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Conserved domains on  [gi|533207029|ref|YP_008475432|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Mesocottus haitej]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475913)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-327 0e+00

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 549.02  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   1 MNPYILSTLLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMAQHHHPRAVEATTKYFLAQATGAAMLLFASTTNAWL 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  81 VGQWDIQQMSHPLPVTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQIQTPNSTLLIALGLAS 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMVLIMQFSPSLTLLTLVTYLIMTFSMFLVFKLNDSTNINALAISWAKAPALT 240
Cdd:MTH00135 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 241 SLTPLILLSLGGLPPLTGFMPKWLILQELTKQDLATTATLAALSALLSLYFYLRLSYAMTLTMSPNNTAGTTPWRLPSLQ 320
Cdd:MTH00135 241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320


                 ....*..
gi 533207029 321 ITMPLAV 327
Cdd:MTH00135 321 LTLPLAI 327
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-327 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 549.02  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   1 MNPYILSTLLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMAQHHHPRAVEATTKYFLAQATGAAMLLFASTTNAWL 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  81 VGQWDIQQMSHPLPVTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQIQTPNSTLLIALGLAS 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMVLIMQFSPSLTLLTLVTYLIMTFSMFLVFKLNDSTNINALAISWAKAPALT 240
Cdd:MTH00135 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 241 SLTPLILLSLGGLPPLTGFMPKWLILQELTKQDLATTATLAALSALLSLYFYLRLSYAMTLTMSPNNTAGTTPWRLPSLQ 320
Cdd:MTH00135 241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320


                 ....*..
gi 533207029 321 ITMPLAV 327
Cdd:MTH00135 321 LTLPLAI 327
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-267 1.72e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 86.98  E-value: 1.72e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   23 SSHWLLAWMGLEMNTLAIIPLMA-QHHHPRAVEATTKYFLAQATGAAMLLFASTTNAWLVGQWDIQQMSHPLPVT----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   97 ------LVTLALALKVGLAPLHSWLPEVLQGLDLTTGLIL-STWQKLAPFAL-----LLQIQTPN-STLLIALGLASTLV 163
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLirrslLYLPSSPFiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  164 GGWGGLNQTQLRKILAYSSIAHLGWMVLIM----QFSPSLTLLTLVTYLIMTFSMFLVFKL-----NDSTNINALAISWA 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 533207029  235 KAPALTSLTPLILLSLGGLPPLTGFMPKWLILQ 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 4-299 4.03e-15

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 75.92  E-value: 4.03e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   4 YILstLLFGLgLGTTITFASSHWLLAWMGLEMNTLAIIPLMA-QHHHPRAVEATTKYFLAQATGAAMLLF--------AS 74
Cdd:COG1007  105 YAL--LLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTG 181

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  75 TTNAWLVGQWDIQQMSHPLP----VTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQI----- 145
Cdd:COG1007  182 SLNLAGIAAALAAGGANSPLlllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveaf 261

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 146 ---QTPNSTLLIALGLASTLVGGWGGLNQTQLRKILAYSSIAHLGWMVLIM----QFSPSLTLLTLVTYLIMTFSMFLVF 218
Cdd:COG1007  262 pglAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVI 341

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 219 -----KLNDSTNINALAISWAKAPALT--------SLT--PlillslgglpPLTGFMPKWLILQELTKQDLATTATLAAL 283
Cdd:COG1007  342 lllsrKGGEAEEIEDLAGLARRSPLLAlamtifllSLAgiP----------PTAGFFGKFYVFSAAVEAGLYWLAVIAVL 411

                        330
                 ....*....|....*.
gi 533207029 284 SALLSLYFYLRLSYAM 299
Cdd:COG1007  412 NSVISAYYYLRVVKAM 427
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-299 3.59e-13

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 69.98  E-value: 3.59e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   15 LGTTITFASSHWLLAWMGLEMNTLAIIPLMA-QHHHPRAVEATTKYFLAQATGAAMLLFASTTNAWLVGQWDIQQMSHPL 93
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   94 P------------VTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQI--------QTPNSTLL 153
Cdd:TIGR01770 193 SngmlnisllllgIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgfSEAWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  154 IALGLASTLVGGWGGLNQTQLRKILAYSSIAHLGW----MVLIMQFSPSLTLLTLVTYLIMTFSMFLVF------KLNDS 223
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiligLLAGTLEGIKAVLFYIFIYALMSLGAFGVLsllrsyKDEWI 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 533207029  224 TNINALAISWAKAPALTSLTPLILLSLGGLPPLTGFMPKWLILQELTKQDLATTATLAALSALLSLYFYLRLSYAM 299
Cdd:TIGR01770 353 EYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVM 428
 
