NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2026153934|ref|YP_010042651|]
View 

NADH-plastoquinone oxidoreductase subunit 4L (chloroplast) [Convolvulus arvensis]

Protein Classification

NAD(P)H-quinone oxidoreductase subunit 4L( domain architecture ID 10000006)

NAD(P)H-quinone oxidoreductase subunit 4L (ND4L) is part of the chloroplast NDH complex that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic and in the chloroplast respiratory chain

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ndhE CHL00015
NADH dehydrogenase subunit 4L
 1-101 6.92e-45

NADH dehydrogenase subunit 4L


:

Pssm-ID: 176958  Cd Length: 101  Bit Score: 140.14  E-value: 6.92e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2026153934   1 MMLEHALVLSAFLFSIGIYGLITSRNMVRALMCLELILNAVNMNLVTFSYFFDNRQLKGDIFSIFIIAIAAAEAAIGLAI 80
Cdd:CHL00015    1 MMLEHVLILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAI 80

                          90       100
                  ....*....|....*....|.
gi 2026153934  81 VSSIYRNRKSTRIDQSNLLNN 101
Cdd:CHL00015   81 VSSIYRNRKSTRINQSNLLKK 101
 
Name Accession Description Interval E-value
ndhE CHL00015
NADH dehydrogenase subunit 4L
 1-101 6.92e-45

NADH dehydrogenase subunit 4L


Pssm-ID: 176958  Cd Length: 101  Bit Score: 140.14  E-value: 6.92e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2026153934   1 MMLEHALVLSAFLFSIGIYGLITSRNMVRALMCLELILNAVNMNLVTFSYFFDNRQLKGDIFSIFIIAIAAAEAAIGLAI 80
Cdd:CHL00015    1 MMLEHVLILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAI 80

                          90       100
                  ....*....|....*....|.
gi 2026153934  81 VSSIYRNRKSTRIDQSNLLNN 101
Cdd:CHL00015   81 VSSIYRNRKSTRINQSNLLKK 101
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-54 1.17e-19

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 76.26  E-value: 1.17e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2026153934   1 MMLEHALVLSAFLFSIGIYGLITSRNMVRALMCLELILNAVNMNLVTFSYFFDN 54
Cdd:COG0713     1 IPLEHYLILAAILFAIGLYGVLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLGD 54
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
5-54 4.95e-13

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 59.11  E-value: 4.95e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2026153934   5 HALVLSAFLFSIGIYGLITSRNMVRALMCLELILNAVNMNLVTFSYFFDN 54
Cdd:pfam00420   1 AYLLLSGLLFLIGLYGLLLRRNLLRVLLSLELMLNAVNLALVLFGRLTAD 50
 
Name Accession Description Interval E-value
ndhE CHL00015
NADH dehydrogenase subunit 4L
 1-101 6.92e-45

NADH dehydrogenase subunit 4L


Pssm-ID: 176958  Cd Length: 101  Bit Score: 140.14  E-value: 6.92e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2026153934   1 MMLEHALVLSAFLFSIGIYGLITSRNMVRALMCLELILNAVNMNLVTFSYFFDNRQLKGDIFSIFIIAIAAAEAAIGLAI 80
Cdd:CHL00015    1 MMLEHVLILSAYLFSIGIYGLITSRNMVRALMCLELILNAVNINFVTFSDFFDSRQLKGDIFSIFVIAIAAAEAAIGLAI 80

                          90       100
                  ....*....|....*....|.
gi 2026153934  81 VSSIYRNRKSTRIDQSNLLNN 101
Cdd:CHL00015   81 VSSIYRNRKSTRINQSNLLKK 101
NuoK COG0713
NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; ...
 1-54 1.17e-19

NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440477  Cd Length: 99  Bit Score: 76.26  E-value: 1.17e-19
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2026153934   1 MMLEHALVLSAFLFSIGIYGLITSRNMVRALMCLELILNAVNMNLVTFSYFFDN 54
Cdd:COG0713     1 IPLEHYLILAAILFAIGLYGVLTRRNLIVVLMSIELMLNAVNLNLVAFSRYLGD 54
PRK05715 PRK05715
NADH-quinone oxidoreductase subunit NuoK;
1-99 3.70e-18

NADH-quinone oxidoreductase subunit NuoK;


Pssm-ID: 180218  Cd Length: 100  Bit Score: 72.52  E-value: 3.70e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2026153934   1 MMLEHALVLSAFLFSIGIYGLITSRNMVRALMCLELILNAVNMNLVTFSYFFDnrQLKGDIFSIFIIAIAAAEAAIGLAI 80
Cdd:PRK05715    2 IPLQHYLILAAILFCIGLVGLLLRRNAIVVLMSIELMLNAVNLNFVAFSSYLG--DLDGQVFAFFVITVAAAEAAIGLAI 79

                          90
                  ....*....|....*....
gi 2026153934  81 VSSIYRNRKSTRIDQSNLL 99
Cdd:PRK05715   80 LLQLYRNRGTIDVDDLNEL 98
Oxidored_q2 pfam00420
NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;
5-54 4.95e-13

NADH-ubiquinone/plastoquinone oxidoreductase chain 4L;


Pssm-ID: 425672  Cd Length: 95  Bit Score: 59.11  E-value: 4.95e-13
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2026153934   5 HALVLSAFLFSIGIYGLITSRNMVRALMCLELILNAVNMNLVTFSYFFDN 54
Cdd:pfam00420   1 AYLLLSGLLFLIGLYGLLLRRNLLRVLLSLELMLNAVNLALVLFGRLTAD 50
PRK07375 PRK07375
Na+/H+ antiporter subunit C;
6-50 7.36e-05

Na+/H+ antiporter subunit C;


Pssm-ID: 236004  Cd Length: 112  Bit Score: 38.33  E-value: 7.36e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2026153934   6 ALVLSAFLFSIGIYGLITSRNMVRALMCLELILNAVNMNLVTFSY 50
Cdd:PRK07375    5 IYALAIALLVIGLYGLIFKRNLLKKIIGLDVFQTGVNLFYIAIGY 49
PRK12658 PRK12658
Na+/H+ antiporter subunit C;
8-47 2.52e-03

Na+/H+ antiporter subunit C;


Pssm-ID: 183658  Cd Length: 125  Bit Score: 34.65  E-value: 2.52e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 2026153934   8 VLSAFLFSIGIYgLITSRNMVRALMCLELILNAVNMNLVT 47
Cdd:PRK12658    7 ILVGVFFAAAIY-LMLSRHIIRILFGLALLGNAVNLLIFT 45
PRK07946 PRK07946
putative monovalent cation/H+ antiporter subunit C; Reviewed
 7-47 8.49e-03

putative monovalent cation/H+ antiporter subunit C; Reviewed


Pssm-ID: 236136  Cd Length: 163  Bit Score: 33.48  E-value: 8.49e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2026153934   7 LVLSAFLFSIGIYgLITSRNMVRALMCLELILNAVNMNLVT 47
Cdd:PRK07946    8 LVAIGVLTSAGVY-LLLERSLTRMLLGLLLIGNGVNLLILT 47
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH