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Taxonomy browser (Staphylococcus)

Staphylococcus

Taxonomy ID: 1279 (for references in articles please use NCBI:txid1279)
current name
Staphylococcus Rosenbach 1884 (Approved Lists 1980) in [Skerman VBD et al. (1980)]
homotypic synonym:
Staphylococcus Rosenbach 1884 (Approved Lists 1980) emend. Bello et al. 2023, emended name 1) in [Bello S et al. (2023), List of Changes in Taxonomic Opinion No. 39 (2024)]
NCBI BLAST name: firmicutes
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Aurococcus" Winslow and Rogers 1906, effective name 2)
Lineage( full )
cellular organisms; Bacteria; Bacillati; Bacillota; Bacilli; Bacillales; Staphylococcaceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 3,752,412 902
Protein 44,041,026 192,482
Structure 2,667 3
Genome 66 1
Popset 3,190 2,313
Conserved Domains 120 68
GEO Datasets 5,952 2
PubMed Central 223,027 218,619
Gene 421,990 -
SRA Experiments 175,906 732
GEO Profiles 139,687 -
Protein Clusters 8,380 6,123
Identical Protein Groups 5,967,524 192,478
BioProject 9,720 106
BioSample 204,089 849
Assembly 114,210 -
Genetic Testing Registry 3 -
PubChem BioAssay 35,867 391
Taxonomy 9,206 1

Notes:

Comments and References:

Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Bello S et al. (2023), PubMed: abstract
Bello, S., Mudassir, S.H., Rudra, B., and Gupta, R.S. "Phylogenomic and molecular markers based studies on Staphylococcaceae and Gemella species. Proposals for an emended family Staphylococcaceae and three new families (Abyssicoccaceae fam. nov., Salinicoccaceae fam. nov. and Gemellaceae fam. nov.) harboring four new genera, Lacicoccus gen. nov., Macrococcoides gen. nov., Gemelliphila gen. nov., and Phocicoccus gen. nov." Antonie van Leeuwenhoek (2023) 116(10):937-973.
List of Changes in Taxonomic Opinion No. 39 (2024), PubMed: abstract
Oren, A., and Göker, M. "Notification of changes in taxonomic opinion previously published outside the IJSEM. List of Changes in Taxonomic Opinion no. 39." Int. J. Syst. Evol. Microbiol. (2024) 74(1):006145.
Staphylococcus (LPSN link)
Chesneau O et al. (2000)
Chesneau, O., Morvan, A., Aubert, S., and el Solh, N. "The value of rRNA gene restriction site polymorphism analysis for delineating taxa in the genus Staphylococcus." Int. J. Syst. Evol. Microbiol. (2000) 50:689-697.
Freney J et al. (1999)
Freney, J., Kloos, W.E., Hajek, V., Webster, J.A., Bes, M., Brun, Y., and Vernozy-Rozand, C. "Recommended minimal standards for description of new staphylococcal species. Subcommittee on the taxonomy of staphylococci and streptococci of the InternationalCommittee on Systematic Bacteriology." Int. J. Syst. Bacteriol. (1999) 49:489-502.
Kwok AY et al. (1999)
Kwok, A.Y., Su, S.C., Reynolds, R.P., Bay, S.J., Av-Gay, Y., Dovichi, N.J., and Chow, A.W. "Species identification and phylogenetic relationships based on partial HSP60 gene sequences within the genus Staphylococcus." Int. J. Syst. Bacteriol. (1999) 49:1181-1192.
Kwok AYC & Chaw AW (2003)
Kwok, A.Y.C., and Chow, A.W. "Phylogenetic study of Staphylococcus and Macrococcus species based on partial hsp60 gene sequences." Int. J. Syst. Evol. Microbiol. (2003) 53:87-92. Published online 21 June 2002. DOI 10.1099/ijs.0.02210-0
Mendoza M et al. (1998)
Mendoza, M., Meugnier, H., Bes, M., Etienne, J., and Freney, J. "Identification of Staphylococcus species by 16S-23S rDNA intergenic spacer PCR analysis." Int. J. Syst. Bacteriol. (1998) 48:1049-1055.
Rosenbach FJ (1884)
Rosenbach, F.J. "Microorganismen bei den Wund-Infections-Krankheiten des Menschen." J.F. Bergmann, Wiesbaden (1884) pp. 1-122. [No PubMed record available.]
Shah MM et al. (2007)
Shah, M.M., Iihara, H., Noda, M., Song, S.X., Nhung, P.H., Ohkusu, K., Kawamura, Y., and Ezaki, T. "dnaJ gene sequence-based assay for species identification and phylogenetic grouping in the genus Staphylococcus." Int. J. Syst. Evol. Microbiol. (2007) 57:25-30.
Takahashi T et al. (1999)
Takahashi, T., Satoh, I., and Kikuchi, N. "Phylogenetic relationships of 38 taxa of the genus Staphylococcus based on 16S rRNA gene sequence analysis." Int. J. Syst. Bacteriol. (1999) 49::725-728.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Staphylococcus taxonomy/phylogenetic Encyclopedia of life
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
4 records from this provider organism-specific Integrated Microbial Genomes
Staphylococcus taxonomy/phylogenetic Integrated Taxonomic Information System
Staphylococcus taxonomy/phylogenetic Lifemap
LBSN taxonomy/phylogenetic List of Bacterial names with Standing in Nomenclature
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Staphylococcus taxonomy/phylogenetic Ocean Biogeographic Information System
Staphylococcus | SeqCode Registry taxonomy/phylogenetic SeqCode Registry
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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