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Conserved domains on  [gi|1583107286|ref|YP_009559707|]
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NADH dehydrogenase subunit H (plastid) [Lycopodium clavatum]

Protein Classification

NADH dehydrogenase subunit 7( domain architecture ID 10000011)

NADH dehydrogenase subunit 7, also called NAD(P)H-quinone oxidoreductase subunit H, is a component of NDH that shuttles electrons from NAD(P)H:plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ndhH CHL00017
NADH dehydrogenase subunit 7
 1-393 0e+00

NADH dehydrogenase subunit 7


:

Pssm-ID: 176960  Cd Length: 393  Bit Score: 905.22  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286   1 MTVLATEKNPMIVSMGPHHPSMHGVLRLIVTLDGENVINCEPVLGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017    1 MTVPATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286  81 ITVNAPEKLANIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYILRERETVYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017   81 ITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 161 GGVAVDLPYGWVDKCSDFCNYFSPKVDEYERLITCNPIFLERVEGVGTIGREEAINWGLSGPMLRASGVQWDLRKVDHYE 240
Cdd:CHL00017  161 GGVAADLPYGWIDKCLDFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 241 CYDELDWQIQWQREGDSLARYLVRIGETKESVRIVQQALKVIPGGPYENLEARRLNQGKNSEWNDFEYQFISKKPSPTFK 320
Cdd:CHL00017  241 CYDEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEARRFDREKDSEWNDFEYRFISKKPSPTFE 320

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1583107286 321 LPKQEHYVRVEAPKGELGIFLMGDDSAFPWRWKIRPPGFINLQILPQLVKGMKLADIMTILGSIDITMGEVDR 393
Cdd:CHL00017  321 LSKQELYVRVEAPKGELGIFLIGDDSVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
 
Name Accession Description Interval E-value
ndhH CHL00017
NADH dehydrogenase subunit 7
 1-393 0e+00

NADH dehydrogenase subunit 7


Pssm-ID: 176960  Cd Length: 393  Bit Score: 905.22  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286   1 MTVLATEKNPMIVSMGPHHPSMHGVLRLIVTLDGENVINCEPVLGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017    1 MTVPATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286  81 ITVNAPEKLANIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYILRERETVYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017   81 ITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 161 GGVAVDLPYGWVDKCSDFCNYFSPKVDEYERLITCNPIFLERVEGVGTIGREEAINWGLSGPMLRASGVQWDLRKVDHYE 240
Cdd:CHL00017  161 GGVAADLPYGWIDKCLDFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 241 CYDELDWQIQWQREGDSLARYLVRIGETKESVRIVQQALKVIPGGPYENLEARRLNQGKNSEWNDFEYQFISKKPSPTFK 320
Cdd:CHL00017  241 CYDEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEARRFDREKDSEWNDFEYRFISKKPSPTFE 320

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1583107286 321 LPKQEHYVRVEAPKGELGIFLMGDDSAFPWRWKIRPPGFINLQILPQLVKGMKLADIMTILGSIDITMGEVDR 393
Cdd:CHL00017  321 LSKQELYVRVEAPKGELGIFLIGDDSVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
NuoD COG0649
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
 7-393 0e+00

NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440414 [Multi-domain]  Cd Length: 390  Bit Score: 593.20  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286   7 EKNPMIVSMGPHHPSMHGVLRLIVTLDGENVINCEPVLGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAP 86
Cdd:COG0649     3 ETEEMVLNMGPQHPSTHGVLRLVLELDGETVVDADPHIGYLHRGFEKLAENRTYTQIIPYTDRLDYLSPMNNELAYVLAV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286  87 EKLANIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYILRERETVYDLFEAATGMRMMHNYFRIGGVAVD 166
Cdd:COG0649    83 EKLLGIEVPERAQYIRVILAELNRIASHLLWLGTYALDLGAMTPFLYAFREREKILDLFEEVTGARMTHNYFRIGGVRRD 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 167 LPYGWVDKCSDFCNYFSPKVDEYERLITCNPIFLERVEGVGTIGREEAINWGLSGPMLRASGVQWDLRKVDHYECYDELD 246
Cdd:COG0649   163 LPDGFLEKVREFLDYFPKRLDEYEDLLTGNRIFKARTKGVGVLSAEDAIALGVTGPVLRASGVDYDLRKDEPYSGYDELD 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 247 WQIQWQREGDSLARYLVRIGETKESVRIVQQALKVIPGGPYENLEARRLNQGKNSEWNDFE---YQFisKKPSPTFKLPK 323
Cdd:COG0649   243 FDVPVGTEGDCYDRYLVRMEEMRQSLRIIRQCLDKLPEGPVMAKDPKIAPPPKEEMKTSMEaliHHF--KLVTEGFKVPA 320

