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Taxonomy browser (Bacillus amyloliquefaciens)

Bacillus amyloliquefaciens

Taxonomy ID: 1390 (for references in articles please use NCBI:txid1390)
current name
Bacillus amyloliquefaciens (ex Fukomoto 1943) Priest et al. 1987
type strain of Bacillus amyloliquefaciens: ATCC:23350, BCRC:11601, CCUG:28519, CFBP:4246, CIP:103265, DSM:7, HAMBI:1824, IFO:15535, BCCM/LMG:12234, BCCM/LMG:9814, NBRC:15535, NCAIM B.01704, NCIMB:12077, NRRL:B-14393, personal::Fukumoto strain F
homotypic synonym:
"Bacillus amyloliquifaciens" (sic) Fukumoto 1943, effective name, orth. var. 1),2)
Bacillus amyloliquefaciens (ex Fukumoto 1943) Priest et al. 1987 emend. Wang et al. 2008, emended name 3)
Bacillus amyloliquefaciens subsp. amyloliquefaciens (Priest et al. 1987) Borriss et al. 2011
includes:
Bacillus sp. M16(2010)
Bacillus sp. M7(2010)
Bacillus sp. BHR1P1B2
Bacillus sp. BHR3P1B2
Bacillus sp. BTSS3
Bacillus sp. CCF7
Bacillus sp. EnB-bsys5
Bacillus sp. HU1
Bacillus sp. PUE-MAN5
Bacillus sp. 39(2011)
Bacillus sp. 51(2011)
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus amyloliquefaciens group
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 18,902 18,382 42
Protein 529,532 476,990 -
Structure 157 157 -
Genome 1 1 -
Popset 706 706 -
GEO Datasets 60 60 -
PubMed Central 4,610 4,610 -
Gene 41,540 8,172 -
SRA Experiments 287 283 -
Protein Clusters 1,890 1,890 -
Identical Protein Groups 170,961 165,834 -
BioProject 269 249 -
BioSample 522 495 6
Assembly 242 224 -
PubChem BioAssay 23 23 -
Taxonomy 26 1 -

Notes:

Comments and References:

Borriss R et al. (2011)
Borriss, R., Chen, X.-H., Rueckert, C., Blom, J., Becker, A., Baumgarth, B., Fan, B., Pukall, R., Schumann, P., Sproer, C., Junge, H., Vater, J., Puhler, A., and Klenk, H.-P. "Relationship of Bacillus amyloliquefaciens clades associated with strains DSM 7T and FZB42T: a proposal for Bacillus amyloliquefaciens subsp. amyloliquefaciens subsp. nov. and Bacillus amyloliquefaciens subsp. plantarum subsp. nov. based on complete genome sequence comparisons." Int. J. Syst. Evol. Microbiol. (2011) 61:1786-1801.
Dunlap CA et al. (2015)
Dunlap, C.A., Kim, S.J., Kwon, S.W., and Rooney, A.P. "Phylogenomic analysis shows that Bacillus amyloliquefaciens subsp. plantarum is a later heterotypic synonym of Bacillus methylotrophicus." Int. J. Syst. Evol. Microbiol. (2015) 65:2104-2109.
Dunlap CA et al. (2016)
Dunlap, C.A., Kim, S.-J., Kwon, S.-W., and Rooney, A.P. "Bacillus velezensis is not a later heterotypic synonym of Bacillus amyloliquefaciens; Bacillus methylotrophicus, Bacillus amyloliquefaciens subsp. plantarum and 'Bacillus oryzicola' are later heterotypic synonyms of Bacillus velezensis based on phylogenomics." Int. J. Syst. Evol. Microbiol. (2016) 66:1212-1217.
Fan B et al. (2017)
Fan, B., Blom, J., Klenk, H.-P., and Borriss, R. "Bacillus amyloliquefaciens, Bacillus velezensis, and Bacillus siamensis form an 'Operational Group B. amyloliquefaciens' within the B. subtilis species complex." Front. Microbiol. (2017) 8:22.
Fukumoto J (1943)
Fukumoto, J. "Studies on the production of bacterial amylase. I. Isolation of bacteria secreting potent amylases and their distribution." J. Agric. Chem. Soc. Jpn. (1943) 19:487-503. [No PubMed record available.]
Heyndrickx M et al. (1997)
Heyndrickx, M., Lebbe, L., Vancanneyt, M., Kersters, K., De Vos, P., Logan, N.A., Forsyth, G., Nazli, S., Ali, N., and Berkeley, R.C.W. "A polyphasic reassessment of the genus Aneurinibacillus, reclassification of Bacillus thermoaerophilus (Meier-Stauffer et al. 1996) as Aneurinibacillus thermoaerophilus comb. nov., and emended descriptions of A. aneurinilyticus corrig., and A. migulanus, and A. thermoaerophilus." Int. J. Syst. Bacteriol. (1997) 47:808-817. [No PubMed record available.]
Priest FG et al. (1987)
Priest, F.G., Goodfellow, M., Shute, L.A., and Berkeley, R.C.W. "Bacillus amyloliquefaciens sp. nov., nom. rev." Int. J. Syst. Bacteriol. (1987) 37:69-71. [No PubMed record available.]
Ruiz-Garcia C et al. (2005)
Ruiz-Garcia, C., Bejar, V., Martinez-Checa, F., Llamas, I,. and Quesada, E. "Bacillus velezensis sp. nov., a surfactant-producing bacterium isolated from the river Velez in Malaga, southern Spain." Int. J. Syst. Evol. Microbiol. (2005) 55:191-195. Published online 30 July 2004. doi:10.1099/ijs.0.63310-0. [N.B.: the type strain is listed as CECT 5686 in the abstract, but as CECT 5687 in the body of the text. CECT 5686 is apparently correct, according to the annotation at the CECT.]
Wang LT et al. (2008)
Wang, L.-T., Lee, F.-L., Tai, C.-J., and Kuo, H.-P. "Bacillus velezensis is a later heterotypic synonym of Bacillus amyloliquefaciens." Int. J. Syst. Evol. Microbiol. (2008) 58:671-675.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Bacillus amyloliquefaciens meta-databases BacDive
16 records from this provider organism-specific BioCyc
Bacillus amyloliquefaciens (ex Fukumoto 1943) Priest et al., 1987 taxonomy/phylogenetic Encyclopedia of life
GOLD: 67 Organisms organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Bacillus amyloliquefaciens culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
54 records from this provider organism-specific Integrated Microbial Genomes
Bacillus amyloliquefaciens taxonomy/phylogenetic Lifemap
Bacillus amyloliquefaciens | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Bacillus amyloliquefaciens (ex Fukomoto, 1943) Priest, Goodfellow, Shute & Berkeley, 1987 taxonomy/phylogenetic World Register of Marine Species
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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