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Conserved domains on  [gi|1238819772|ref|YP_009418986|]
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cytochrome b6-f complex subunit VI ycf7 (plastid) [Barringtonia fusicarpa]

Protein Classification

cytochrome b6-f complex subunit 6( domain architecture ID 10000093)

cytochrome b6-f complex subunit 6 is a component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
petL CHL00106
cytochrome b6/f complex subunit VI
 1-31 1.65e-05

cytochrome b6/f complex subunit VI


:

Pssm-ID: 177035  Cd Length: 31  Bit Score: 35.73  E-value: 1.65e-05
                         10        20        30
                 ....*....|....*....|....*....|.
gi 1238819772  1 MLTITSYFGFLLAALTITSALFIGLSKIRLI 31
Cdd:CHL00106   1 MLTITSYFGFLLAALTITSGLFIGLSKIRLI 31
 
Name Accession Description Interval E-value
petL CHL00106
cytochrome b6/f complex subunit VI
 1-31 1.65e-05

cytochrome b6/f complex subunit VI


Pssm-ID: 177035  Cd Length: 31  Bit Score: 35.73  E-value: 1.65e-05
                         10        20        30
                 ....*....|....*....|....*....|.
gi 1238819772  1 MLTITSYFGFLLAALTITSALFIGLSKIRLI 31
Cdd:CHL00106   1 MLTITSYFGFLLAALTITSGLFIGLSKIRLI 31
PetL pfam05115
Cytochrome B6-F complex subunit VI (PetL); This family consists of several Cytochrome B6-F ...
 1-31 2.45e-03

Cytochrome B6-F complex subunit VI (PetL); This family consists of several Cytochrome B6-F complex subunit VI (PetL) proteins found in several plant species. PetL is one of the small subunits which make up The cytochrome b(6)f complex. PetL is strictly required neither for the accumulation nor for the function of cytochrome b6f; in its absence, however, the complex becomes unstable in vivo in aging cells and labile in vitro. It has been suggested that the N-terminus of the protein is likely to lie in the thylakoid lumen.


Pssm-ID: 428313  Cd Length: 31  Bit Score: 30.19  E-value: 2.45e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 1238819772  1 MLTITSYFGFLLAALTITSALFIGLSKIRLI 31
Cdd:pfam05115  1 MSTIISYFGFLGGAFVIALGLFFGLRAIKLI 31
 
Name Accession Description Interval E-value
petL CHL00106
cytochrome b6/f complex subunit VI
 1-31 1.65e-05

cytochrome b6/f complex subunit VI


Pssm-ID: 177035  Cd Length: 31  Bit Score: 35.73  E-value: 1.65e-05
                         10        20        30
                 ....*....|....*....|....*....|.
gi 1238819772  1 MLTITSYFGFLLAALTITSALFIGLSKIRLI 31
Cdd:CHL00106   1 MLTITSYFGFLLAALTITSGLFIGLSKIRLI 31
PetL pfam05115
Cytochrome B6-F complex subunit VI (PetL); This family consists of several Cytochrome B6-F ...
 1-31 2.45e-03

Cytochrome B6-F complex subunit VI (PetL); This family consists of several Cytochrome B6-F complex subunit VI (PetL) proteins found in several plant species. PetL is one of the small subunits which make up The cytochrome b(6)f complex. PetL is strictly required neither for the accumulation nor for the function of cytochrome b6f; in its absence, however, the complex becomes unstable in vivo in aging cells and labile in vitro. It has been suggested that the N-terminus of the protein is likely to lie in the thylakoid lumen.


Pssm-ID: 428313  Cd Length: 31  Bit Score: 30.19  E-value: 2.45e-03
                         10        20        30
                 ....*....|....*....|....*....|.
gi 1238819772  1 MLTITSYFGFLLAALTITSALFIGLSKIRLI 31
Cdd:pfam05115  1 MSTIISYFGFLGGAFVIALGLFFGLRAIKLI 31
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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