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Conserved domains on  [gi|1583107492|ref|YP_009559982|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Acacia ligulata]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK06602 super family cl00535
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-116 3.33e-40

NADH:ubiquinone oxidoreductase subunit A; Validated


The actual alignment was detected with superfamily member PRK06602:

Pssm-ID: 469809 [Multi-domain]  Cd Length: 121  Bit Score: 129.60  E-value: 3.33e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492   1 MSEFAPICIYLVISLLVSLIPLGLPFPFSSNSSTyPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPW 80
Cdd:PRK06602    5 LAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPD-REKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPW 83

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1583107492  81 AVPPNKIDPFGSWSMMAFLLILTIGSLYEWKRGASD 116
Cdd:PRK06602   84 AVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALD 119
 
Name Accession Description Interval E-value
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-116 3.33e-40

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 129.60  E-value: 3.33e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492   1 MSEFAPICIYLVISLLVSLIPLGLPFPFSSNSSTyPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPW 80
Cdd:PRK06602    5 LAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPD-REKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPW 83

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1583107492  81 AVPPNKIDPFGSWSMMAFLLILTIGSLYEWKRGASD 116
Cdd:PRK06602   84 AVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALD 119
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 1-114 1.67e-37

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 122.92  E-value: 1.67e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492   1 MSEFAPICIYLVISLLVSLIPLGLPFpFSSNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPW 80
Cdd:COG0838     2 LSDYLPILIFLLVALGLALAMLLLSR-LLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1583107492  81 AVPPNKIDPFGSWSMMAFLLILTIGSLYEWKRGA 114
Cdd:COG0838    81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGA 114
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
30-114 2.40e-35

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 116.37  E-value: 2.40e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492  30 SNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPWAVPPNKIDPFGSWSMMAFLLILTIGSLYE 109
Cdd:pfam00507   8 GPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAILLVGLVYA 87


                  ....*
gi 1583107492 110 WKRGA 114
Cdd:pfam00507  88 WKKGA 92
 
Name Accession Description Interval E-value
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 1-116 3.33e-40

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 129.60  E-value: 3.33e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492   1 MSEFAPICIYLVISLLVSLIPLGLPFPFSSNSSTyPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPW 80
Cdd:PRK06602    5 LAHYLPFLIFLIVAIGLGILLLVAGKLLGPRAPD-REKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPW 83

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1583107492  81 AVPPNKIDPFGSWSMMAFLLILTIGSLYEWKRGASD 116
Cdd:PRK06602   84 AVSFREIGWLGFVEAMIFILVLLVGLVYLWRKGALD 119
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 1-114 1.67e-37

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 122.92  E-value: 1.67e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492   1 MSEFAPICIYLVISLLVSLIPLGLPFpFSSNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPW 80
Cdd:COG0838     2 LSDYLPILIFLLVALGLALAMLLLSR-LLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPW 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1583107492  81 AVPPNKIDPFGSWSMMAFLLILTIGSLYEWKRGA 114
Cdd:COG0838    81 AVVFRELGWFGLIEMLVFIAILLVGLIYAWKKGA 114
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
30-114 2.40e-35

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 116.37  E-value: 2.40e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492  30 SNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPWAVPPNKIDPFGSWSMMAFLLILTIGSLYE 109
Cdd:pfam00507   8 GPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPWAVSFRELGWFGFVEMLIFIAILLVGLVYA 87


                  ....*
gi 1583107492 110 WKRGA 114
Cdd:pfam00507  88 WKKGA 92
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 7-113 1.78e-28

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 99.75  E-value: 1.78e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492   7 ICIYLVISLLVSLIPLGLPFpFSSNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPWAVPPNK 86
Cdd:MTH00018    3 LFILLIFSVVLSALFSGASY-FLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQ 81

                          90       100
                  ....*....|....*....|....*..
gi 1583107492  87 IDPFGSWSMMAFLLILTIGSLYEWKRG 113
Cdd:MTH00018   82 IAPFGFWTMVGFLFILTLGLIYEWIKG 108
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 3-118 1.15e-27

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 97.86  E-value: 1.15e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492   3 EFAPICIYLVISLLVSLIPLGLPFPFSSNSSTyPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPWAV 82
Cdd:MTH00055    4 EFLGIFILLLFSIGLSTVISGASYIVGVKQPD-SEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCV 82

