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Conserved domains on  [gi|66395798|ref|YP_240147|]
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RinB-like transcriptional activator [Staphylococcus phage 37]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RinB super family cl05577
Transcriptional activator RinB; This family consists of several Staphylococcus aureus ...
 3-50 1.58e-09

Transcriptional activator RinB; This family consists of several Staphylococcus aureus bacteriophage RinB proteins and related sequences from their host. The int gene of staphylococcal bacteriophage phi 11 is the only viral gene responsible for the integrative recombination of phi 11. rinA and rinB, are both required to activate expression of the int gene.


The actual alignment was detected with superfamily member pfam06116:

Pssm-ID: 283718  Cd Length: 51  Bit Score: 47.67  E-value: 1.58e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 66395798    3 KTIFKIILTLTLYEAAKYITEQYIIYRTQNDDVEAPADF-DINDHIHLN 50
Cdd:pfam06116  1 KEIIKLIFFLAALALGKKATEQLLIMLEANDDVEAPSDFaKLSDHLDLM 49
 
Name Accession Description Interval E-value
RinB pfam06116
Transcriptional activator RinB; This family consists of several Staphylococcus aureus ...
 3-50 1.58e-09

Transcriptional activator RinB; This family consists of several Staphylococcus aureus bacteriophage RinB proteins and related sequences from their host. The int gene of staphylococcal bacteriophage phi 11 is the only viral gene responsible for the integrative recombination of phi 11. rinA and rinB, are both required to activate expression of the int gene.


Pssm-ID: 283718  Cd Length: 51  Bit Score: 47.67  E-value: 1.58e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 66395798    3 KTIFKIILTLTLYEAAKYITEQYIIYRTQNDDVEAPADF-DINDHIHLN 50
Cdd:pfam06116  1 KEIIKLIFFLAALALGKKATEQLLIMLEANDDVEAPSDFaKLSDHLDLM 49
 
Name Accession Description Interval E-value
RinB pfam06116
Transcriptional activator RinB; This family consists of several Staphylococcus aureus ...
 3-50 1.58e-09

Transcriptional activator RinB; This family consists of several Staphylococcus aureus bacteriophage RinB proteins and related sequences from their host. The int gene of staphylococcal bacteriophage phi 11 is the only viral gene responsible for the integrative recombination of phi 11. rinA and rinB, are both required to activate expression of the int gene.


Pssm-ID: 283718  Cd Length: 51  Bit Score: 47.67  E-value: 1.58e-09
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 66395798    3 KTIFKIILTLTLYEAAKYITEQYIIYRTQNDDVEAPADF-DINDHIHLN 50
Cdd:pfam06116  1 KEIIKLIFFLAALALGKKATEQLLIMLEANDDVEAPSDFaKLSDHLDLM 49
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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