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 324 QEHYVRVEAPKGELGIFLMGDDSAFPWRWKIRPPGFINLQILPQLVKGMKLADIMTILGSIDITMGEVDR 393
Cdd:COG0649   321 GEVYAAVESPRGELGFYLVSDGGTKPYRVKIRSPSFANLQALPEMLKGHMLADVVAILGSLDIVLGEVDR 390
NuoD TIGR01962
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
 11-393 6.13e-157

NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]


Pssm-ID: 273898  Cd Length: 386  Bit Score: 447.17  E-value: 6.13e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286  11 MIVSMGPHHPSMHGVLRLIVTLDGENVINCEPVLGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEKLA 90
Cdd:TIGR01962   3 MILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLDYLSPFSNELAYCLAVEKLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286  91 NIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYILRERETVYDLFEAATGMRMMHNYFRIGGVAVDLPYG 170
Cdd:TIGR01962  83 GIEVPRRAQVIRVMLSELNRISSHLLFIGTHALDLGAMTPFLYAFREREKILDLFEAITGARMHSAYFRIGGVALDLPEN 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 171 WVDKCSDFCNYFSPKVDEYERLITCNPIFLERVEGVGTIGREEAINWGLSGPMLRASGVQWDLRKVDHYECYDELDWQIQ 250
Cdd:TIGR01962 163 WLEEIREFLEQFPKRLRDYETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKSEPYEGYDEYDFDVP 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 251 WQREGDSLARYLVRIGETKESVRIVQQALKVIPGGPYEnLEARRLNQGKNSEWNDFEYQFIS--KKPSPTFKLPKQEHYV 328
Cdd:TIGR01962 243 VGGNGDCYDRYLLRVLEMRESIKIIEQCLEKMPPGPIK-ADNPKLAPPPKERMLTSMEALIHhfKLVTEGFRVPAGEVYV 321

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1583107286 329 RVEAPKGELGIFLMGDDSAFPWRWKIRPPGFINLQILPQLVKGMKLADIMTILGSIDITMGEVDR 393
Cdd:TIGR01962 322 PIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALEAMCVGHYLADLIAILGSIDPVMGEVDR 386
Complex1_49kDa pfam00346
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393 2.59e-143

Respiratory-chain NADH dehydrogenase, 49 Kd subunit;


Pssm-ID: 459772  Cd Length: 270  Bit Score: 407.93  E-value: 2.59e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 125 IGAQTPFFYILRERETVYDLFEAATGMRMMHNYFRIGGVAVDLPYGWVDKCSDFCNYFSPKVDEYERLITCNPIFLERVE 204
Cdd:pfam00346   1 LGAMTPFLYAFREREKILDLFERITGARMTHSYFRPGGVARDLPEGFLEKIREFLDYFPKRLDEYEDLLTRNRIFKDRTK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 205 GVGTIGREEAINWGLSGPMLRASGVQWDLRKVDHYECYDELDWQIQWQREGDSLARYLVRIGETKESVRIVQQALKVIPG 284
Cdd:pfam00346  81 GVGVLSAEDALALGVTGPMLRASGVPWDLRKDEPYSGYDELDFDVPVGTEGDCYDRYLVRMEEMRQSLRIIRQCLDKLPE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 285 GPYENLEARRLNQGKN---SEWNDFEYQFisKKPSPTFKLPKQEHYVRVEAPKGELGIFLMGDDSAFPWRWKIRPPGFIN 361
Cdd:pfam00346 161 GPVMADDPKIALPPKEemkTSMEALIHHF--KLVTEGFRVPAGEVYVAVEAPKGELGFYLVSDGGTKPYRVKIRAPSFAN 238

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1583107286 362 LQILPQLVKGMKLADIMTILGSIDITMGEVDR 393
Cdd:pfam00346 239 LQALPEMCKGHMLADVVAIIGSIDIVMGEVDR 270
 
Name Accession Description Interval E-value
ndhH CHL00017
NADH dehydrogenase subunit 7
 1-393 0e+00

