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Conserved domains on  [gi|53686585|ref|YP_097088|]
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cytochrome b (mitochondrion) [Rhyacotriton variegatus]

Protein Classification

cytochrome b( domain architecture ID 11475890)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00074
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 699.51  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585    1 MTHTTRKTHPLLKIINNSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLM 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   81 RNTHANGASLFFVCIYLHIGRGLYYGSYLYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDT 160
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  161 LVQWVWGGFSVDKATLSRFFTFHFILPFIIIGTSIVHLLFLHETGSNNPTGIMSNHDKISFHPYFLYKDLLGFMYMLLLL 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  241 MFLSLLLPNLLGDPENFTPANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHTSKQRSLMFRP 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  321 ITQVLFWTFTASILILTWIGGQPVEPPFIEIGQISSAMYFLLFLLLIPMMSLTENKLMKW 380
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
 
Name Accession Description Interval E-value
CYTB MTH00074
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 699.51  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585    1 MTHTTRKTHPLLKIINNSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLM 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   81 RNTHANGASLFFVCIYLHIGRGLYYGSYLYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDT 160
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  161 LVQWVWGGFSVDKATLSRFFTFHFILPFIIIGTSIVHLLFLHETGSNNPTGIMSNHDKISFHPYFLYKDLLGFMYMLLLL 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  241 MFLSLLLPNLLGDPENFTPANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHTSKQRSLMFRP 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  321 ITQVLFWTFTASILILTWIGGQPVEPPFIEIGQISSAMYFLLFLLLIPMMSLTENKLMKW 380
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-374 1.85e-123

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 361.80  E-value: 1.85e-123
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  12 LKIINNSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLMRNTHANGASLF 91
Cdd:COG1290  20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  92 FVCIYLHIGRGLYYGSylYKE----TWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDTLVQWVWG 167
Cdd:COG1290 100 FAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585 168 GFSVDKATLSRFFTFH-FILPFIIIGTSIVHLLFLHETGSNNPTGI----MSNHDKISFHPYFLYKDllGFMYMLLLLMF 242
Cdd:COG1290 178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKD--GFGFFVFLGVF 255

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585 243 LSLLLPNLLGDPENFTPANPLTTPPHIQPEWYFLFAYAILRSIP--NKLGGVIALIMSILMLIITPMLHTSKQRSLMFRP 320
Cdd:COG1290 256 ALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|....
gi 53686585 321 ITQVLFWTFTASILILTWIGGQPvePPFIEIGQISSAMYFLLFLLLIPMMSLTE 374
Cdd:COG1290 336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 6.67e-92

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 274.25  E-value: 6.67e-92
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  10 PLLKIINNSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLMRNTHANGAS 89
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  90 LFFVCIYLHIGRGLYYGSY--LYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDTLVQWVWG 167
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 53686585 168 GFSVDKATLSRFFTFHFILPFIIIGTSIVHLLFLHETGSN 207
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 1.02e-83

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 253.07  E-value: 1.02e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585    19 FIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLMRNTHANGASLFFVCIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585    99 IGRGLYYG--SYLYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDTLVQWVWGGFSVDKATL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 53686585   177 SRFFTFHFILPFIIIGTSIVHLLFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-340 1.18e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 56.73  E-value: 1.18e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   259 PANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHT-SKQRSLMFRPITQVLFWTFTASILilt 337
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVATTVFLFGTVVAL--- 141


                  ...
gi 53686585   338 WIG 340
Cdd:TIGR01156 142 WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00074
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 699.51  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585    1 MTHTTRKTHPLLKIINNSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLM 80
Cdd:MTH00074   1 MAHPIRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLM 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   81 RNTHANGASLFFVCIYLHIGRGLYYGSYLYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDT 160
Cdd:MTH00074  81 RNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  161 LVQWVWGGFSVDKATLSRFFTFHFILPFIIIGTSIVHLLFLHETGSNNPTGIMSNHDKISFHPYFLYKDLLGFMYMLLLL 240
Cdd:MTH00074 161 LVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTAL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  241 MFLSLLLPNLLGDPENFTPANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHTSKQRSLMFRP 320
Cdd:MTH00074 241 ALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRP 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  321 ITQVLFWTFTASILILTWIGGQPVEPPFIEIGQISSAMYFLLFLLLIPMMSLTENKLMKW 380
Cdd:MTH00074 321 LTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00119
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 679.32  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585    1 MTHTTRKTHPLLKIINNSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLM 80
Cdd:MTH00119   1 MAPNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLI 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   81 RNTHANGASLFFVCIYLHIGRGLYYGSYLYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDT 160
Cdd:MTH00119  81 RNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  161 LVQWVWGGFSVDKATLSRFFTFHFILPFIIIGTSIVHLLFLHETGSNNPTGIMSNHDKISFHPYFLYKDLLGFMYMLLLL 240
Cdd:MTH00119 161 LVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  241 MFLSLLLPNLLGDPENFTPANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHTSKQRSLMFRP 320
Cdd:MTH00119 241 LTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRP 320

