pB646L [African swine fever virus]
Protein Classification
Capsid_NCLDV domain-containing protein( domain architecture ID 10517185)
Capsid_NCLDV domain-containing protein
List of domain hits
| Name | Accession | Description | Interval | E-value | ||||
| Capsid_NCLDV | pfam04451 | Large eukaryotic DNA virus major capsid protein; This family includes the major capsid protein ... |
424-641 | 6.36e-32 | ||||
Large eukaryotic DNA virus major capsid protein; This family includes the major capsid protein of iridoviruses, chlorella virus and Spodoptera ascovirus, which are all dsDNA viruses with no RNA stage. This is the most abundant structural protein and can account for up to 45% of virion protein. In Chlorella virus PBCV-1 the major capsid protein is a glycoprotein. The four families of large eukaryotic DNA viruses, Poxviridae, Asfarviridae, Iridoviridae, and Phycodnaviridae, are referred to collectively as nucleocytoplasmic large DNA viruses or NCLDV. The virions of different NCLDV have dramatically different structures. The major capsid proteins of iridoviruses and phycodnaviruses, both of which have icosahedral capsids surrounding an inner lipid membrane, showed a high level of sequence conservation. A more limited, but statistically significant sequence similarity was observed between these proteins and the major capsid protein (p72) of ASFV, which also has an icosahedral capsid. It was surprising, however, to find that all of these proteins shared a conserved domain with the poxvirus protein D13L, which is an integral virion component thought to form a scaffold for the formation of viral crescents and immature virion. : Pssm-ID: 398248 Cd Length: 192 Bit Score: 122.48 E-value: 6.36e-32
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| Name | Accession | Description | Interval | E-value | ||||
| Capsid_NCLDV | pfam04451 | Large eukaryotic DNA virus major capsid protein; This family includes the major capsid protein ... |
424-641 | 6.36e-32 | ||||
Large eukaryotic DNA virus major capsid protein; This family includes the major capsid protein of iridoviruses, chlorella virus and Spodoptera ascovirus, which are all dsDNA viruses with no RNA stage. This is the most abundant structural protein and can account for up to 45% of virion protein. In Chlorella virus PBCV-1 the major capsid protein is a glycoprotein. The four families of large eukaryotic DNA viruses, Poxviridae, Asfarviridae, Iridoviridae, and Phycodnaviridae, are referred to collectively as nucleocytoplasmic large DNA viruses or NCLDV. The virions of different NCLDV have dramatically different structures. The major capsid proteins of iridoviruses and phycodnaviruses, both of which have icosahedral capsids surrounding an inner lipid membrane, showed a high level of sequence conservation. A more limited, but statistically significant sequence similarity was observed between these proteins and the major capsid protein (p72) of ASFV, which also has an icosahedral capsid. It was surprising, however, to find that all of these proteins shared a conserved domain with the poxvirus protein D13L, which is an integral virion component thought to form a scaffold for the formation of viral crescents and immature virion. Pssm-ID: 398248 Cd Length: 192 Bit Score: 122.48 E-value: 6.36e-32
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| Name | Accession | Description | Interval | E-value | ||||
| Capsid_NCLDV | pfam04451 | Large eukaryotic DNA virus major capsid protein; This family includes the major capsid protein ... |
424-641 | 6.36e-32 | ||||
Large eukaryotic DNA virus major capsid protein; This family includes the major capsid protein of iridoviruses, chlorella virus and Spodoptera ascovirus, which are all dsDNA viruses with no RNA stage. This is the most abundant structural protein and can account for up to 45% of virion protein. In Chlorella virus PBCV-1 the major capsid protein is a glycoprotein. The four families of large eukaryotic DNA viruses, Poxviridae, Asfarviridae, Iridoviridae, and Phycodnaviridae, are referred to collectively as nucleocytoplasmic large DNA viruses or NCLDV. The virions of different NCLDV have dramatically different structures. The major capsid proteins of iridoviruses and phycodnaviruses, both of which have icosahedral capsids surrounding an inner lipid membrane, showed a high level of sequence conservation. A more limited, but statistically significant sequence similarity was observed between these proteins and the major capsid protein (p72) of ASFV, which also has an icosahedral capsid. It was surprising, however, to find that all of these proteins shared a conserved domain with the poxvirus protein D13L, which is an integral virion component thought to form a scaffold for the formation of viral crescents and immature virion. Pssm-ID: 398248 Cd Length: 192 Bit Score: 122.48 E-value: 6.36e-32
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| Blast search parameters | ||||
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