NADH dehydrogenase subunit 7


Pssm-ID: 176960  Cd Length: 393  Bit Score: 905.22  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286   1 MTVLATEKNPMIVSMGPHHPSMHGVLRLIVTLDGENVINCEPVLGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:CHL00017    1 MTVPATRKDLMIVNMGPHHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286  81 ITVNAPEKLANIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYILRERETVYDLFEAATGMRMMHNYFRI 160
Cdd:CHL00017   81 ITVNAPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYIFRERELIYDLFEAATGMRMMHNYFRI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 161 GGVAVDLPYGWVDKCSDFCNYFSPKVDEYERLITCNPIFLERVEGVGTIGREEAINWGLSGPMLRASGVQWDLRKVDHYE 240
Cdd:CHL00017  161 GGVAADLPYGWIDKCLDFCDYFLTGVAEYQKLITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYE 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 241 CYDELDWQIQWQREGDSLARYLVRIGETKESVRIVQQALKVIPGGPYENLEARRLNQGKNSEWNDFEYQFISKKPSPTFK 320
Cdd:CHL00017  241 CYDEFDWEVQWQKEGDSLARYLVRIGEMTESIKIIQQALEGIPGGPYENLEARRFDREKDSEWNDFEYRFISKKPSPTFE 320

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1583107286 321 LPKQEHYVRVEAPKGELGIFLMGDDSAFPWRWKIRPPGFINLQILPQLVKGMKLADIMTILGSIDITMGEVDR 393
Cdd:CHL00017  321 LSKQELYVRVEAPKGELGIFLIGDDSVFPWRWKIRPPGFINLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
PRK07415 PRK07415
NAD(P)H-quinone oxidoreductase subunit H; Validated
 1-393 0e+00

NAD(P)H-quinone oxidoreductase subunit H; Validated


Pssm-ID: 180969 [Multi-domain]  Cd Length: 394  Bit Score: 775.45  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286   1 MTVLATEKNPMIVSMGPHHPSMHGVLRLIVTLDGENVINCEPVLGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEA 80
Cdd:PRK07415    1 MAQLETRTEPMVLNFGPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAENRTNVMYVPYVSRWDYAAGMFNEA 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286  81 ITVNAPEKLANIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYILRERETVYDLFEAATGMRMM-HNYFR 159
Cdd:PRK07415   81 ITVNAPEKLANIPVPKRASYIRVIMLELNRIANHLLWLGPFLADVGAQTPFFYIFREREMIYDLWEAATGQRLInNNYFR 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 160 IGGVAVDLPYGWVDKCSDFCNYFSPKVDEYERLITCNPIFLERVEGVGTIGREEAINWGLSGPMLRASGVQWDLRKVDHY 239
Cdd:PRK07415  161 IGGVAADLPYGWLEKCLDFCDYFGPKIDEYEKLITNNPIFRRRIEGLGTISREEAINWGLSGPMLRASGVKWDLRKVDHY 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 240 ECYDELDWQIQWQREGDSLARYLVRIGETKESVRIVQQALKVIPGGPYENLEARRLNQGKNSEWNDFEYQFISKKPSPTF 319
Cdd:PRK07415  241 ECYDDFDWDVAWETEGDCLARYRVRIEEMRESVKIIRQACKGIPGGPYENLEAKRMAEGKKSEWNGFDYQYVAKKVAPTF 320

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1583107286 320 KLPKQEHYVRVEAPKGELGIFLMGDDSAFPWRWKIRPPGFINLQILPQLVKGMKLADIMTILGSIDITMGEVDR 393
Cdd:PRK07415  321 KIPNGELYVRLESGKGELGIFIQGNNDVTPWRWKIRAADFNNLQILPHLLKGAKVADIMAILGSIDVIMGSVDR 394
NuoD COG0649
NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; ...
 7-393 0e+00

NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) [Energy production and conversion]; NADH:ubiquinone oxidoreductase 49 kD subunit (chain D) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440414 [Multi-domain]  Cd Length: 390  Bit Score: 593.20  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286   7 EKNPMIVSMGPHHPSMHGVLRLIVTLDGENVINCEPVLGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAP 86
Cdd:COG0649     3 ETEEMVLNMGPQHPSTHGVLRLVLELDGETVVDADPHIGYLHRGFEKLAENRTYTQIIPYTDRLDYLSPMNNELAYVLAV 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286  87 EKLANIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYILRERETVYDLFEAATGMRMMHNYFRIGGVAVD 166
Cdd:COG0649    83 EKLLGIEVPERAQYIRVILAELNRIASHLLWLGTYALDLGAMTPFLYAFREREKILDLFEEVTGARMTHNYFRIGGVRRD 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 167 LPYGWVDKCSDFCNYFSPKVDEYERLITCNPIFLERVEGVGTIGREEAINWGLSGPMLRASGVQWDLRKVDHYECYDELD 246
Cdd:COG0649   163 LPDGFLEKVREFLDYFPKRLDEYEDLLTGNRIFKARTKGVGVLSAEDAIALGVTGPVLRASGVDYDLRKDEPYSGYDELD 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 247 WQIQWQREGDSLARYLVRIGETKESVRIVQQALKVIPGGPYENLEARRLNQGKNSEWNDFE---YQFisKKPSPTFKLPK 323
Cdd:COG0649   243 FDVPVGTEGDCYDRYLVRMEEMRQSLRIIRQCLDKLPEGPVMAKDPKIAPPPKEEMKTSMEaliHHF--KLVTEGFKVPA 320

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 324 QEHYVRVEAPKGELGIFLMGDDSAFPWRWKIRPPGFINLQILPQLVKGMKLADIMTILGSIDITMGEVDR 393
Cdd:COG0649   321 GEVYAAVESPRGELGFYLVSDGGTKPYRVKIRSPSFANLQALPEMLKGHMLADVVAILGSLDIVLGEVDR 390
PRK06075 PRK06075
NADH-quinone oxidoreductase subunit D;
6-393 8.73e-176

NADH-quinone oxidoreductase subunit D;


Pssm-ID: 180385 [Multi-domain]  Cd Length: 392  Bit Score: 495.06  E-value: 8.73e-176
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286   6 TEKNPMIVSMGPHHPSMHGVLRLIVTLDGENVINCEPVLGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNA 85
Cdd:PRK06075    2 AEIRNYTLNFGPQHPAAHGVLRLILELDGEVVVRADPHIGYLHRGTEKLAEYRTYLQAIPYFDRLDYVSPMNNEHAYCLA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286  86 PEKLANIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYILRERETVYDLFEAATGMRMMHNYFRIGGVAV 165
Cdd:PRK06075   82 VEKLLGIEVPERAQYIRVLFLELNRILSHLLWLGTHALDLGAMTVFLWGFREREKLLDLYEAVTGARMHHAYIRPGGVRR 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 166 DLPYGWVDKCSDFCNYFSPKVDEYERLITCNPIFLERVEGVGTIGREEAINWGLSGPMLRASGVQWDLRKVDHYECYDEL 245
Cdd:PRK06075  162 DLPDGLLEDIRDFLDYFPKRLDDYETLLTDNRIWKQRLVGVGVVSKERALALGFTGPMLRASGVAWDLRKSQPYEVYDEL 241

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 246 DWQIQWQREGDSLARYLVRIGETKESVRIVQQALKVI--PGGPYENlEARRLNQGKNSEWNDFEYQFIS--KKPSPTFKL 321
Cdd:PRK06075  242 DFDVPVGKNGDCYDRYLVRVEEMRQSLRIIEQCLDRLrpPPGPVMV-DDPKIAPPARLEMKTSMEALIHhfKLVTEGFRV 320

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1583107286 322 PKQEHYVRVEAPKGELGIFLMGDDSAFPWRWKIRPPGFINLQILPQLVKGMKLADIMTILGSIDITMGEVDR 393
Cdd:PRK06075  321 PAGEVYAAVESPKGEFGVYLVSDGGNKPYRVKIRAPSFAHLQALDEMCRGHMLADVVAIIGSLDIVFGEVDR 392
PRK12322 PRK12322
NADH-quinone oxidoreductase subunit D;
4-393 2.00e-161

NADH-quinone oxidoreductase subunit D;