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  321 ITQVLFWTFTASILILTWIGGQPVEPPFIEIGQISSAMYFLLFLLLIPMMSLTENKLMKW 380
Cdd:MTH00119 321 LSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 6-380 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 660.19  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585    6 RKTHPLLKIINNSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLMRNTHA 85
Cdd:MTH00131   5 RKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   86 NGASLFFVCIYLHIGRGLYYGSYLYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDTLVQWV 165
Cdd:MTH00131  85 NGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  166 WGGFSVDKATLSRFFTFHFILPFIIIGTSIVHLLFLHETGSNNPTGIMSNHDKISFHPYFLYKDLLGFMYMLLLLMFLSL 245
Cdd:MTH00131 165 WGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLAL 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  246 LLPNLLGDPENFTPANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHTSKQRSLMFRPITQVL 325
Cdd:MTH00131 245 FSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFL 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 53686585  326 FWTFTASILILTWIGGQPVEPPFIEIGQISSAMYFLLFLLLIPMMSLTENKLMKW 380
Cdd:MTH00131 325 FWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00100
cytochrome b; Provisional
 1-380 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 656.33  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585    1 MTHTtRKTHPLLKIINNSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLM 80
Cdd:MTH00100   1 MTNI-RKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWII 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   81 RNTHANGASLFFVCIYLHIGRGLYYGSYLYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDT 160
Cdd:MTH00100  80 RYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTT 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  161 LVQWVWGGFSVDKATLSRFFTFHFILPFIIIGTSIVHLLFLHETGSNNPTGIMSNHDKISFHPYFLYKDLLGFMYMLLLL 240
Cdd:MTH00100 160 LVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTL 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  241 MFLSLLLPNLLGDPENFTPANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHTSKQRSLMFRP 320
Cdd:MTH00100 240 MLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRP 319

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  321 ITQVLFWTFTASILILTWIGGQPVEPPFIEIGQISSAMYFLLFLLLIPMMSLTENKLMKW 380
Cdd:MTH00100 320 LSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00191
cytochrome b; Provisional
 6-369 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 623.86  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585    6 RKTHPLLKIINNSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLMRNTHA 85
Cdd:MTH00191   2 RKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   86 NGASLFFVCIYLHIGRGLYYGSYLYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDTLVQWV 165
Cdd:MTH00191  82 NGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  166 WGGFSVDKATLSRFFTFHFILPFIIIGTSIVHLLFLHETGSNNPTGIMSNHDKISFHPYFLYKDLLGFMYMLLLLMFLSL 245
Cdd:MTH00191 162 WGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  246 LLPNLLGDPENFTPANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHTSKQRSLMFRPITQVL 325
Cdd:MTH00191 242 FSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVV 321