Name Accession Description Interval E-value
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 1-327 0e+00

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 549.02  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   1 MNPYILSTLLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMAQHHHPRAVEATTKYFLAQATGAAMLLFASTTNAWL 80
Cdd:MTH00135   1 MNPYVLTILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  81 VGQWDIQQMSHPLPVTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQIQTPNSTLLIALGLAS 160
Cdd:MTH00135  81 TGQWDIQQMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPTNPTLLITLGLTS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMVLIMQFSPSLTLLTLVTYLIMTFSMFLVFKLNDSTNINALAISWAKAPALT 240
Cdd:MTH00135 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 241 SLTPLILLSLGGLPPLTGFMPKWLILQELTKQDLATTATLAALSALLSLYFYLRLSYAMTLTMSPNNTAGTTPWRLPSLQ 320
Cdd:MTH00135 241 ALTPLILLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQ 320


                 ....*..
gi 533207029 321 ITMPLAV 327
Cdd:MTH00135 321 LTLPLAI 327
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 1-327 1.49e-133

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 384.27  E-value: 1.49e-133
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   1 MNPYILSTLLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMAQHHHPRAVEATTKYFLAQATGAAMLLFASTTNAWL 80
Cdd:MTH00070   1 MSPYALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  81 VGQWDIQQMSHPLPVTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQI-QTPNSTLLIALGLA 159
Cdd:MTH00070  81 TGEWTIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQIsHLLNSNLLIIMGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMVLIMQFSPSLTLLTLVTYLIMTFSMFLVFKLNDSTNINALAISWAKAPAL 239
Cdd:MTH00070 161 STLIGGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 240 TSLTPLILLSLGGLPPLTGFMPKWLILQELTKQDLATTATLAALSALLSLYFYLRLSYAMTLTMSPNNTAGTTPWRLpSL 319
Cdd:MTH00070 241 TSMMMLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRF-KN 319


                 ....*...
gi 533207029 320 QITMPLAV 327
Cdd:MTH00070 320 KTNNLLSL 327
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-324 1.42e-115

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 338.72  E-value: 1.42e-115
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   1 MNPYILSTLLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMAQHHHPRAVEATTKYFLAQATGAAMLLFASTTNAWL 80
Cdd:MTH00112   1 MNPHAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWN 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  81 VGQWDIQQMSHPLPVTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQI-QTPNSTLLIALGLA 159
Cdd:MTH00112  81 TGQWDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTsNSLNPTLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMVLIMQFSPSLTLLTLVTYLIMTFSMFLVFKLNDSTNINALAISWAKAPAL 239
Cdd:MTH00112 161 STLIGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 240 TSLTPLILLSLGGLPPLTGFMPKWLILQELTKQDLATTATLAALSALLSLYFYLRLSYAMTLTMSPNNTAGTTPWRLPSL 319
Cdd:MTH00112 241 NTTLMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPK 320


                 ....*
gi 533207029 320 QITMP 324
Cdd:MTH00112 321 KNTLT 325
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 1-308 4.27e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 332.20  E-value: 4.27e-113
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   1 MNPYILSTLLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMAQHHHPRAVEATTKYFLAQATGAAMLLFASTTNAWL 80
Cdd:MTH00105   1 MNPLILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  81 VGQWDIQQMSHPLPVTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQI-QTPNSTLLIALGLA 159
Cdd:MTH00105  81 SGQWTITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQIsPSINPNLLLTLAIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMVLIMQFSPSLTLLTLVTYLIMTFSMFLVFKLNDSTNINALAISWAKAPAL 239
Cdd:MTH00105 161 SILIGGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLM 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 533207029 240 TSLTPLILLSLGGLPPLTGFMPKWLILQELTKQDLATTATLAALSALLSLYFYLRLSYAMTLTMSP--NNT 308
Cdd:MTH00105 241 TSLILLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFPstNNM 311
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 1-319 6.93e-103