Pssm-ID: 183437 [Multi-domain]  Cd Length: 366  Bit Score: 457.63  E-value: 2.00e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286   4 LATEKnpMIVSMGPHHPSMHGVLRLIVTLDGENVINCEPVLGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITV 83
Cdd:PRK12322    2 LRTEE--MLLNVGPQHPSTHGVFRLVLKIDGEIIVEATPVIGYLHRGTEKLAESLQYTQIIPYTDRMDYLSAMTNNYVYC 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286  84 NAPEKLANIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYILRERETVYDLFEAATGMRMMHNYFRIGGV 163
Cdd:PRK12322   80 HAVETMMGLEVPERAEYLRVIAMELGRIASHLVWWGTYLLDIGAVSPFLYAFREREMIINLLNELCGARLTFNYMRIGGV 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 164 AVDLPYGWVDKCSDFCNYFSPKVDEYERLITCNPIFLERVEGVGTIGREEAINWGLSGPMLRASGVQWDLRKVDHYECYD 243
Cdd:PRK12322  160 KWDAPDGWIEKVKEFVPYMREQLAGYHDLVTGNEIFLNRVKGVGIYSAEEAISYSLSGVNLRCTGVNWDLRKDEPYSIYD 239

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 244 ELDWQIQWQREGDSLARYLVRIGETKESVRIVQQALKVIP-GGPyenlearrlnqgknsewndfeyqfISKKPSPTFKLP 322
Cdd:PRK12322  240 RFDFDIPVGSVGDCWDRYVCRMQEIEQSLKIIEQAVEQFPkEGP------------------------VLAKVPKIIKAP 295

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1583107286 323 KQEHYVRVEAPKGELGIFLMGDDSAFPWRWKIRPPGFINLQILPQLVKGMKLADIMTILGSIDITMGEVDR 393
Cdd:PRK12322  296 KGEAYVRIESPRGEIGCYIASDGKKKPYRLKFRRPSFYNLQILPKLLKGENIANLIAILGSIDIVLGEVDG 366
NuoD TIGR01962
NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH ...
 11-393 6.13e-157

NADH dehydrogenase I, D subunit; This model recognizes specificially the D subunit of NADH dehydrogenase I complex. It excludes the related chain of NAD(P)H-quinone oxidoreductases from chloroplast and Synechocystis, where the quinone may be plastoquinone rather than ubiquinone. This subunit often appears as a C/D fusion. [Energy metabolism, Electron transport]


Pssm-ID: 273898  Cd Length: 386  Bit Score: 447.17  E-value: 6.13e-157
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286  11 MIVSMGPHHPSMHGVLRLIVTLDGENVINCEPVLGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEKLA 90
Cdd:TIGR01962   3 MILNLGPQHPSTHGVLRLILELDGEYVVRADPHIGYLHRGTEKLAENRTYQQYIPYTDRLDYLSPFSNELAYCLAVEKLL 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286  91 NIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYILRERETVYDLFEAATGMRMMHNYFRIGGVAVDLPYG 170
Cdd:TIGR01962  83 GIEVPRRAQVIRVMLSELNRISSHLLFIGTHALDLGAMTPFLYAFREREKILDLFEAITGARMHSAYFRIGGVALDLPEN 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 171 WVDKCSDFCNYFSPKVDEYERLITCNPIFLERVEGVGTIGREEAINWGLSGPMLRASGVQWDLRKVDHYECYDELDWQIQ 250
Cdd:TIGR01962 163 WLEEIREFLEQFPKRLRDYETLLNENRIWKQRTQGVGVVSAKDALDWGLTGPMLRGSGIDWDIRKSEPYEGYDEYDFDVP 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 251 WQREGDSLARYLVRIGETKESVRIVQQALKVIPGGPYEnLEARRLNQGKNSEWNDFEYQFIS--KKPSPTFKLPKQEHYV 328
Cdd:TIGR01962 243 VGGNGDCYDRYLLRVLEMRESIKIIEQCLEKMPPGPIK-ADNPKLAPPPKERMLTSMEALIHhfKLVTEGFRVPAGEVYV 321

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1583107286 329 RVEAPKGELGIFLMGDDSAFPWRWKIRPPGFINLQILPQLVKGMKLADIMTILGSIDITMGEVDR 393
Cdd:TIGR01962 322 PIESPKGELGFYIISDGGTKPYRLKIRAPSFAHLQALEAMCVGHYLADLIAILGSIDPVMGEVDR 386
Complex1_49kDa pfam00346
Respiratory-chain NADH dehydrogenase, 49 Kd subunit;
125-393 2.59e-143

Respiratory-chain NADH dehydrogenase, 49 Kd subunit;