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1583107492  83 PPNKIDPFGSWSMMAFLLILTIGSLYEWKRGASDRE 118
Cdd:MTH00055   83 VYNQIGLFGFWVMYLFLIILTIGLIYEWVKGGLEWE 118
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 11-114 1.25e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 80.36  E-value: 1.25e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492  11 LVISLLVSLIPLGLPFPFSSNSSTYP--EKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPWAVPPNKID 88
Cdd:MTH00030   14 LGVGIILLLVSISFTLGNSRIGLTKPdsEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWSIVFNQLN 93

                          90       100
                  ....*....|....*....|....*.
gi 1583107492  89 PFGSWSMMAFLLILTIGSLYEWKRGA 114
Cdd:MTH00030   94 LFSFWIVYTFLIVLAIGLAYEWIKGG 119
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 7-114 2.22e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 79.15  E-value: 2.22e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492   7 ICIYLVISLLVSLIPLGLPfpfssNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEV--TFSFPWAVPP 84
Cdd:MTH00113    7 LTISLALSTILTTLNFWLT-----QTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIalLLPLPWAINL 81

                          90       100       110
                  ....*....|....*....|....*....|
gi 1583107492  85 NKIDPFGSWSMMAFLLiLTIGSLYEWKRGA 114
Cdd:MTH00113   82 TTPTTTLTWATIILTL-LTLGLIYEWLQGG 110
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 7-113 4.64e-20

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 78.50  E-value: 4.64e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492   7 ICIYLVISLLVSLIPLGLPFPFSSNSSTYpEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVT--FSFPWAV-- 82
Cdd:MTH00069    2 IMLMLLISTILSLILITISFWLPLNNPDS-EKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIAllLPTPWASql 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1583107492  83 --PPNKIdpfgSWSMMaFLLILTIGSLYEWKRG 113
Cdd:MTH00069   81 ntPTNTL----FWSTL-ILILLTLGLIYEWIQG 108
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 7-114 1.37e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 77.12  E-value: 1.37e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492   7 ICIYLVISLLVSLIPLGLPFPFSSNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPwAVPPNK 86
Cdd:MTH00161    2 ILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLP-MIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|
gi 1583107492  87 IDPFGSWSMM--AFLLILTIGSLYEWKRGA 114
Cdd:MTH00161   81 TSNMMSWLITssFFILILLLGLYYEWNQGA 110
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 9-116 9.88e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 74.89  E-value: 9.88e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492   9 IYLVISLLVSLIPLGLPFPFSSNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPWAVPPNKID 88
Cdd:MTH00148    6 LSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGSSF 85

                          90       100
                  ....*....|....*....|....*....
gi 1583107492  89 PFGSWSM-MAFLLILTIGSLYEWKRGASD 116
Cdd:MTH00148   86 SVWSLTSlFIFLLILILGLFHEWNEGSLD 114
ndhC CHL00022
NADH dehydrogenase subunit 3
 9-114 1.26e-18

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 75.02  E-value: 1.26e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492   9 IYLVISllvSLIPLgLPFPFSS---NSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPWAVPPN 85
Cdd:CHL00022   12 AFLIIS---SLIPI-LAFLISGllaPISKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPWAMSFD 87

                          90       100
                  ....*....|....*....|....*....
gi 1583107492  86 KIDPFGSWSMMAFLLILTIGSLYEWKRGA 114
Cdd:CHL00022   88 VLGVSAFIEALIFVLILIVGLVYAWRKGA 116
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 1-113 8.33e-18

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 72.78  E-value: 8.33e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492   1 MSEFAPICIYLVIS---LLVSLIPLGLPFPFSSNSStypeKLSAYECGFDPFGDARS--RFDIRFYLVSILFIIPDPEVT 75
Cdd:PRK07928    1 MNVYIPILVLGALAaafAVVSVVVASLVGPKRYNRA----KLEAYECGIEPTPQPAGggRFPVKYYLTAMLFIVFDIEIV 76

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 1583107492  76 FSFPWAVPPNKIDPFGSWSMMAFLLILTIGSLYEWKRG 113
Cdd:PRK07928   77 FLYPWAVSFDALGVFGLVEMALFMLTVFVAYAYVWRRG 114
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
37-112 1.60e-17

