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Conserved domains on  [gi|2192921021|ref|YP_010258289|]
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NADH-plastoquinone oxidoreductase subunit 4L (chloroplast) [Camelina neglecta]

Protein Classification

NAD(P)H-quinone oxidoreductase subunit 4L( domain architecture ID 10000006)

NAD(P)H-quinone oxidoreductase subunit 4L (ND4L) is part of the chloroplast NDH complex that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic and in the chloroplast respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ndhE CHL00015
NADH dehydrogenase subunit 4L
 1-101 9.39e-48

NADH dehydrogenase subunit 4L


:

Pssm-ID: 176958  Cd Length: 101  Bit Score: 147.46  E-value: 9.39e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921021   1 MILEHVLVLSAYLFLIGLYGLITSRNMVRALMCLELILNAVNMNFVTFSDFFDNSQLKGDIFCIFVIAIAAAEAAIGLAI 80
Cdd:CHL00015    1 MMLEHVLILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAI 80

                          90       100
                  ....*....|....*....|.
gi 2192921021  81 VSSIYRNRKSTRINQSTLLNK 101
Cdd:CHL00015   81 VSSIYRNRKSTRINQSNLLKK 101
 
Name Accession Description Interval E-value
ndhE CHL00015
NADH dehydrogenase subunit 4L
 1-101 9.39e-48

NADH dehydrogenase subunit 4L


Pssm-ID: 176958  Cd Length: 101  Bit Score: 147.46  E-value: 9.39e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921021   1 MILEHVLVLSAYLFLIGLYGLITSRNMVRALMCLELILNAVNMNFVTFSDFFDNSQLKGDIFCIFVIAIAAAEAAIGLAI 80
Cdd:CHL00015    1 MMLEHVLILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAI 80

                          90       100
                  ....*....|....*....|.
gi 2192921021  81 VSSIYRNRKSTRINQSTLLNK 101
Cdd:CHL00015   81 VSSIYRNRKSTRINQSNLLKK 101
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-99 1.60e-19

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 75.87  E-value: 1.60e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921021   1 MILEHVLVLSAYLFLIGLYGLITSRNMVRALMCLELILNAVNMNFVTFSDFFDNsqLKGDIFCIFVIAIAAAEAAIGLAI 80
Cdd:COG0713     1 IPLEHYLILAAILFAIGLYGVLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLGD--LDGQVFALFVIAVAAAEVAVGLAI 78

                          90
                  ....*....|....*....
gi 2192921021  81 VSSIYRNRKSTRINQSTLL 99
Cdd:COG0713    79 IVALYRNRGTIDVDDLNEL 97
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
5-99 1.25e-14

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 63.35  E-value: 1.25e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921021   5 HVLVLSAYLFLIGLYGLITSRNMVRALMCLELILNAVNMNFVTFSDFFDNsqLKGDIFCIFVIAIAAAEAAIGLAIVSSI 84
Cdd:pfam00420   1 AYLLLSGLLFLIGLYGLLLRRNLLRVLLSLELMLNAVNLALVLFGRLTAD--PLPQALILTAIVIAAAEAAVGLALLVRI 78

                          90
                  ....*....|....*
gi 2192921021  85 YRNRKSTRINQSTLL 99
Cdd:pfam00420  79 YRTHGTDDVDSLNLL 93
 
Name Accession Description Interval E-value
ndhE CHL00015
NADH dehydrogenase subunit 4L
 1-101 9.39e-48

NADH dehydrogenase subunit 4L


Pssm-ID: 176958  Cd Length: 101  Bit Score: 147.46  E-value: 9.39e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921021   1 MILEHVLVLSAYLFLIGLYGLITSRNMVRALMCLELILNAVNMNFVTFSDFFDNSQLKGDIFCIFVIAIAAAEAAIGLAI 80
Cdd:CHL00015    1 MMLEHVLILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAI 80

                          90       100
                  ....*....|....*....|.
gi 2192921021  81 VSSIYRNRKSTRINQSTLLNK 101
Cdd:CHL00015   81 VSSIYRNRKSTRINQSNLLKK 101
PRK05715 PRK05715
NADH-quinone oxidoreductase subunit NuoK;
1-99 5.06e-20

NADH-quinone oxidoreductase subunit NuoK;


Pssm-ID: 180218  Cd Length: 100  Bit Score: 77.14  E-value: 5.06e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921021   1 MILEHVLVLSAYLFLIGLYGLITSRNMVRALMCLELILNAVNMNFVTFSDFFdnSQLKGDIFCIFVIAIAAAEAAIGLAI 80
Cdd:PRK05715    2 IPLQHYLILAAILFCIGLVGLLLRRNAIVVLMSIELMLNAVNLNFVAFSSYL--GDLDGQVFAFFVITVAAAEAAIGLAI 79

                          90
                  ....*....|....*....
gi 2192921021  81 VSSIYRNRKSTRINQSTLL 99
Cdd:PRK05715   80 LLQLYRNRGTIDVDDLNEL 98
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-99 1.60e-19

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 75.87  E-value: 1.60e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921021   1 MILEHVLVLSAYLFLIGLYGLITSRNMVRALMCLELILNAVNMNFVTFSDFFDNsqLKGDIFCIFVIAIAAAEAAIGLAI 80
Cdd:COG0713     1 IPLEHYLILAAILFAIGLYGVLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLGD--LDGQVFALFVIAVAAAEVAVGLAI 78

                          90
                  ....*....|....*....
gi 2192921021  81 VSSIYRNRKSTRINQSTLL 99
Cdd:COG0713    79 IVALYRNRGTIDVDDLNEL 97
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
5-99 1.25e-14

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 63.35  E-value: 1.25e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2192921021   5 HVLVLSAYLFLIGLYGLITSRNMVRALMCLELILNAVNMNFVTFSDFFDNsqLKGDIFCIFVIAIAAAEAAIGLAIVSSI 84
Cdd:pfam00420   1 AYLLLSGLLFLIGLYGLLLRRNLLRVLLSLELMLNAVNLALVLFGRLTAD--PLPQALILTAIVIAAAEAAVGLALLVRI 78

                          90
                  ....*....|....*
gi 2192921021  85 YRNRKSTRINQSTLL 99
Cdd:pfam00420  79 YRTHGTDDVDSLNLL 93
PRK07375 PRK07375
Na+/H+ antiporter subunit C;
7-47 2.17e-04

Na+/H+ antiporter subunit C;


Pssm-ID: 236004  Cd Length: 112  Bit Score: 37.17  E-value: 2.17e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2192921021   7 LVLSAYLFLIGLYGLITSRNMVRALMCLELILNAVNMNFVT 47
Cdd:PRK07375    6 YALAIALLVIGLYGLIFKRNLLKKIIGLDVFQTGVNLFYIA 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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