Pssm-ID: 459772  Cd Length: 270  Bit Score: 407.93  E-value: 2.59e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 125 IGAQTPFFYILRERETVYDLFEAATGMRMMHNYFRIGGVAVDLPYGWVDKCSDFCNYFSPKVDEYERLITCNPIFLERVE 204
Cdd:pfam00346   1 LGAMTPFLYAFREREKILDLFERITGARMTHSYFRPGGVARDLPEGFLEKIREFLDYFPKRLDEYEDLLTRNRIFKDRTK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 205 GVGTIGREEAINWGLSGPMLRASGVQWDLRKVDHYECYDELDWQIQWQREGDSLARYLVRIGETKESVRIVQQALKVIPG 284
Cdd:pfam00346  81 GVGVLSAEDALALGVTGPMLRASGVPWDLRKDEPYSGYDELDFDVPVGTEGDCYDRYLVRMEEMRQSLRIIRQCLDKLPE 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 285 GPYENLEARRLNQGKN---SEWNDFEYQFisKKPSPTFKLPKQEHYVRVEAPKGELGIFLMGDDSAFPWRWKIRPPGFIN 361
Cdd:pfam00346 161 GPVMADDPKIALPPKEemkTSMEALIHHF--KLVTEGFRVPAGEVYVAVEAPKGELGFYLVSDGGTKPYRVKIRAPSFAN 238

                         250       260       270
                  ....*....|....*....|....*....|..
gi 1583107286 362 LQILPQLVKGMKLADIMTILGSIDITMGEVDR 393
Cdd:pfam00346 239 LQALPEMCKGHMLADVVAIIGSIDIVMGEVDR 270
PRK13292 PRK13292
NADH-quinone oxidoreductase subunit B/C/D;
11-393 2.71e-135

NADH-quinone oxidoreductase subunit B/C/D;


Pssm-ID: 183955 [Multi-domain]  Cd Length: 788  Bit Score: 405.70  E-value: 2.71e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286  11 MIVSMGPHHPSMHGVLRLIVTLDGENVINCEPVLGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEKLA 90
Cdd:PRK13292  405 LILNLGPQHPGTHGIIRFVLKLDGEEIVDMDSDIGYHHRGAEKIGERQHWNQFIPYTDRIDYLAGVQNNLAYVNSVETLC 484

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286  91 NIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYILRERETVYDLFEAATGMRMMHNYFRIGGVAVDLPYG 170
Cdd:PRK13292  485 GIEVPDRAIYIRVMLSELFRIANHLVWLGTFAADVGAMTPVFYTFTDREKIFDIVEMITGGRMHPAWFRIGGVAEDLPEG 564

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 171 WVDKCSDFCNYFSPKVDEYERLITCNPIFLERVEGVGTIGREEAINWGLSGPMLRASGVQWDLRKVDHYECYDELDWQIQ 250
Cdd:PRK13292  565 WKEAVEAFLRWFPGRLKEYEDLLTGNPIFKARLKGVGVITRDEAVEWGISGPNLRACGLAWDLRKKMPYGGYDRFDFEVP 644

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 251 WQREGDSLARYLVRIGETKESVRIVQQALKVIPGGPYENLEARRLNQGKNSEWNDFE---YQFISKKPSPTfkLPKQEHY 327
Cdd:PRK13292  645 TAEGGDCYARYLVRMEEMRQSLRIVRQAAAGMPGGRWISDDYRYVLPQKRDTLKDIEsliHHFVNVTRGPA--PPKGECY 722

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1583107286 328 VRVEAPKGELGIFLMGDDSAFPWRWKIRPPGFINLQILPQLVKGMKLADIMTILGSIDITMGEVDR 393
Cdd:PRK13292  723 AAIEAPKGENGYFVVSDGLNIAYRMRIRTPSFPHIQALPLLSRGWLVADFLAIIGSIDFVLADLDR 788
PRK11742 PRK11742
bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional
 11-393 2.46e-119

bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional


Pssm-ID: 236965 [Multi-domain]  Cd Length: 575  Bit Score: 358.08  E-value: 2.46e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286  11 MIVSMGPHHPSMHGVLRLIVTLDGENVINCEPVLGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEKLA 90
Cdd:PRK11742  192 MFLNLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIDYLGGCMNEMPYVLAVEKLA 271

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286  91 NIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYILRERETVYDLFEAATGMRMMHNYFRIGGVAVDLPYG 170
Cdd:PRK11742  272 GITVPDRVNVIRVMLSELFRINSHLLYIGTFIQDVGAMTPVFFAFTDRQKIYDVIEAITGFRMHPAWFRIGGVAHDLPRG 351

