Taxonomy browser (Pseudonocardiaceae)

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Taxonomy browser (Pseudonocardiaceae)

Pseudonocardiaceae

Taxonomy ID: 2070 (for references in articles please use NCBI:txid2070)

current name

Pseudonocardiaceae Embley et al. 1989 in [Validation List No. 29 (1989)]

homotypic synonym:

"Pseudonocardiaceae" Embley et al. 1988, effective name¹⁾

Pseudonocardiaceae (Warwick et al. 1994) (sic) emend. Stackebrandt et al. 1997, emended name²⁾

Pseudonocardiaceae Embley et al. 1989 emend. Stackebrandt et al. 1997, emended name³⁾

Pseudonocardiaceae Embley et al. 1989 emend. Zhi et al. 2009, emended name⁴⁾

Pseudonocardiaceae Embley et al. 1989 emend. Labeda et al. 2011, emended name⁵⁾

Pseudonocardiaceae Embley et al. 1989 emend. Nouioui et al. 2018, emended name⁶⁾ in [Nouioui I et al. (2018c)]

Pseudonocardiaceae Embley et al. 1989 emend. Teo et al. 2021, emended name⁷⁾ in [Teo WFA et al. (2021b)]

NCBI BLAST name: high G+C Gram-positive bacteria
Rank: family
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

Actinosynnemataceae Labeda and Kroppenstedt 2000

homotypic synonym:

Actinosynnemataceae Labeda and Kroppenstedt 2000 emend. Zhi et al. 2009, emended name⁸⁾

Lineage( full ): cellular organisms; Bacteria; Bacillati; Actinomycetota; Actinomycetes; Pseudonocardiales

Entrez records
Database name	Subtree links	Direct links
Nucleotide	197,584	1
Protein	7,289,674	1,791
Structure	417	-
Genome	293	-
Popset	641	582
Conserved Domains	7	6
GEO Datasets	267	-
PubMed Central	6,732	563
Gene	148,685	-
SRA Experiments	865	-
Protein Clusters	27,362	76
Identical Protein Groups	6,048,362	1,673
BioProject	679	1
BioSample	2,001	2
Assembly	1,106	-
PubChem BioAssay	11	-
Taxonomy	2,733	1

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.
3) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.
4) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.
5) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.
6) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.
7) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.
8) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.

Comments and References:

Validation List No. 29 (1989)

VALIDATION LIST No. 29. Int. J. Syst. Bacteriol. (1989) 39:205-206. [Erratum: Int. J. Syst. Evol. Bacteriol. (2008) 58:2672.]

Nouioui I et al. (2018c), doi: 10.3389/fmicb.2018.02007, PubMed: abstract

Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.

Teo WFA et al. (2021b), PubMed: abstract

Teo, W.F.A., Tan, G.Y.A., and Li, W.-J. "Taxonomic note on the family Pseudonocardiaceae based on phylogenomic analysis and descriptions of Allosaccharopolyspora gen. nov. and Halosaccharopolyspora gen. nov." Int. J. Syst. Evol. Microbiol. (2021) 71(10):005075.

Embley MT et al. (1988)

Embley, M.T., Smida, J., and Stackebrandt, E. "The phylogeny of mycolate-less wall chemotype IV Actinomycetes and description of Pseudonocardiaceae fam. nov." Syst. Appl. Microbiol. (1988) 11:16-19. [No PubMed record available.]

Labeda DP & Kroppenstedt RM (2000)

Labeda, D.P., and Kroppenstedt, R.M. "Phylogenetic analysis of Saccharothrix and related taxa: proposal for Actinosynnemataceae fam. nov." Int. J. Syst. Evol. Microbiol. (2000) 50:331-336.

Labeda DP et al. (2011)

Labeda, D.P., Goodfellow, M., Chun, J., Zhi, X.-Y., and Li, W.-J. "Reassessment of the systematics of the suborder Pseudonocardineae: transfer of the genera within the family Actinosynnemataceae Labeda and Kroppenstedt 2000 emend. Zhi et al. 2009 into an emended family Pseudonocardiaceae Embley et al. 1989 emend. Zhi et al. 2009." Int. J. Syst. Evol. Microbiol. (2011) 61:1259-1264.

Ochi K (1995)

Ochi, K. "Amino acid sequence analysis of ribosomal protein AT-L30 from members of the family Pseudonocardiaceae." Int. J. Syst. Bacteriol. (1995) 45:110-115.

Stackebrandt E et al. (1997b)

Stackebrandt, E., Rainey, F.A., and Ward-Rainey, N.L. "Proposal for a new hierarchic classification system, Actinobacteria classis nov." Int. J. Syst. Bacteriol. (1997) 47:479-491. [No PubMed record available.]

Warwick S et al. (1994)

Warwick, S., Bowen, T., McVeigh, H., and Embley, T.M. "A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia." Int. J. Syst. Bacteriol. (1994) 44:293-299.

Zhi XY et al. (2009)

Zhi, X.-Y., Li, W.-J., and Stackebrandt, E. "An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa." Int. J. Syst. Evol. Microbiol. (2009) 59(3):589-608.

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Pseudonocardiaceae	taxonomy/phylogenetic	Encyclopedia of life
Pseudonocardiaceae	taxonomy/phylogenetic	Lifemap
OMA	taxonomy/phylogenetic	OMA Browser: Orthologous MAtrix
Pseudonocardiaceae	taxonomy/phylogenetic	Ocean Biogeographic Information System
Pseudonocardiaceae \| SeqCode Registry	taxonomy/phylogenetic	SeqCode Registry
Wikipedia	taxonomy/phylogenetic	iPhylo

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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