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Taxonomy browser (Mycolicibacterium rufum)

Mycolicibacterium rufum

Taxonomy ID: 318424 (for references in articles please use NCBI:txid318424)
current name
Mycolicibacterium rufum (Hennessee et al. 2009) Gupta et al. 2018
basionym:
Mycobacterium rufum Hennessee et al. 2009
type strain of Mycobacterium rufum: ATCC:BAA-1377, CIP:109273, JCM:16372, personal::JS14, DSM:45406
homotypic synonym:
Mycobacterium rufum Hennessee et al. 2009 emend. Nouioui et al. 2018, emended name in [Nouioui I et al. (2018c)]
includes:
Mycobacterium sp. JS14
NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 2,839 23 2,834
Protein 16,738 16,738 -
Genome 1 1 -
Popset 7 7 -
PubMed Central 2 2 -
SRA Experiments 5 4 -
Identical Protein Groups 13,337 13,337 -
BioProject 6 5 -
BioSample 7 5 5
Assembly 7 6 -
Taxonomy 2 1 -

Comments and References:
Nouioui I et al. (2018c), doi: 10.3389/fmicb.2018.02007, PubMed: abstract
Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.
Gupta RS et al. (2018)
Gupta, R.S., Lo, B., and Son, J. "Phylogenomics and comparative genomic studies robustly support division of the genus Mycobacterium into an emended genus Mycobacterium and four novel genera." Front. Microbiol. (2018) 9:67. [Corrigendum: Front. Microbiol. (2019) 10:714. (PMID 31024493)]
Hennessee CT et al. (2009)
Hennessee, C.T., Seo, J.-S., Alvarez, A.M., and Li, Q.X. "Polycyclic aromatic hydrocarbon-degrading species isolated from Hawaiian soils: Mycobacterium crocinum sp. nov., Mycobacterium pallens sp. nov., Mycobacterium rutilum sp. nov., Mycobacterium rufum sp. nov. and Mycobacterium aromaticivorans sp. nov." Int. J. Syst. Evol. Microbiol. (2009) 59:378-387.
VALIDATION LIST No. 181 (2018)
Validation List No. 181: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2018) 68:1411-1417.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Mycobacterium rufum meta-databases BacDive
GOLD: Go0094886 organism-specific Genomes On Line Database
Mycobacterium rufum culture/stock collections Global Catalogue of Microorganisms
2 records from this provider organism-specific Integrated Microbial Genomes
Mycobacterium rufum taxonomy/phylogenetic Lifemap
Mycolicibacterium rufum | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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