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Taxonomy browser (Pseudomonas syringae)

Pseudomonas syringae

Taxonomy ID: 317 (for references in articles please use NCBI:txid317)
current name
Pseudomonas syringae van Hall 1902
type strain of Pseudomonas syringae: ATCC:19310, CCUG:14279, CFBP:1392, CIP:106698, ICMP:3023, BCCM/LMG:1247, NCAIM B.01398, NCPPB:281, NRRL:B-1631, DSM:10604, KCTC:12500
homotypic synonym:
Pseudomonas syringae subsp. syringae van Hall 1902
includes:
Pseudomonas sp. GR12-2
NCBI BLAST name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 1
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 321,010 76,280 2,523
Protein 2,329,053 860,134 -
Structure 55 40 -
Genome 1 1 -
Popset 415 215 -
Conserved Domains 1 1 -
GEO Datasets 531 252 -
PubMed Central 15,297 15,297 -
Gene 32,782 15,946 -
SRA Experiments 1,351 650 -
Protein Clusters 7,601 7,601 -
Identical Protein Groups 848,982 618,947 -
BioProject 472 123 -
BioSample 1,884 793 5
Assembly 935 310 -
PubChem BioAssay 36 27 -
Taxonomy 175 1 -

Comments and References:

Gardan L et al. (1991)
Gardan, L., Cottin, S., Bollet, C., and Hunault, G. "Phenotypic heterogeneity of Pseudomonas syringae van Hall." Res. Microbiol. (1991) 142:995-1003.
Gardan L et al. (1999)
Gardan, L., Shafik, H., Belouin, S., Broch, R., Grimont, F., and Grimont, P.A.D. "DNA relatedness among the pathovars of Pseudomonas syringae and description of Pseudomonas tremae sp. nov. and Pseudomonas cannabina sp. nov. (ex Sutic and Dowson 1959)." Int. J. Syst. Bacteriol. (1999) 49:469-478. [N.B.: Gardan et al. claim strains CFBP 1660 (pathotype of P. syringae pv. primulae) and CFBP 2348 (pathotype of P. syringae pv. ribicola) are misidentified and should be transferred to Pseudomonas viridiflava.]
Sawada H et al. (1999)
Sawada, H., Suzuki, F., Matsuda, I., and Saitou, N. "Phylogenetic analysis of Pseudomonas syringae pathovars suggests the horizontal gene transfer of argK and the evolutionary stability of hrp gene cluster." J. Mol. Evol. (1999) 49:627-644.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Young JM et al. (1996) (reference with type strain information)
Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Pseudomonas syringae meta-databases BacDive
2 records from this provider organism-specific BioCyc
dryaddb supplemental materials Dryad Digital Repository
GOLD: 52 Organisms organism-specific Genomes On Line Database
Pseudomonas syringae culture/stock collections Global Catalogue of Microorganisms
71 records from this provider organism-specific Integrated Microbial Genomes
Pseudomonas syringae taxonomy/phylogenetic Lifemap
Pseudomonas syringae | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Pseudomonas syringae taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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