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Taxonomy browser (Clostridium)

Clostridium

Taxonomy ID: 1485 (for references in articles please use NCBI:txid1485)
current name
Clostridium Prazmowski 1880 (Approved Lists 1980) emend. Lawson and Rainey 2016, nom. approb. 1)
NCBI BLAST name: firmicutes
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Anaerobacter Duda et al. 1996 in [Validation List No. 57 (1996)]
homotypic synonym:
"Anaerobacter" Duda et al. 1987, effective name in [Duda VI et al. (1987)]
Lineage( full )
cellular organisms; Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 534,445 40
Protein 6,302,488 195,446
Structure 833 1
Genome 156 1
Popset 948 738
Conserved Domains 48 44
GEO Datasets 1,647 -
PubMed Central 90,834 90,804
Gene 335,925 -
SRA Experiments 6,841 161
Protein Clusters 31,223 7,826
Identical Protein Groups 4,074,827 195,446
BioProject 1,846 34
BioSample 22,400 188
Assembly 8,771 -
PubChem BioAssay 762 9
Taxonomy 2,902 1

Notes:

Comments and References:
Validation List No. 57 (1996), PubMed: abstract
VALIDATION LIST No. 57. Int. J. Syst. Bacteriol. (1996) 46(2):625-626.
Duda VI et al. (1987)
Duda, V.I., Lebedinsky, A.V., Mushegjan, M.S., and Mitjushina, L.L. "A new anaerobic bacterium forming up to five endospores per cell - Anaerobacter polyendosporus gen. et spec. nov." Arch. Microbiol. (1987) 148(2):121-127.
Clostridium (LPSN link)
Anaerobacter (LPSN link)
Lawson PA & Rainey FA (2016)
Lawson, P.A., and Rainey, F.A. "Proposal to restrict the genus Clostridium (Prazmowski) to Clostridium butyricum and related species." Int. J. Syst. Evol. Microbiol. (2016) 66:1009-1016.
Prazmowski A (1880)
Prazmowski, A. "Untersuchung uber die Entwickelungsgeschichte und Fermentwirking einiger Bacterien-Arten." Inaugural Dissertation. Hugo Voigt, Leipzig (1880). pp.1-58. [No PubMed record available.]
Tindall BJ (2016)
Tindall, B.J. "Priority of the genus name Clostridium Prazmowski 1880 (Approved Lists 1980) vs Sarcina Goodsir 1842 (Approved Lists 1980) and the creation of the illegitimate combinations Clostridium maximum (Lindner 1888) Lawson and Rainey 2016 and Clostridium ventriculi (Goodsir 1842) Lawson and Rainey 2016 that may not be used." Int. J. Syst. Evol. Microbiol. (2016) 66:4890-4894.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Yu HY et al. (2019)
Yu, H.Y., Meade, A., and Liu, S.J. "Phylogeny of Clostridium spp. based on conservative genes and comparisons with other trees." Mikrobiologiya (2019) 88:469-478.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Clostridium taxonomy/phylogenetic Encyclopedia of life
GOLD: 15 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Clostridium culture/stock collections Global Catalogue of Microorganisms
17 records from this provider organism-specific Integrated Microbial Genomes
Clostridium Prazmowski, 1880 taxonomy/phylogenetic Integrated Taxonomic Information System
Clostridium taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
2 records from this provider taxonomy/phylogenetic Ocean Biogeographic Information System
Clostridium | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Clostridium taxonomy/phylogenetic TreeBase
2 records from this provider taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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