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Taxonomy browser (Cereibacter sphaeroides)

Cereibacter sphaeroides

Taxonomy ID: 1063 (for references in articles please use NCBI:txid1063)
current name
Cereibacter sphaeroides (van Niel 1944) Hördt et al. 2020 in [Validation List No. 194 (2020), Hördt A et al. (2020)]
basionym:
Rhodopseudomonas sphaeroides van Niel 1944 (Approved Lists 1980) in [Skerman VBD et al. (1980)]
type strain of Rhodopseudomonas sphaeroides: personal::Van Niels ATH 2.4.1, ATCC:17023, CCUG:31486, CIP:60.6, DSM:158, IFO:12203, NBRC:12203, JCM:6121, BCCM/LMG:2827, KCTC:1434, personal::2.4.1
homotypic synonym:
Rhodobacter sphaeroides (van Niel 1944) Imhoff et al. 1984
Luteovulum sphaeroides (van Niel 1944) Suresh et al. 2020 in [Validation List No. 196 (2020), Suresh G et al. (2020c)]
homotypic synonym:
"Luteovulum sphaeroides" (van Niel 1944) Suresh et al. 2019, effective name in [Suresh G et al. (2019)]
includes:
Rhodobacter sp. ATCC BAA-808
Rubrivivax sp. ATCC 55304
NCBI BLAST name: a-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Rhodococcus capsulatus" Molisch 1907, effective name 1)
heterotypic synonym
"Rhodococcus minor" Molisch 1907, effective name 2)
heterotypic synonym
"Rhodosphaera capsulata" (Molisch) Buchanan 1918, effective name 3)
heterotypic synonym
"Rhodosphaera minor" (Molisch) Bergey et al. 1923, effective name 4)
heterotypic synonym
"Rhodorhagus capsulatus" (sic) (Molisch) Bergey et al. 1925, effective name 5)
heterotypic synonym
"Rhodorhagus minor" (sic) (Molisch) Bergey et al. 1925, effective name 6)
heterotypic synonym
"Rhodorrhagus capsulatus" Bergey et al. 1939, effective name 7)
heterotypic synonym
"Rhodopseudomonas spheroides" (sic) van Niel 1944, effective name 8)
heterotypic synonym
"Rhodorrhagus spheroides" (sic) (van Niel) Brisou 1955, effective name 9)
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Cereibacter
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 4,331 3,505 480
Protein 142,173 109,259 -
Structure 320 226 -
Genome 2 1 -
Popset 22 22 -
Conserved Domains 4 4 -
GEO Datasets 699 332 -
PubMed Central 5,292 5,289 -
Gene 37,192 1,059 -
SRA Experiments 528 233 -
GEO Profiles 37,485 32,130 -
Protein Clusters 4,536 4,536 -
Identical Protein Groups 69,843 64,167 -
BioProject 153 97 -
BioSample 460 303 125
Assembly 38 26 -
PubChem BioAssay 3 3 -
Taxonomy 9 1 -

Notes:

Comments and References:
Validation List No. 194 (2020), PubMed: abstract
Validation List No. 194: "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2020) 70(7):4043-4049.
Hördt A et al. (2020), doi: 10.3389/fmicb.2020.00468, PubMed: abstract
Hördt, A., López, M.G., Meier-Kolthoff, J.P., Schleuning, M., Weinhold, L.-M., Tindall, B.J., Gronow, S., Kyrpides, N.C., Woyke, T., and Göker, M. "Analysis of 1,000+ type-strain genomes substantially improves taxonomic classification of Alphaproteobacteria." Front. Microbiol. (2020) 11:468.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Validation List No. 196 (2020), PubMed: abstract
Validation List No. 196: "List of new names and new combinations that have appeared in effective publications outside of the IJSEM and are submitted for valid publication." Int. J. Syst. Evol. Microbiol. (2020) 70(11):5596-5600.
Suresh G et al. (2020c), doi: 10.3389/fmicb.2020.01111, PubMed: abstract
Suresh, G., Lodha, T.D., Indu, B., Sasikala, C., and Ramana, C.V. "Corrigendum: Taxogenomics resolves conflict in the genus Rhodobacter: A two and half decades pending thought to reclassify the genus Rhodobacter." Front. Microbiol. (2020) 11:1111.
Suresh G et al. (2019), doi: 10.3389/fmicb.2019.02480, PubMed: abstract
Suresh, G., Lodha, T.D., Indu, B., Sasikala, C., and Ramana, C.V. "Taxogenomics resolves conflict in the genus Rhodobacter: A two and half decades pending thought to reclassify the genus Rhodobacter." Front. Microbiol. (2019) 10:2480.
Bergey DH et al. (1923)
Bergey, D.H., Harrison, F.C., Breed, R.S., Hammer B.W., and Huntoon, F.M. Bergey's Manual of Determinative Bacteriology, 1st ed. (1923) The Williams and Wilkins Co., Baltimore, pp. 1-442. [No PubMed record available.]
Buchanan RE (1918)
Buchanan, R.E. "Studies in the nomenclature and classification of the bacteria. V. subgroups and genera of the Bacteriaceae." J. Bacteriol. (1918) 3:27-61. [No abstract available.]
Bergey DH et al. (1925)
Bergey, D.H., Harrison, F.C., Breed, R.S., Hammer B.W., and Huntoon, F.M. Bergey's Manual of Determinative Bacteriology, 2nd ed. (1925) The Williams and Wilkins Co., Baltimore, pp. 1-462. [No PubMed record available.]
Imhoff JF et al. (1984)
Imhoff, J.F., Truper, H.G., and Pfennig, N. "Rearrangement of the species and genera of the phototrophic 'purple nonsulfur bacteria'." Int. J. Syst. Bacteriol. (1984) 34(3):340-343. [No PubMed record available.]
Lapage SP et al. (1992) (reference with type strain information)
Lapage, S.P., Sneath, P.H.A., Lessel, E.F., Skerman, V.B.D., Seeliger, H.P.R., and Clark, W.A. "International Code of Nomenclature of Bacteria (1990 revision)." American Society for Microbiology, Washington, D.C. (1992). [No PubMed record available.]
Molisch H (1907)
Molisch, H. Die Purpurbakterien nach neueren Untersuchungen. Gustav Fischer Verlag, Jena (1907). pp. 1-95. [No PubMed record available.]
Van Niel CB (1944)
Van Niel, C.B. "The culture, general physiology, morphology and classificaton of the nonsulfur purple and brown bacteria." Bacteriol. Rev. (1944) 8:1-118. [No abstract available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Cereibacter sphaeroides meta-databases BacDive
4 records from this provider organism-specific BioCyc
Rhodobacter sphaeroides (van Niel 1944) Imhoff et al. 1984 taxonomy/phylogenetic Encyclopedia of life
15 records from this provider organism-specific Genomes On Line Database
Rhodobacter sphaeroides culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
15 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Rhodobacter sphaeroides taxonomy/phylogenetic TreeBase
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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