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 72.08  E-value: 1.60e-17
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1583107492  37 EKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPWAVPPNKIDPFGSWSMMAFLLILTIGSLYEWKR 112
Cdd:PRK07756   41 AKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPWAVAYDKLGLFALIEMLIFVVMLLVGLAYAWKK 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 9-116 1.45e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 69.54  E-value: 1.45e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492   9 IYLVISLLVSLIpLGLPFPFSSNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPWAVpPNKID 88
Cdd:MTH00203    6 LFFLIALLLSLI-LLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPW-SNQLS 83

                          90       100
                  ....*....|....*....|....*...
gi 1583107492  89 PFGSWSMMAFLLILTIGSLYEWKRGASD 116
Cdd:MTH00203   84 SLSLLLAFLFLILLTLGLIYEWLQGGLE 111
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 9-116 4.34e-16

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 68.35  E-value: 4.34e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492   9 IYLVISLLVSLIPLGLPFPFSSNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPWAVPPNKID 88
Cdd:MTH00012    6 IPMMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTST 85

                          90       100
                  ....*....|....*....|....*....
gi 1583107492  89 PFGS-WSMMAFLLILTIGSLYEWKRGASD 116
Cdd:MTH00012   86 SKTVvYTSILFLLILVIGLIHEWREGSLD 114
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
38-114 5.15e-16

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 68.54  E-value: 5.15e-16
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1583107492  38 KLSAYECGFDPFGDArSRFDIRFYLVSILFIIPDPEVTFSFPWAVPPNKIDPFGSWSMMAFLLILTIGSLYEWKRGA 114
Cdd:PRK08489   47 KLAIYECGPEPVKQP-NRISSHFYIMALLFILFDVEIVFMFPWAVDFKLLGLFGLIEMLLFIVLLTIGFIYAWKKGA 122
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 6-113 5.72e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 68.02  E-value: 5.72e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492   6 PICIYLVISLLVSLIPLGLPFPFSSNSSTYpEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVT--FSFPWAVP 83
Cdd:MTH00136    3 LITTILTITIALSLILAIVSFWLPQMTPDH-EKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIAllLPLPWGDQ 81

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1583107492  84 -PNKIDPFgSWSmMAFLLILTIGSLYEWKRG 113
Cdd:MTH00136   82 lPSPLLTF-FWA-TAVLILLTLGLIYEWLQG 110
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 9-113 1.34e-14

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 64.62  E-value: 1.34e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492   9 IYLVISLLVSLIpLGLPFPFSSNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPWAVPPNKID 88
Cdd:MTH00042    6 FFLLIILILTSL-LLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITN 84

                          90       100
                  ....*....|....*....|....*.
gi 1583107492  89 PFGSWSM-MAFLLILTIGSLYEWKRG 113
Cdd:MTH00042   85 PSTLLPIsLIFLIILTIGLVYEWVNG 110
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 13-110 1.58e-14

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 64.19  E-value: 1.58e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492  13 ISLLVSLIPLGLPfpfssNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVT--FSFPWAVPPNKIDpf 90
Cdd:MTH00106   13 LASLLVLIAFWLP-----QLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIAllLPLPWASQTNNLN-- 85

                          90       100
                  ....*....|....*....|..
gi 1583107492  91 gSWSMMAFLLI--LTIGSLYEW 110
Cdd:MTH00106   86 -TMLTMALLLIslLALSLAYEW 106
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 11-116 1.50e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 61.93  E-value: 1.50e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107492  11 LVISLLVSLIPLGLPFPFSSNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEVTFSFPWAVPPNKIDPF 90
Cdd:MTH00202    8 SILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSWSK 87

                          90       100
                  ....*....|....*....|....*..
gi 1583107492  91 GSW-SMMAFLLILTIGSLYEWKRGASD 116
Cdd:MTH00202   88 GGLlGGTIFLLILIGGLIHEWKEGSLD 114
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 11-74 3.32e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 37.18  E-value: 3.32e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1583107492  11 LVISLLVSLIPLGLPFpFSSNSSTYPEKLSAYECGFDPFGDARSRFDIRFYLVSILFIIPDPEV 74
Cdd:MTH00092    8 FLFTLLLLMLLYLLNF-FLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEI 70
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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