NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1877793044|ref|YP_009900707|]
View 

tail completion or Neck1 protein [Lactococcus phage 50902]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
HK97-gp10_like super family cl12124
Bacteriophage HK97-gp10, putative tail-component; This family of proteins is found in the ...
 3-139 4.25e-10

Bacteriophage HK97-gp10, putative tail-component; This family of proteins is found in the caudovirales. It may be a tail component.


The actual alignment was detected with superfamily member TIGR01725:

Pssm-ID: 448411  Cd Length: 119  Bit Score: 53.58  E-value: 4.25e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1877793044   3 KNDFEIETNVDGVTKVIMQAAER-ALEAASIHMVGEVKDRAPVESGE----LRRSISRTIDNSGGKLVAKVGSNLQYAVY 77
Cdd:TIGR01725   2 TGLDELLQKLEKLGKKVDKEKVRkALKAGANVIRAKLKSNAPVSKGKkhgsLRDSIVKQKDNGVLSVTVGPGKTAWYARF 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1877793044  78 QEFGtgefaengagrkggwvyegpdgkvhfTRGSKPKKFLRDAFRANKKNIKSIINAEMRNL 139
Cdd:TIGR01725  82 LEFG--------------------------TRYMPAQPFMRPAFKQNKPKVIKIMIEELEAL 117
 
Name Accession Description Interval E-value
phge_HK97_gp10 TIGR01725
phage protein, HK97 gp10 family; This model represents an uncharacterized, highly divergent ...
 3-139 4.25e-10

phage protein, HK97 gp10 family; This model represents an uncharacterized, highly divergent bacteriophage family. The family includes gp10 from HK022 and HK97. It appears related to TIGR01635, a phage morphogenesis family believed to be involved in tail completion. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273775  Cd Length: 119  Bit Score: 53.58  E-value: 4.25e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1877793044   3 KNDFEIETNVDGVTKVIMQAAER-ALEAASIHMVGEVKDRAPVESGE----LRRSISRTIDNSGGKLVAKVGSNLQYAVY 77
Cdd:TIGR01725   2 TGLDELLQKLEKLGKKVDKEKVRkALKAGANVIRAKLKSNAPVSKGKkhgsLRDSIVKQKDNGVLSVTVGPGKTAWYARF 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1877793044  78 QEFGtgefaengagrkggwvyegpdgkvhfTRGSKPKKFLRDAFRANKKNIKSIINAEMRNL 139
Cdd:TIGR01725  82 LEFG--------------------------TRYMPAQPFMRPAFKQNKPKVIKIMIEELEAL 117
HK97-gp10_like pfam04883
Bacteriophage HK97-gp10, putative tail-component; This family of proteins is found in the ...
 7-81 1.92e-08

Bacteriophage HK97-gp10, putative tail-component; This family of proteins is found in the caudovirales. It may be a tail component.


Pssm-ID: 428172  Cd Length: 80  Bit Score: 48.10  E-value: 1.92e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1877793044   7 EIETNVDGVTKVIMQAAERALEAASIHMVGEVKDRAPVES-GELRRSISRT---IDNSGGKLVAKVGSNLQYAVYQEFG 81
Cdd:pfam04883   2 KLIKKLEKLSKVAEKAAKKALKAAAAEVADEAKKNAPVDTtGKLRDSIKVGvnlVKEKGGELVVEVGSNAEYAHLVEFG 80
gpG COG5005
Mu-like prophage protein gpG [Mobilome: prophages, transposons];
44-82 8.18e-04

Mu-like prophage protein gpG [Mobilome: prophages, transposons];


Pssm-ID: 444029  Cd Length: 146  Bit Score: 37.21  E-value: 8.18e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1877793044  44 VESGELRRSISRTIDNSGgklvAKVGSNLQYAVYQEFGT 82
Cdd:COG5005    74 QDTGDLRDSITYQAGDDS----VEVGSNLIYAAIHQFGG 108
 
Name Accession Description Interval E-value
phge_HK97_gp10 TIGR01725
phage protein, HK97 gp10 family; This model represents an uncharacterized, highly divergent ...
 3-139 4.25e-10

phage protein, HK97 gp10 family; This model represents an uncharacterized, highly divergent bacteriophage family. The family includes gp10 from HK022 and HK97. It appears related to TIGR01635, a phage morphogenesis family believed to be involved in tail completion. [Mobile and extrachromosomal element functions, Prophage functions]


Pssm-ID: 273775  Cd Length: 119  Bit Score: 53.58  E-value: 4.25e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1877793044   3 KNDFEIETNVDGVTKVIMQAAER-ALEAASIHMVGEVKDRAPVESGE----LRRSISRTIDNSGGKLVAKVGSNLQYAVY 77
Cdd:TIGR01725   2 TGLDELLQKLEKLGKKVDKEKVRkALKAGANVIRAKLKSNAPVSKGKkhgsLRDSIVKQKDNGVLSVTVGPGKTAWYARF 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1877793044  78 QEFGtgefaengagrkggwvyegpdgkvhfTRGSKPKKFLRDAFRANKKNIKSIINAEMRNL 139
Cdd:TIGR01725  82 LEFG--------------------------TRYMPAQPFMRPAFKQNKPKVIKIMIEELEAL 117
HK97-gp10_like pfam04883
Bacteriophage HK97-gp10, putative tail-component; This family of proteins is found in the ...
 7-81 1.92e-08

Bacteriophage HK97-gp10, putative tail-component; This family of proteins is found in the caudovirales. It may be a tail component.


Pssm-ID: 428172  Cd Length: 80  Bit Score: 48.10  E-value: 1.92e-08
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1877793044   7 EIETNVDGVTKVIMQAAERALEAASIHMVGEVKDRAPVES-GELRRSISRT---IDNSGGKLVAKVGSNLQYAVYQEFG 81
Cdd:pfam04883   2 KLIKKLEKLSKVAEKAAKKALKAAAAEVADEAKKNAPVDTtGKLRDSIKVGvnlVKEKGGELVVEVGSNAEYAHLVEFG 80
gpG COG5005
Mu-like prophage protein gpG [Mobilome: prophages, transposons];
44-82 8.18e-04

Mu-like prophage protein gpG [Mobilome: prophages, transposons];


Pssm-ID: 444029  Cd Length: 146  Bit Score: 37.21  E-value: 8.18e-04
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1877793044  44 VESGELRRSISRTIDNSGgklvAKVGSNLQYAVYQEFGT 82
Cdd:COG5005    74 QDTGDLRDSITYQAGDDS----VEVGSNLIYAAIHQFGG 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH