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Taxonomy browser (Oscillospiraceae)

Oscillospiraceae

Taxonomy ID: 216572 (for references in articles please use NCBI:txid216572)
current name
Oscillospiraceae Peshkoff 1940 (Approved Lists 1980) Peshkoff 1940 in [Skerman VBD et al. (1980)]
homotypic synonym:
Oscillospiraceae Peshkoff 1940 (Approved Lists 1980) emend. Tindall 2019, emended name 1) in [Tindall BJ (2019b)]
NCBI BLAST name: firmicutes
Rank: family
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Ruminococcaceae Rainey 2010 in [Validation List No. 132 (2010)]
heterotypic synonym
Hungateiclostridiaceae Zhang et al. 2018, nom. illeg. 2)
Lineage( full )
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales
   Entrez records   
Database name Subtree links Direct links
Nucleotide 686,249 87
Protein 3,479,898 21,550
Structure 440 -
Genome 479 -
Popset 272 251
Conserved Domains 13 -
GEO Datasets 642 -
PubMed Central 38,387 15,201
Gene 170,760 -
SRA Experiments 4,352 34
Protein Clusters 3,282 -
Identical Protein Groups 8,001,499 21,329
BioProject 1,715 18
BioSample 75,415 53
Assembly 19,098 -
PubChem BioAssay 26 -
Taxonomy 1,596 1

Notes:

Comments and References:
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Tindall BJ (2019b), PubMed: abstract
Tindall, B.J. "The names Hungateiclostridium Zhang et al. 2018, Hungateiclostridium thermocellum (Viljoen et al. 1926) Zhang et al. 2018, Hungateiclostridium cellulolyticum (Patel et al. 1980) Zhang et al. 2018, Hungateiclostridium aldrichii (Yang et al. 1990) Zhang et al. 2018, Hungateiclostridium alkalicellulosi (Zhilina et al. 2006) Zhang et al. 2018, Hungateiclostridium clariflavum (Shiratori et al. 2009) Zhang et al. 2018, Hungateiclostridium straminisolvens (Kato et al. 2004) Zhang et al. 2018 and Hungateiclostridium saccincola (Koeck et al. 2016) Zhang et al. 2018 contravene Rule 51b of the International Code of Nomenclature of Prokaryotes and require replacement names in the genus Acetivibrio Patel et al. 1980." Int. J. Syst. Evol. Microbiol. (2019) 69(12):3927-3932.
Validation List No. 132 (2010)
Validation List No. 132: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2010) 60(3):469-472.
Yanagita K et al. (2003)
Yanagita, K., Manome, A., Meng, X.-Y. , Hanada, S., Kanagawa, T., Tsuchida, T., Mackie, R.I., and Kamagata, Y. "Flow cytometric sorting, phylogenetic analysis and in situ detection of Oscillospira guilliermondii, a large, morphologically conspicuous but uncultured ruminal bacterium." Int. J. Syst. Evol. Microbiol. (2003) 53:1609-1614. Published online 9 May 2003: DOI 10.1099/ijs.0.02541-0
Zhang X et al. (2018)
Zhang, X., Tu, B., Dai, L.-r., Lawson, P.A., Zheng, Z.-z., Liu, L.-Y., Deng, Y., Zhang, H., and Cheng, L. "Petroclostridium xylanilyticum gen. nov., sp. nov., a xylan-degrading bacterium isolated from an oilfield, and reclassification of clostridial cluster III members into four novel genera in a new Hungateiclostridiaceae fam. nov." Int. J. Syst. Evol. Microbiol. (2018) 68:3197-3211.
Rainey FA (2009c)
Rainey, F.A. "Family VIII. Ruminococcaceae fam. nov." In: P. De Vos, G.M. Garrity, D. Jones, N.R. Krieg, W. Ludwig, F.A. Rainey, K.H. Schleifer, and W.B. Whitman (eds): Bergey's Manual of Systematic Bacteriology, second edition, vol. 3 (The Firmicutes), Springer, Dordrecht, Heidelberg, London, New York. (2009) p. 1016. [No PubMed record available.]
Tindall BJ (2019b), doi:10.1099/ijsem.0.003685
Tindall, B.J. "The names Hungateiclostridium Zhang et al. 2018, Hungateiclostridium thermocellum (Viljoen et al. 1926) Zhang et al. 2018, Hungateiclostridium cellulolyticum (Patel et al. 1980) Zhang et al. 2018, Hungateiclostridium aldrichii (Yang et al. 1990) Zhang et al. 2018, Hungateiclostridium alkalicellulosi (Zhilina et al. 2006) Zhang et al. 2018, Hungateiclostridium clariflavum (Shiratori et al. 2009) Zhang et al. 2018, Hungateiclostridium straminisolvens (Kato et al. 2004) Zhang et al. 2018 and Hungateiclostridium saccincola (Koeck et al. 2016) Zhang et al. 2018 contravene Rule 51b of the International Code of Nomenclature of Prokaryotes and require replacement names in the genus Acetivibrio Patel et al. 1980." Int. J. Syst. Evol. Microbiol. (2019) 69(12):3927-3932.
Peshkoff MA (1940)
Peshkoff, M.A. "Phylogenics of new microbes Caryophanon latum and Caryophanon tenus - intermediate organisms between the Cyanophyceae and Bacteria." Zhurnal Obshchei Biologii (J. Gen. Biol., Moscow) (1940) 1:597-617. [No PubMed record available.]
Oscillospiraceae classification
The family Oscillospiraceae Peshkoff 1940 (type genus Oscillospira) is currently classified under order Lactobacillales, class Bacilli in the most recent taxonomic outline for Bergey's Manual of Systematic Bacteriology, second edition. However, there is no type strain for the type species Oscillospira guilliermondii. The work of Yanagita et al. (2003) indicates that this species is better classified within the order Eubacteriales (syn. Clostridiales), class Clostridia. Consequently, the family Oscillospiraceae is so classified within the NCBI taxonomy database pending final resolution of the matter.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
GOLD: 2 Organisms organism-specific Genomes On Line Database
5 records from this provider organism-specific Integrated Microbial Genomes
Oscillospiraceae taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Ruminococcaceae taxonomy/phylogenetic Ocean Biogeographic Information System
Oscillospiraceae | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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