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....
gi 53686585  326 FWTFTASILILTWIGGQPVEPPFIEIGQISSAMYFLLFLLLIPM 369
Cdd:MTH00191 322 FWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 12-366 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 604.08  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   12 LKIINNSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLMRNTHANGASLF 91
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   92 FVCIYLHIGRGLYYGSYLYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDTLVQWVWGGFSV 171
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  172 DKATLSRFFTFHFILPFIIIGTSIVHLLFLHETGSNNPTGIMSNHDKISFHPYFLYKDLLGFMYMLLLLMFLSLLLPNLL 251
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  252 GDPENFTPANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHTSKQRSLMFRPITQVLFWTFTA 331
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 53686585  332 SILILTWIGGQPVEPPFIEIGQISSAMYFLLFLLL 366
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00034
cytochrome b; Validated
 6-377 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 591.68  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585    6 RKTHPLLKIINNSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLMRNTHA 85
Cdd:MTH00034   5 RKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   86 NGASLFFVCIYLHIGRGLYYGSYLYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDTLVQWV 165
Cdd:MTH00034  85 NGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWI 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  166 WGGFSVDKATLSRFFTFHFILPFIIIGTSIVHLLFLHETGSNNPTGIMSNHDKISFHPYFLYKDLLGFMYMLLLLMFLSL 245
Cdd:MTH00034 165 WGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLAL 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  246 LLPNLLGDPENFTPANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHTSKQRSLMFRPITQVL 325
Cdd:MTH00034 245 LFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIA 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|..
gi 53686585  326 FWTFTASILILTWIGGQPVEPPFIEIGQISSAMYFLLFLLLIPMMSLTENKL 377
Cdd:MTH00034 325 FWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKL 376
CYTB MTH00145
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 586.10  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585    1 MTHTTRKTHPLLKIINNSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLM 80
Cdd:MTH00145   1 MLSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   81 RNTHANGASLFFVCIYLHIGRGLYYGSYLYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDT 160
Cdd:MTH00145  81 RSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  161 LVQWVWGGFSVDKATLSRFFTFHFILPFIIIGTSIVHLLFLHETGSNNPTGIMSNHDKISFHPYFLYKDLLGFMYMLLLL 240
Cdd:MTH00145 161 LVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  241 MFLSLLLPNLLGDPENFTPANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHTSKQRSLMFRP 320
Cdd:MTH00145 241 VFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 53686585  321 ITQVLFWTFTASILILTWIGGQPVEPPFIEIGQISSAMYFLLFlLLIPMMSLTENKLM 378
Cdd:MTH00145 321 LNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFF-LILPLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-378 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 547.35  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585    1 MTHTTRKTHPLLKIINNSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLM 80
Cdd:MTH00016   1 MFSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   81 RNTHANGASLFFVCIYLHIGRGLYYGSYLYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDT 160
Cdd:MTH00016  81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  161 LVQWVWGGFSVDKATLSRFFTFHFILPFIIIGTSIVHLLFLHETGSNNPTGIMSNHDKISFHPYFLYKDLLGFMYMLLLL 240
Cdd:MTH00016 161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  241 MFLSLLLPNLLGDPENFTPANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHTSKQRSLMFRP 320
Cdd:MTH00016 241 LSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 53686585  321 ITQVLFWTFTASILILTWIGGQPVEPPFIEIGQISSAMYFLLFLLLIPMMSLTENKLM 378
Cdd:MTH00016 321 LNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLLK 378
CYTB MTH00053
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 512.33  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585    1 MTHTTRKTHPLLKIINNSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLM 80
Cdd:MTH00053   1 MTKTIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFIL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   81 RNTHANGASLFFVCIYLHIGRGLYYGSYLYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDT 160
Cdd:MTH00053  81 RYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  161 LVQWVWGGFSVDKATLSRFFTFHFILPFIIIGTSIVHLLFLHETGSNNPTGIMSNHDKISFHPYFLYKDLLGFMYMLLLL 240
Cdd:MTH00053 161 IVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  241 MFLSLLLPNLLGDPENFTPANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHTSKQRSLMFRP 320
Cdd:MTH00053 241 SIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 53686585  321 ITQVLFWTFTASILILTWIGGQPVEPPFIEIGQISSAMYFLLFLLLIPMMSLTENKLMK 379
Cdd:MTH00053 321 LSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
 6-379 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 506.93  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585    6 RKTHPLLKIINNSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLMRNTHA 85
Cdd:MTH00022   4 RKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHA 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   86 NGASLFFVCIYLHIGRGLYYGSYLYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDTLVQWV 165
Cdd:MTH00022  84 NGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQWV 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  166 WGGFSVDKATLSRFFTFHFILPFIIIGTSIVHLLFLHETGSNNPTGIMSNHDKISFHPYFLYKDLLGFMYMLLLLMFLSL 245
Cdd:MTH00022 164 WGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVY 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  246 LLPNLLGDPENFTPANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHTSKQRSLMFRPITQVL 325
Cdd:MTH00022 244 FAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMA 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 53686585  326 FWTFTASILILTWIGGQPVEPPFIEIGQISSAMYFLLFLLLIPMMSLTENKLMK 379
Cdd:MTH00022 324 FWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-379 5.21e-171

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 482.11  E-value: 5.21e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585    1 MTHTTRKTHPLLKIINNSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLM 80
Cdd:MTH00224   1 MFKPFRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   81 RNTHANGASLFFVCIYLHIGRGLYYGSYLYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDT 160
Cdd:MTH00224  81 RSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKD 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  161 LVQWVWGGFSVDKATLSRFFTFHFILPFIIIGTSIVHLLFLHETGSNNPTGIMSNHDKISFHPYFLYKDLLGFMYMLLLL 240
Cdd:MTH00224 161 LVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  241 MFLSLLLPNLLGDPENFTPANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHTSKQRSLMFRP 320
Cdd:MTH00224 241 SLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYP 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 53686585  321 ITQVLFWTFTASILILTWIGGQPVEPPFIEIGQISSAMYFLLFlLLIPMMSLTENKLMK 379
Cdd:MTH00224 321 LNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYF-IISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 17-375 2.88e-131

