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Taxonomy browser (Caldicellulosiruptor danielii)

Caldicellulosiruptor danielii

Taxonomy ID: 1387557 (for references in articles please use NCBI:txid1387557)
current name
"Caldicellulosiruptor danielii" Lee et al. 2018, effective name 1) in [Lee LL et al. (2018)]
type strain of "Caldicellulosiruptor danielii": personal::Wai35.B1, DSM:8977
homotypic synonym:
"Anaerocellum danielii" (Lee et al. 2018) Manesh et al. 2024, effective name 2),3) in [Manesh MJH et al. (in press_2024)]
includes:
Caldicellulosiruptor sp. Wai35.B1
NCBI BLAST name: firmicutes
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Bacillota; Bacillota incertae sedis; Caldicellulosiruptorales; Caldicellulosiruptoraceae; Caldicellulosiruptor
   Entrez records   
Database name Direct links Links from type
Nucleotide 7 7
Protein 5,390 -
Structure 3 -
Genome 1 -
PubMed Central 5 -
SRA Experiments 7 -
Identical Protein Groups 2,768 -
BioProject 3 -
BioSample 2 2
Assembly 2 -
Taxonomy 1 -

Notes:

Comments and References:

Lee LL et al. (2018), doi: 10.1128/AEM.02694-17, PubMed: abstract
Lee, L.L., Blumer-Schuette, S.E., Izquierdo, J.A., Zurawski, J.V., Loder, A.J., Conway, J.M., Elkins, J.G., Podar, M., Clum, A., Jones, P.C., Piatek, M.J., Weighill, D.A., Jacobson, D.A., Adams, M.W.W., and Kelly, R.M. "Genus-wide assessment of lignocellulose utilization in the extremely thermophilic genus Caldicellulosiruptor by genomic, pangenomic, and metagenomic analyses." Appl. Environ. Microbiol. (2018) 84(9):e02694-17.
Manesh MJH et al. (in press_2024), PubMed: abstract
Manesh, M.J.H., Bing, R.G., Willard, D.J., Adams, M.W.W., and Kelly, R.M. "Complete genome sequence for the extremely thermophilic bacterium Anaerocellum danielii (DSM:8977)." Microbiol. Resour. Announc. (in press)
Lee LL et al. (2015)
Lee, L.L., Izquierdo, J.A., Blumer-Schuette, S.E., Zurawski, J.V., Conway, J.M., Cottingham, R.W., Huntemann, M., Copeland, A., Chen, I-M.A., Kyrpides, N., Markowitz, V., Palaniappan, K., Ivanova, N., Mikhailova, N., Ovchinnikova, G., Andersen, E., Pati, A., Stamatis, D., Reddy, T.B.K., Shapiro, N., Nordberg, H.P., Cantor, M.N., Hua, S.X., Woyke, T., and Kelly, R.M. "Complete genome sequences of Caldicellulosiruptor sp. strain Rt8.B8, Caldicellulosiruptor sp. strain Wai35.B1, and 'Thermoanaerobacter cellulolyticus'." Genome Announc. (2015) 3:e00440-15.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
GOLD: Go0035187 organism-specific Genomes On Line Database
2558860987: Caldicellulosiruptor danielii Wai35.B1, DSM 8977 organism-specific Integrated Microbial Genomes
Notes:
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A list of our current non-bibliographic LinkOut providers can be found here.

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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