [Nouioui I et al. (2018c)]

Nocardia orientalis (Pittenger and Brigham 1956) Pridham and Lyons 1969 (Approved Lists 1980), nom. approb.³⁾

includes:

Actinoplanes sp. ATCC 53771

Amycolatopsis orientalis subsp. orientalis (Pittenger and Brigham 1956) Lechevalier et al. 1986

equivalent:

Amycolatopsis orientalis orientalis

NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)

Lineage( full ): cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	934	143	215
Protein	32,151	31,873	-
Structure	79	76	-
Genome	1	1	-
Popset	12	12	-
PubMed Central	482	482	-
Gene	24,602	1	-
SRA Experiments	9	6	-
Protein Clusters	5,051	5,051	-
Identical Protein Groups	25,583	24,840	-
BioProject	6	3	-
BioSample	10	7	2
Assembly	5	2	-
PubChem BioAssay	3	3	-
Taxonomy	6	1	-

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.
3) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.

Comments and References:

Nouioui I et al. (2018c), doi: 10.3389/fmicb.2018.02007, PubMed: abstract

Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.

Howey RT et al. (1990)

Howey, R.T., Lock, C.M., and Moore, L.V.H. "Subspecies names automatically created by Rule 46." Int. J. Syst. Bacteriol. (1990) 40:317-319. [No PubMed record available.]

Lechevalier MP et al. (1986)

Lechevalier, M.P., Prauser, H., Labeda, D.P., and Ruan, J.S. "Two new genera of nocardioform actinomycetes: Amycolata gen. nov. and Amycolatopsis gen. nov." Int. J. Syst. Bacteriol. (1986) 36:29-37. [No PubMed record available.]

Pittenger RC & Brigham RB (1956)

Pittenger, R.C., and Brigham, R.B. "Streptomyces orientalis, n. sp., the source of vancomycin." Antibiot. Chemother. (1956) 6:642-647. [No PubMed record available.]

Skerman VBD et al. (1980) (Nocardia orientalis)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.

Stackebrandt E et al. (2004a)

Stackebrandt, E., Kroppenstedt, R.M., Wink, J., and Schumann, P. "Reclassification of Amycolatopsis orientalis subsp. lurida Lechevalier et al. 1986 as Amycolatopsis lurida sp. nov." Int. J. Syst. Evol. Microbiol. (2004) 54:267-268.

Nouioui I et al. (2018c)

Nouioui, I., Carro, L., GarcIa-Lopez, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Goker, M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Amycolatopsis orientalis	meta-databases	BacDive
2 records from this provider	organism-specific	BioCyc
GOLD: Go0117210	organism-specific	Genomes On Line Database
Amycolatopsis orientalis	culture/stock collections	Global Catalogue of Microorganisms
2856594327: Amycolatopsis orientalis B-37	organism-specific	Integrated Microbial Genomes

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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