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 381.21  E-value: 2.88e-131
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   17 NSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLMRNTHANGASLFFVCIY 96
Cdd:MTH00033  13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   97 LHIGRGLYYGSYLYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDTLVQWVWGGFSVDKATL 176
Cdd:MTH00033  93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  177 SRFFTFHFILPFIIIGTSIVHLLFLHETGSNNPTGIMSNHDKISFHPYFLYKDLLGFMYMLLLLMFLSL--LLPNLLGDP 254
Cdd:MTH00033 173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIepRIETLLQDP 252

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  255 ENFTPANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHTSKQRSLMFRPITQVLFWTFTASIL 334
Cdd:MTH00033 253 ENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFI 332

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|..
gi 53686585  335 ILTWIGGQPV-EPPFIEIGQISSAMYFLLFLLLIPMMSLTEN 375
Cdd:MTH00033 333 ILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-374 1.85e-123

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 361.80  E-value: 1.85e-123
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  12 LKIINNSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLMRNTHANGASLF 91
Cdd:COG1290  20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  92 FVCIYLHIGRGLYYGSylYKE----TWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDTLVQWVWG 167
Cdd:COG1290 100 FAAVYLHMFRGFFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                       170       180       190       200       210       220       230       240
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585 168 GFSVDKATLSRFFTFH-FILPFIIIGTSIVHLLFLHETGSNNPTGI----MSNHDKISFHPYFLYKDllGFMYMLLLLMF 242
Cdd:COG1290 178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKD--GFGFFVFLGVF 255

                       250       260       270       280       290       300       310       320
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585 243 LSLLLPNLLGDPENFTPANPLTTPPHIQPEWYFLFAYAILRSIP--NKLGGVIALIMSILMLIITPMLHTSKQRSLMFRP 320
Cdd:COG1290 256 ALLAFFFPINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRP 335

                       330       340       350       360       370
                ....*....|....*....|....*....|....*....|....*....|....
gi 53686585 321 ITQVLFWTFTASILILTWIGGQPvePPFIEIGQISSAMYFLLFLLLIPMMSLTE 374
Cdd:COG1290 336 VRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 13-366 4.03e-121

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 354.25  E-value: 4.03e-121
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   13 KIINNSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLMRNTHANGASLFF 92
Cdd:MTH00086   1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   93 VCIYLHIGRGLYYGSYLYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDTLVQWVWGGFSVD 172
Cdd:MTH00086  81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  173 KATLSRFFTFHFILPFIIIGTSIVHLLFLHETGSNNPTGIMSNHDKISFHPYFLYKDlLGFMYMLLLLMFLSLLLPNLLG 252
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKD-AYNIIFWLVFIIFSLFYPFNLG 239

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  253 DPENFTPANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHTSKQrslMFRPITQVLFWTFTAS 332
Cdd:MTH00086 240 DPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVV 316

                        330       340       350
                 ....*....|....*....|....*....|....
gi 53686585  333 ILILTWIGGQPVEPPFIEIGQISSAMYFLLFLLL 366
Cdd:MTH00086 317 NVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLM 350
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 10-207 6.67e-92

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 274.25  E-value: 6.67e-92
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  10 PLLKIINNSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLMRNTHANGAS 89
Cdd:cd00284   1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  90 LFFVCIYLHIGRGLYYGSY--LYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDTLVQWVWG 167
Cdd:cd00284  81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                       170       180       190       200
                ....*....|....*....|....*....|....*....|
gi 53686585 168 GFSVDKATLSRFFTFHFILPFIIIGTSIVHLLFLHETGSN 207
Cdd:cd00284 161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
CYTB MTH00046
cytochrome b; Validated
 11-367 1.40e-89

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 273.78  E-value: 1.40e-89
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   11 LLKIINNSFIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLMRNTHANGASL 90
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   91 FFVCIYLHIGRGLYYGSYLYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDTLVQWVWGGFS 170
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  171 VDKATLSRFFTFHFILPFIIIGTSIVHLLFLHETGSNNPTGIMSNH-DKISFHPYFLYKDLLGFMYMLLLLMFLSLLLPN 249
Cdd:MTH00046 161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  250 LLGDPENFTPANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIaLIMSILMLIITPMLHTSKQRSLmfrpITQVLFWTF 329
Cdd:MTH00046 241 LVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV----WRQVNFWLI 315

