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Taxonomy browser (Amborella trichopoda)

Amborella trichopoda

Taxonomy ID: 13333 (for references in articles please use NCBI:txid13333)
current name
Amborella trichopoda Baill., 1873
NCBI BLAST name: flowering plants
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
   Entrez records   
Database name Direct links
Nucleotide 146,622
Protein 59,201
Genome 1
Popset 237
GEO Datasets 10
PubMed Central 1,755
Gene 32,383
SRA Experiments 187
Protein Clusters 75
Identical Protein Groups 43,980
BioProject 20
BioSample 174
Assembly 2
Taxonomy 1

Comments and References:

TROPICOS (May 19, 2013)
Name accessed on 19 May 2013 in: Tropicos.org. Missouri Botanical Garden, 2008 - 4344 Shaw Boulevard, Saint Louis, Missouri 63110, U.S.A. on line at: http://www.tropicos.org/

Genome Information

Go to NCBI genomic BLAST page for Amborella trichopoda
Genome view: 11 chromosomes
Names 1 2 3 4 5 6 7 8 9 10 11

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2 records from this provider supplemental materials Dryad Digital Repository
3 records from this provider organism-specific Genomes On Line Database
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Amborella trichopoda (Baill.) herbarium/museum collections PlantaeDB, University of Bucharest
Amborella trichopoda taxonomy/phylogenetic Plants of the World Online
plazi taxonomy/phylogenetic Plazi
Amborella trichopoda taxonomy/phylogenetic The International Plant Names Index
ToL taxonomy/phylogenetic Tree of Life
search W3TROPICOS taxonomy/phylogenetic Vascular Tropicos
WebScipio: Amborella trichopoda organism-specific WebScipio - eukaryotic gene identification
diArk: Amborella trichopoda organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

To hide organism modifiers click here
cultivar
Milvus [2 72160] National Tropical Botanic Garden [1 8773] National Tropical Botanic Garden_F [1 8899]
isolate
116N [1 1 1] 2006-2975 [3 3] 2008-1967 [3 3] 2008-1968 [4 4]
75-5 [3 3] AtPIN1 [1 1] AtPIN11 [1 1] AtPIN12 [1 1]
AtPIN3 [1 1] Bonn [1 1] Gainesville, FL [2] N116 [1 1]
NCAM_013 [1 1] NCAOC_010 [1 1] NCBA_02 [1 1] NCBO_010 [1 1]
NCDOB_010 [1 1] NCMF_01 [1 1] NCMO_08 [1 1] NCPO_012 [1 1]
NCPWB_011 [1 1] NCTC_012 [1 1] NCTOB_012 [1 1] Q1620-1 [1 1]
Qiu 97123 [1 1 1] Santa Cruz [9] Thien 500 NCU [1] URDJ_2005455 [1 1]
URDJ_2007307 [1 1] URDJ_2010032 [1 1] URDJ_2037591 [1 1] dic81 [3 2]
specimen-voucher
2000.0348, UCBG [1 1 1] B. Hall sn (IND); Qiu 97123 [1 1] Brett Hall [1 1 1] DL8346, HAW [3 1 3]
DNA # Qiu 97123, voucher Brett Hall s.n. [2 2] Qiu 97123 [2 2 2] Qiu 97123 (IND) [1 1 1] RBC s.n. (New Caledonia) [1 1 1]
Suh 44 US [1 1] T. Borsch 3480 (VPI) [1 1 1] U. C. Santa Cruz, CA, USA [1 1] UC Santa Cruz Arboretum 75.5 (SM335) [2 2]
YAMADA030522 (University of Tokyo Herbarium, TI) [1 1]
authority
Amborella trichopoda Baill. [2 2] Amborella trichopoda Baillon [1 1 1] Amborella trichpoda Baill. [1]

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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