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 171 WVDKCSDFCNYFSPKVDEYERLITCNPIFLERVEGVGTIGREEAINWGLSGPMLRASGVQWDLRKVDHYECYDELDWQIQ 250
Cdd:PRK11742  352 WDRLLREFLDWMPKRLDEYEKAALRNSILKGRTQGVAAYNAKEALEWGVTGAGLRATGIDFDVRKARPYSGYENFDFEVP 431

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 251 WQREGDSLARYLVRIGETKESVRIVQQALKVIPGGPYENLEARRLNQGKNSEWNDFE---YQFISKKPSPTfkLPKQEHY 327
Cdd:PRK11742  432 VGGNGDCYDRVMVKVEEMRQSLRIIEQCLDNMPEGPFKADHPLTTPPPKERTLQHIEtliTHFLQVSWGPV--MPANESF 509

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1583107286 328 VRVEAPKGELGIFLMGDDSAFPWRWKIRPPGFINLQILPQLVKGMKLADIMTILGSIDITMGEVDR 393
Cdd:PRK11742  510 QMIEATKGINSYYLTSDGSTMSYRTRIRTPSFAHLQQIPSVIRGSLVSDLIVYLGSIDFVMSDVDR 575
HycE2 COG3261
Ni,Fe-hydrogenase III large subunit [Energy production and conversion];
11-393 1.53e-104

Ni,Fe-hydrogenase III large subunit [Energy production and conversion];


Pssm-ID: 442492 [Multi-domain]  Cd Length: 479  Bit Score: 316.91  E-value: 1.53e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286  11 MIVSMGPHHPSMHGVLRLIVTLDGENVINCEPVLGYLHRGMEKIAENRTIIQYLPYVTR----------WDYlatmfTEA 80
Cdd:COG3261   123 HEIPVGPVHAGLIEPGHFRFSVEGERILDLEIRLGYVHRGIEKLAEGRDYEQALYLAERicgicsvahaLAY-----CQA 197

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286  81 ItvnapEKLANIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFFYILRERETVYDLFEAATGMRMMHNYFRI 160
Cdd:COG3261   198 V-----EKAAGIEVPPRAQYLRVILLELERIHSHLLDLGALANDVGFETLFMQCWRLRERVLDLNEALTGNRVLRGINVP 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 161 GGVAVDLPYGWVDKCSDFCNYFSPKVDEYERLITCNPIFLERVEGVGTIGREEAINWGLSGPMLRASGVQWDLRKVDHYE 240
Cdd:COG3261   273 GGVRRDLDPEQLKAILERLDELEEEVKELVDLFLNDPSVLDRLVGTGVLSKEDARDLGAVGPVARASGVDRDVRRDHPYA 352

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286 241 CYDELDWQIQWQREGDSLARYLVRIGETKESVRIVQQALKVIPGGPyenlearrlnqgknsewndfeyqfISKKPSPTFk 320
Cdd:COG3261   353 AYDELDFKVVTETEGDVYARALVRLEEIFESLDLIRQALEKLPEGP------------------------IRVPVPGLP- 407

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1583107286 321 lPKQEHYVRVEAPKGELGIFLMGDDSAFPWRWKIRPPGFINLQILPQLVKGMKLADIMTILGSIDITMGEVDR 393
Cdd:COG3261   408 -PDGEGLGRVEAPRGELVHYVRTDGDGRLERVKIRTPSFANWPALELALRGNIVADFPLINKSFDPCYSCTDR 479
PRK10170 PRK10170
Ni/Fe-hydrogenase large subunit;
22-116 2.42e-03

Ni/Fe-hydrogenase large subunit;


Pssm-ID: 182281  Cd Length: 597  Bit Score: 40.01  E-value: 2.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1583107286  22 MHGVLRLIVTLDGENVINCEPVLGYLHRGMEKIAENRTIIQYLPYVTRWDYLATMFTEAITVNAPEKLANIQVPKRASYI 101
Cdd:PRK10170   27 IEGHMRCEVNINDQNVITNAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDNANII 106

                          90
                  ....*....|....*
gi 1583107286 102 RVIMLELSRIASHLL 116
Cdd:PRK10170  107 RNIMLATLWCHDHLV 121
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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