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Taxonomy browser (Thermoproteota)

Thermoproteota

Taxonomy ID: 28889 (for references in articles please use NCBI:txid28889)
current name
Thermoproteota corrig. Garrity and Holt 2021 in [Oren A & Garrity GM (2021)]
homotypic synonym:
"Crenarchaeota" Garrity and Holt 2002 1) in [Validation List No. 85 (2002)]
homotypic synonym:
"Crenarchaeota" Woese et al. 1990, effective name 2)
"Thermoproteaeota" Oren et al. 2015, effective name 3) in [Oren A et al. (2015)]
"Thermoproteota" Whitman et al. 2018, effective name 4),5) in [Whitman WB et al. (2018)]
equivalent:
Crenarchaeota
NCBI BLAST name: crenarchaeotes
Rank: phylum
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Eocyta
heterotypic synonym
Thermoproteaeota
heterotypic synonym
"Candidatus Korarchaeota" Barns et al. 1996, candidatus name 6),7) in [Candidatus List No. 5 (2023)]
equivalent:
Korarchaeota
heterotypic synonym
Xenarchaea
heterotypic synonym
Xenarchaeota
common name(s) eocytes
blast name
crenarchaeotes
Lineage( full )
cellular organisms; Archaea; Thermoproteati
   Entrez records   
Database name Subtree links Direct links
Nucleotide 87,476 18
Protein 842,534 -
Structure 1,448 -
Genome 148 -
Popset 731 335
Conserved Domains 155 2
GEO Datasets 790 -
PubMed Central 12,173 3,697
Gene 318,902 -
SRA Experiments 1,814 -
Protein Clusters 8,886 -
Identical Protein Groups 1,483,091 -
BioProject 549 1
BioSample 5,509 42
Assembly 2,441 -
PubChem BioAssay 9 -
Taxonomy 1,308 1

Notes:

Comments and References:

Oren A & Garrity GM (2021), PubMed: abstract
Oren, A., and Garrity, G.M. "Valid publication of the names of forty-two phyla of prokaryotes." Int. J. Syst. Evol. Microbiol. (2021) 71(10):005056.
Validation List No. 85 (2002), PubMed: abstract
VALIDATION LIST No. 85. Int. J. Syst. Evol. Microbiol. (2002) 52(3):685-690. [No abstract available.]
Oren A et al. (2015), PubMed: abstract
Oren, A., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rosselló-Móra, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Whitman, W.B. "Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes." Int. J. Syst. Evol. Microbiol. (2015) 65(11):4284-4287.
Whitman WB et al. (2018), PubMed: abstract
Whitman, W.B., Oren, A., Chuvochina, M., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rossello-Mora, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Ventura, S. "Proposal of the suffix -ota to denote phyla. Addendum to 'Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes'." Int. J. Syst. Evol. Microbiol. (2018) 68(3):967-969.
Candidatus List No. 5 (2023), PubMed: abstract
Oren, A., and Göker, M. "Candidatus List. Lists of names of prokaryotic Candidatus phyla." Int. J. Syst. Evol. Microbiol. (2023) 73(5):005821.
Barns SM et al. (1994)
Barns, S.M., Fundyga, R.E., Jeffries, M.W., and Pace, N.R. "Remarkable archaeal diversity detected in a Yellowstone National Park hot spring environment." Proc. Natl. Acad. Sci. USA (1994) 91:1609-1613.
Burggraf S et al. (1997b)
Burggraf, S., Huber, H., and Stetter, K.O. "Reclassification of the crenarchael orders and families in accordance with 16S rRNA sequence data." Int. J. Syst. Bacteriol. (1997) 47:657-660.
Barns SM et al. (1996)
Barns, S.M., Delwiche, C.F., Palmer, J.D., and Pace, N.R. "Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences." Proc. Natl. Acad. Sci. USA (1996) 93:9188-9193.
Garrity GM & Holt JG (2001b)
Garrity, G.M., and Holt, J.G. "Phylum AI. Crenarchaeota phy. nov." In: Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 1 (The Archaea and the deeply branching and phototrophic Bacteria) (D.R. Boone and R.W. Castenholz, eds.), Springer-Verlag, New York (2001). p. 169. [No PubMed record available.]
Woese CR et al. (1984)
Woese, C.R., Gupta, R., Hahn, C.M., Zillig, W., and Tu, J. "The phylogenetic relationships of three sulfur dependent archaebacteria." Syst. Appl. Microbiol. (1984) 5:97-105.
Woese CR et al. (1990)
Woese, C.R., Kandler, O., and Wheelis, M.L. "Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya." Proc. Natl. Acad. Sci. USA (1990) 87:4576-4579.
Burggraf S et al. (1997)
Burggraf, S., Heyder, P., and Eis, N. "A pivotal Archaea group." Nature (1997) 385:780. [No abstract available.]
Cavalier-Smith T (2002)
Cavalier-Smith, T. "The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification." Int. J. Syst. Evol. Microbiol. (2002) 52(1):7-76.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Crenarchaeota taxonomy/phylogenetic Encyclopedia of life
28 records from this provider organism-specific Integrated Microbial Genomes
Crenarchaeota taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Crenarchaeota taxonomy/phylogenetic Ocean Biogeographic Information System
Thermoproteota | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
ToL taxonomy/phylogenetic Tree of Life
Crenarchaeota taxonomy/phylogenetic TreeBase
Crenarchaeota taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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