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Taxonomy browser (Planctomycetota)

Planctomycetota

Taxonomy ID: 203682 (for references in articles please use NCBI:txid203682)
current name
Planctomycetota corrig. Garrity and Holt 2021 in [Oren A & Garrity GM (2021)]
homotypic synonym:
"Planctomycetota" Whitman et al. 2018, effective name 1) in [Whitman WB et al. (2018)]
"Planctomycetes" Garrity and Holt 2001 in [Garrity GM & Holt JG (2001)]
homotypic synonym:
"Planctomycetaeota" Oren et al. 2015, effective name, orth. var. in [Oren A et al. (2015)]
homotypic synonym:
"Planctomycetes" Garrity and Holt 2001 emend. Ward 2011, effective name, emended name in [Ward NL (2011)]
equivalent:
Planctomycetes
NCBI BLAST name: bacteria
Rank: phylum
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Planctobacteria" (Cavalier-Smith 1987) Cavalier-Smith 2002, effective name 2) in [Cavalier-Smith T (2002)]
basionym:
"Planctobacteria" Cavalier-Smith 1987, effective name in [Cavalier-Smith T (1987)]
homotypic synonym:
"Planctobacteria" (Cavalier-Smith 1987) Cavalier-Smith 2002 emend. Cavalier-Smith 2020, effective name, emended name in [Cavalier-Smith T and Chao EE (2020)]
Lineage( full )
cellular organisms; Bacteria; PVC group
   Entrez records   
Database name Subtree links Direct links
Nucleotide 648,098 -
Protein 3,015,391 -
Structure 111 -
Genome 359 -
Popset 1,026 807
Conserved Domains 25 3
GEO Datasets 92 -
PubMed Central 9,539 883
Gene 61,005 -
SRA Experiments 2,781 22
Protein Clusters 15,032 -
Identical Protein Groups 12,101,843 -
BioProject 545 9
BioSample 15,160 42
Assembly 7,971 -
Taxonomy 1,512 1

Notes:

Comments and References:
Oren A & Garrity GM (2021), PubMed: abstract
Oren, A., and Garrity, G.M. "Valid publication of the names of forty-two phyla of prokaryotes." Int. J. Syst. Evol. Microbiol. (2021) 71(10):005056.
Whitman WB et al. (2018), PubMed: abstract
Whitman, W.B., Oren, A., Chuvochina, M., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rossello-Mora, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Ventura, S. "Proposal of the suffix -ota to denote phyla. Addendum to 'Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes'." Int. J. Syst. Evol. Microbiol. (2018) 68(3):967-969.
Oren A et al. (2015), PubMed: abstract
Oren, A., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rosselló-Móra, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Whitman, W.B. "Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes." Int. J. Syst. Evol. Microbiol. (2015) 65(11):4284-4287.
Garrity GM & Holt JG (2001)
Garrity, G.M., and Holt, J.G. "The Road Map to the Manual." In: Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 1 (The Archaea and the deeply branching and phototrophic Bacteria) (D.R. Boone and R.W. Castenholz, eds.), Springer-Verlag, New York (2001). p. 119-166. [No PubMed record available.]
Ward NL (2011)
Ward, N.L. "Phylum XXV. Planctomycetes Garrity and Holt 2001, 137 emend. Ward (this volume)." In: Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 4 (The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyglomi, Gemmatimonadetes, Lentisphaerae, Verrumicrobia, Chlamydiae, and Planctomycetes) (N.R. Krieg, J.T. Staley, D.R. Brown, B.P. Hedlund, B.J. Paster, N.L. Ward, W. Ludwig, and W.B. Whitman, eds.), Springer-Verlag, New York (2011). p. 879. [No PubMed record available.]
Cavalier-Smith T (2002), PubMed: abstract
Cavalier-Smith, T. "The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification." Int. J. Syst. Evol. Microbiol. (2002) 52(1):7-76.
Cavalier-Smith T (1987), PubMed: abstract
Cavalier-Smith, T. "The origin of eukaryotic and archaebacterial cells." Ann. N.Y. Acad. Sci. (1987) 503(1):17-54.
Cavalier-Smith T and Chao EE (2020), doi: 10.1007/s00709-019-01442-7, PubMed: abstract
Cavalier-Smith, T., and Chao, E.E. "Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria)." Protoplasma (2020) 257(3):621-753.
Butler MK & Fuerst JA (2004)
Butler, M.K., and Fuerst, J.A. "Comparative analysis of ribonuclease P RNA of the planctomycetes." Int. J. Syst. Evol. Microbiol. (2004) 54:1333-1344. Published online 9 February 2004: DOI 10.1099/ijs.0.03013-0
Scheuner C et al. (2014)
Scheuner, C., Tindall, B.J., Lu, M., Nolan, M., Lapidus, A., Cheng, J.-F., Goodwin, L., Pitluck, S., Huntemann, M., Liolios, K., Pagani, I., Mavromatis, K., Ivanova, N., Pati, A., Chen, A., Palaniappan, K., Jeffries, C.D., Hauser, L., Land, M., Mwirichia, R., Rohde, M., Abt, B., Detter, J.C., Woyke, T., Eisen, J.A., Markowitz, V., Hugenholtz, P., Goker, M., Kyrpides, N.C., and Klenk, H.-P. "Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305(T)), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae." Stand. Genomic Sci. (2014) 9:10.
Teeling H et al. (2004)
Teeling, H., Lombardot, T., Bauer, M., Ludwig, W., and Glockner, F.O. "Evaluation of the phylogenetic position of the planctomycete 'Rhodopirellula baltica' SH 1 by means of concatenated ribosomal protein sequences, DNA-directed RNA polymerase subunit sequences and whole genome trees." Int. J. Syst. Evol. Microbiol. (2004) 54:791-801. Published online 5 December 2003: DOI 10.1099/ijs.0.02913-0

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Planctomycetes taxonomy/phylogenetic Encyclopedia of life
41 records from this provider organism-specific Integrated Microbial Genomes
Planctomycetes taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Planctomycetes Fukunaga, Kurahashi, Sakiyama, Ohuchi, Yokota & Harayama, 2009 taxonomy/phylogenetic Ocean Biogeographic Information System
Planctomycetota | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
2 records from provider taxonomy/phylogenetic World Register of Marine Species
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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