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Taxonomy browser (Coffea arabica)

Coffea arabica

Taxonomy ID: 13443 (for references in articles please use NCBI:txid13443)
current name
Coffea arabica L., 1753
Genbank common name: coffee
NCBI BLAST name: eudicots
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
common name(s) arabica coffee
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Gardenieae complex; Bertiereae - Coffeeae clade; Coffeeae; Coffea
   Entrez records   
Database name Direct links
Nucleotide 263,646
Protein 72,695
Structure 1
Genome 1
Popset 63
GEO Datasets 148
PubMed Central 2,710
Gene 56,903
SRA Experiments 4,004
Protein Clusters 77
Identical Protein Groups 53,774
BioProject 82
BioSample 2,906
Assembly 5
PubChem BioAssay 94
Taxonomy 1

Comments and References:

image:Coffea arabica
GRIN taxonomy
Name verified on date of entry into database in: USDA, ARS, National Genetic Resources Program. Germplasm Resources Information Network - (GRIN) [Online Database]. National Germplasm Resources Laboratory, Beltsville, Maryland.
TROPICOS (Jan 09, 2015)
Name accessed on 9 January 2015, in: Tropicos.org. Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at: http://www.tropicos.org/
World Checklist of Rubiaceae (Mar 13, 2017)
Name accessed on 13 March 2017 in: Govaerts, R., Ruhsam, M., Andersson, L., Robbrecht, E., Bridson, D., Davis, A., Schanzer, I. & Sonke, B. World Checklist of Rubiaceae. The Board of Trustees of the Royal Botanic Gardens, Kew. Published on the Internet; http://www.kew.org/wcsp/rubiaceae/

Genome Information

Go to NCBI genomic BLAST page for Coffea arabica

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Coffea arabica taxonomy taxonomy/phylogenetic Arctos Specimen Database
2 records from this provider supplemental materials Dryad Digital Repository
Coffea arabica L. taxonomy/phylogenetic Encyclopedia of life
GOLD: Go0517637 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Coffea arabica L. taxonomy/phylogenetic Integrated Taxonomic Information System
Coffea arabica taxonomy/phylogenetic PLANTS Database (USDA/NRCS)
Coffea arabica (L.) herbarium/museum collections PlantaeDB, University of Bucharest
Coffea arabica taxonomy/phylogenetic Plants of the World Online
Coffea arabica taxonomy/phylogenetic The International Plant Names Index
Coffea arabica L. taxonomy/phylogenetic USDA-ARS GRIN Taxonomy
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Coffea arabica organism-specific WebScipio - eukaryotic gene identification
Coffea arabica Linnaeus taxonomy/phylogenetic World Register of Marine Species
diArk: Coffea arabica organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Show organism modifiers


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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