Taxonomy browser (Mycolicibacterium smegmatis)

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Taxonomy browser (Mycolicibacterium smegmatis)

Mycolicibacterium smegmatis

Taxonomy ID: 1772 (for references in articles please use NCBI:txid1772)

current name

Mycolicibacterium smegmatis (Lehmann and Neumann 1899) Gupta et al. 2018 in [Gupta RS et al. (2018), Validation List No. 181 (2018)]

type strain of Mycolicibacterium smegmatis: ATCC :19420, CCUG :21002, CCUG :21815, CIP:104444, DSM :43756, JCM :5866, JCM :6386, NCTC :8159, NRRL :B-14616, VKM:Ac-1239

homotypic synonym:

"Bacillus smegmatis" Trevisan 1889, effective name¹⁾

"Bacterium smegmatis" (Trevisan 1889) Migula 1900, effective name²⁾

"Mycobacterium paratuberculosis smegmatis" Bustinza 1951, effective name³⁾

Mycobacterium smegmatis (Trevisan, 1889) Lehmann and Neumann 1899 emend. Nouioui et al. 2018, emended name⁴⁾ in [Nouioui I et al. (2018c)]

Mycobacterium smegmatis (Trevisan 1889) Lehmann and Neumann 1899 (Approved Lists 1980) in [Skerman VBD et al. (1980)]

NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)

Lineage( full ): cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycolicibacterium

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	10,531	9,673	365
Protein	254,159	216,716	-
Structure	692	159	-
Genome	1	1	-
Popset	41	41	-
Conserved Domains	1	-	-
GEO Datasets	973	594	-
PubMed Central	9,234	9,234	-
Gene	27,376	13,539	-
SRA Experiments	1,913	794	-
Protein Clusters	5,757	5,757	-
Identical Protein Groups	33,504	30,671	-
BioProject	211	122	-
BioSample	1,859	824	42
Assembly	70	63	-
PubChem BioAssay	1,427	1,307	-
Taxonomy	12	1	-

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.

Comments and References:

Gupta RS et al. (2018), doi: 10.3389/fmicb.2018.00067, PubMed: abstract

Gupta, R.S., Lo, B., and Son, J. "Phylogenomics and comparative genomic studies robustly support division of the genus Mycobacterium into an emended genus Mycobacterium and four novel genera." Front. Microbiol. (2018) 9:67.

Validation List No. 181 (2018), PubMed: abstract

Validation List No. 181: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2018) 68(5):1411-1417.

Nouioui I et al. (2018c), doi: 10.3389/fmicb.2018.02007, PubMed: abstract

Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.

Lehmann KB & Neumann R (1899)

Lehmann, K.B., and Neumann, R. Lehmann's Medizin, Handatlanten. X. Atlas und Grundriss der Bakteriologie und Lehrbuch der speziellen Bakteriologishcen Diagnostik. 2. Aufl. 1899. pp. 1-497. [No PubMed record available.]

Trevisan V (1889)

Trevisan, V. I generie e le specie della Batteriacee. (1889) Zanaboni and Gabuzzi, Milan, pp. 1-35. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Mycobacterium smegmatis	meta-databases	BacDive
2 records from this provider	organism-specific	BioCyc
Mycobacterium smegmatis (Trevisan 1889) Lehmann and Neumann 1899 (Approved Lists 1980)	taxonomy/phylogenetic	Encyclopedia of life
2 records from this provider	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Mycobacterium smegmatis	culture/stock collections	Global Catalogue of Microorganisms
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
4 records from this provider	organism-specific	Integrated Microbial Genomes
Mycobacterium smegmatis	taxonomy/phylogenetic	Lifemap
Bacillus smegmatis	taxonomy/phylogenetic	Systematic Mycology and Microbiology Laboratory, Fungal Databases
Wikipedia	taxonomy/phylogenetic	iPhylo

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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