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Taxonomy browser (Trinickia caryophylli)

Trinickia caryophylli

Taxonomy ID: 28094 (for references in articles please use NCBI:txid28094)
current name
Trinickia caryophylli (Burkholder 1942) Estrada-de los Santos et al. 2018 in [Estrada-de Los Santos P et al. (2018), Validation List No. 184 (2018)]
basionym:
Pseudomonas caryophylli (Burkholder 1942) Starr and Burkholder 1942 (Approved Lists 1980) in [Skerman VBD et al. (1980)]
type strain of Pseudomonas caryophylli: ATCC:25418, CCUG:20834, CFBP:2429, CFBP:3818, CIP:105770, DSM:50341, HAMBI:2159, ICMP:512, JCM:10488, JCM:9310, BCCM/LMG:2155, NCPPB:2151
homotypic synonym:
"Phytomonas caryophylli" Burkholder 1942, effective name 1)
Burkholderia caryophylli (Burkholder 1942) Yabuuchi et al. 1993 in [Validation List No. 45 (1993)]
Paraburkholderia caryophylli (Yabuuchi et al. 1993) Sawana et al. 2015 in [Validation List No. 164 (2015)]
includes:
Pseudomonas caryophyllii
NCBI BLAST name: b-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Trinickia
   Entrez records   
Database name Direct links Links from type
Nucleotide 1,044 724
Protein 40,836 -
Structure 1 -
Genome 1 -
Popset 10 -
PubMed Central 84 -
Gene 5,840 -
SRA Experiments 13 -
Protein Clusters 1 -
Identical Protein Groups 8,644 -
BioProject 14 -
BioSample 17 14
Assembly 10 -
Taxonomy 1 -

Notes:

Comments and References:
Estrada-de Los Santos P et al. (2018), doi: 10.3390/genes9080389, PubMed: abstract
Estrada-de Los Santos, P., Palmer, M., Chávez-Ramírez, B., Beukes, C., Steenkamp, E.T., Briscoe, L., Khan, N., Maluk, M., Lafos, M., Humm, E., Arrabit, M., Crook, M., Gross, E., Simon, M.F., Dos Reis Jr., F.B., Whitman, W.B., Shapiro, N., Poole, P.S., Hirsch, A.M., Venter, S.N., and James, E.K. "Whole genome analyses suggests that Burkholderia sensu lato contains two additional novel genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the evolution of diazotrophy and nodulation in the Burkholderiaceae." Genes (Basel) (2018) 9:E389.
Validation List No. 184 (2018), PubMed: abstract
Validation List No. 184: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2018) 68(11):3379-3393.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Validation List No. 45 (1993)
VALIDATION LIST No. 45. Int. J. Syst. Bacteriol. (1993) 43(2):398-399.
Validation List No. 164 (2015)
Validation List No. 164: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2015) 65(7):2017-2025.
Burkholder WH (1942)
Burkholder, W.H. "Three bacterial plant pathogens, Phytomonas caryophylli, sp. n., Phytomonas alliicola sp. n., and Phytomonas manihoti (Arthaud-Berthet et Bondar) Viegas." Phytopathology (1942) 32:41-149. [No PubMed record available.]
Sawana A et al. (2014)
Sawana, A., Adeolu, M., and Gupta, R.S. "Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species." Front. Genet. (2014) 5:429.
Yabuuchi E et al. (1992)
Yabuuchi, E., Kosako, Y., Oyaizu, H., Yano, I., Hotta, H., Hashimoto, Y., Ezaki, T., and Arakawa, M. "Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov." Microbiol. Immunol. (1992) 36:1251-1275. [Erratum: Microbiol. Immunol. (1993) 37:335.]
Young JM et al. (1996) (reference with type strain information)
Young, J.M., Saddler, G.S., Takikawa, Y., De Boer, S.H., Vauterin, L., Gardan, L., Gvozdyak, R.I., and Stead, D.E. "Names of plant pathogenic bacteria 1864-1995." Rev. Plant Pathol. (1996) 75:721-763. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Trinickia caryophylli meta-databases BacDive
2 records from this provider organism-specific BioCyc
Burkholderia caryophylli (Burkholder 1942) Yabuuchi et al. 1993 taxonomy/phylogenetic Encyclopedia of life
GOLD: 2 Organisms organism-specific Genomes On Line Database
Burkholderia caryophylli culture/stock collections Global Catalogue of Microorganisms
4 records from this provider organism-specific Integrated Microbial Genomes
Trinickia caryophylli | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
2 records from this provider taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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