                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 53686585  330 TASILILTWIGGQPVEPPFIEIGQISSAMyfLLFLLLI 367
Cdd:MTH00046 316 VSLFFSLSYLGGCHPEYPYLLISQLFSVL--MVLLLFI 351
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
19-205 1.02e-83

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 253.07  E-value: 1.02e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585    19 FIDLPTPVNLSYLWNFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLMRNTHANGASLFFVCIYLH 98
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585    99 IGRGLYYG--SYLYKETWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDTLVQWVWGGFSVDKATL 176
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 53686585   177 SRFFTFHFILPFIIIGTSIVHLLFLHETG 205
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-359 3.70e-45

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 150.71  E-value: 3.70e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   259 PANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHTSKQRSLMFRPITQVLFWTFTASILILTW 338
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 53686585   339 IGGQPVEPPFIEIGQISSAMY 359
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-354 7.22e-44

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 148.95  E-value: 7.22e-44
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585 208 NPTGIMSNHDKISFHPYFLYKDLLGFMYMLLLLMFLSLLLPNLLGDPENFTPANPLTTPPHIQPEWYFLFAYAILRSIPN 287
Cdd:cd00290   1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                        90       100       110       120       130       140
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 53686585 288 KLGGVIALIMSILMLIITPMLHTSKQRSlMFRPITQVLFWTFTASILILTWIGGQPVEPPFIEIGQI 354
Cdd:cd00290  81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
89-229 2.16e-40

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 140.45  E-value: 2.16e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585    89 SLFFVCIYLHIGRGLYYGSYLYKE--TWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDTLVQWVW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 53686585   167 GGFSVDKATLSRFFTFHF-ILPFIIIGTSIVHLLFLHETGSNNPTGIMSNHDKISFHPYFLYKD 229
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKM 144
PRK03735 PRK03735
cytochrome b6; Provisional
 34-209 1.31e-36

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 132.53  E-value: 1.31e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   34 FGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLMRNTHANGASLFFVCIYLHIGRGLYYGSYLYKE- 112
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  113 -TWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDTLVQWVWGGFSVDKATLSRFFTFH-FILPFII 190
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                        170
                 ....*....|....*....
gi 53686585  191 IGTSIVHLLFLHETGSNNP 209
Cdd:PRK03735 204 AVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 22-209 3.00e-32

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 120.60  E-value: 3.00e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   22 LPTPVNLSYLwnFGSILGICLITQVLTGLFLAMHYSADTTLAFSSVAHICRDVNYGWLMRNTHANGASLFFVCIYLHIGR 101
Cdd:CHL00070  26 VPPHVNIFYC--LGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR 103

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585  102 GLYYGSYLYKE--TWNTGIVLLFLTMATAFVGYVLPWGQMSFWGATVITNLLSAIPYFGDTLVQWVWGGFSVDKATLSRF 179
Cdd:CHL00070 104 VYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRF 183

                        170       180       190
                 ....*....|....*....|....*....|.
gi 53686585  180 FTFH-FILPFIIIGTSIVHLLFLHETGSNNP 209
Cdd:CHL00070 184 YSLHtFVLPLLTAVFMLMHFLMIRKQGISGP 214
petD CHL00058
cytochrome b6/f complex subunit IV
 259-331 6.38e-10

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 57.32  E-value: 6.38e-10
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 53686585  259 PANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHTSKQRSLMF-RPI--TQVLFWTFTA 331
Cdd:CHL00058  65 PADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFrRPVatTVFLIGTAVA 140
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-340 1.18e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 56.73  E-value: 1.18e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585   259 PANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHT-SKQRSLMFRPITQVLFWTFTASILilt 337
Cdd:TIGR01156  65 PANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVATTVFLFGTVVAL--- 141


                  ...
gi 53686585   338 WIG 340
Cdd:TIGR01156 142 WLG 144
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 259-340 2.43e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 55.96  E-value: 2.43e-09
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53686585 259 PANPLTTPPHIQPEWYFLFAYAILRSIPNKLGGVIALIMSILMLIITPMLHT-SKQRSLMFRPITQVLfwtFTASILILT 337
Cdd:COG5679  66 PADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPFRRPVATAV---FLFGTLVTL 142


                ...
gi 53686585 338 WIG 340
Cdd:COG5679 143 WLG 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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