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 306.51  E-value: 6.93e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   1 MNPYILSTLLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMAQHHHPRAVEATTKYFLAQATGAAMLLFASTTNAWL 80
Cdd:MTH00200   1 MSPLILPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWT 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  81 VGQWDIQQMSHPLPVTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQIQT-PNSTLLIALGLA 159
Cdd:MTH00200  81 SGQWGISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPaLNSNILLLLGLL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMVLIMQFSPSLTLLTLVTYLIMTFSMFLVFKLNDSTNINALAISWAKAPAL 239
Cdd:MTH00200 161 SVLVGGWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPIL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 240 TSLTPLILLSLGGLPPLTGFMPKWLILQELTKQDLATTATLAALSALLSLYFYLRLSYAMTLTMSPNNTAGTTPWRLPSL 319
Cdd:MTH00200 241 SMLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSN 320
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 1-315 6.72e-82

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 252.93  E-value: 6.72e-82
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   1 MNPYILSTLLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMAQHHHPRAVEATTKYFLAQATGAAMLLFASTTNAWL 80
Cdd:MTH00041   1 MNRNVLIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWL 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  81 VGQWDIQQMSHPLPVTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQI-QTPNSTLLIALGLA 159
Cdd:MTH00041  81 SGSWSINGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISIsNLLNSNILILCGIL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 160 STLVGGWGGLNQTQLRKILAYSSIAHLGWMVLIMQFSPSLTLLTLVTYLIMTFSMFLVFKLNDSTNINALAISWAKAPAL 239
Cdd:MTH00041 161 SVLVGGWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPIS 240

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 533207029 240 TSLTPLILLSLGGLPPLTGFMPKWLILQELTKQDLATTATLAALSALLSLYFYLRLSYAMTLTMSPNNTAGTTPWR 315
Cdd:MTH00041 241 AFLFILSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWR 316
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-308 2.15e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 173.47  E-value: 2.15e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   1 MNPYILSTLLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMAQHHHPRAVEATTKYFLAQATGAAMLLFASTTNAWL 80
Cdd:MTH00160   2 MMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNMLN 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  81 vgqwdiQQMSHPLPVTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQIQTPNSTLLIALglAS 160
Cdd:MTH00160  82 ------LMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLINNNFIIIIII--LS 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMVLIMQFSPSLTLLTLVTYLIMTFSMFLVFKLNDSTNINALAISWAKAPALT 240
Cdd:MTH00160 154 AIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIK 233

                        250       260       270       280       290       300
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 533207029 241 SLTPLILLSLGGLPPLTGFMPKWLILQELTKQDLATTATLAALSALLSLYFYLRLSYAMTLTMSPNNT 308
Cdd:MTH00160 234 FLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNK 301
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 10-319 3.78e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 159.67  E-value: 3.78e-46
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  10 LFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMAQHHHPRAVEATTKYFLAQATGAAMLLFASTTNAWLVGQWDIqqm 89
Cdd:MTH00144  10 LFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSWFS--- 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  90 shplpVTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQIQTPNS--TLLIALGLASTLVGGWG 167
Cdd:MTH00144  87 -----MSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWlaYLLCVISVLSALVGSIG 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 168 GLNQTQLRKILAYSSIAHLGWMVLIMQFSPSLTLLTLVTYLIMTFSMFLVFKLNDSTNINALaiSWAKAPALTSLTPLIL 247
Cdd:MTH00144 162 GLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDL--GSLKPSYKTGLSIISL 239

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 533207029 248 LSLGG-LPPLTGFMPKWLILQELTKQDLATTATLAALSALLSLYFYLRLSYAMTLTMSPNNTAGTTPWRLPSL 319
Cdd:MTH00144 240 LLSLGgLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSI 312
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 15-326 4.96e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 151.47  E-value: 4.96e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  15 LGTTITFASSHWLLAWMGLEMNTLAIIPLMAQHHHPRAVEATTKYFLAQATGAAMLLFASTTnawlvgQWDIQQMSHPLP 94
Cdd:MTH00011  17 LGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTM------MWSFPSLLKNIT 90

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  95 VTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQIQTPNSTLLI-ALGLASTLVGGWGGLNQTQ 173
Cdd:MTH00011  91 ALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMtSMAAMSALAGGLGGMNQTQ 170

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 174 LRKILAYSSIAHLGWMVLIMQFSPSLTLLTLVTYLIMTFSMFLVFKLNDSTNINALAISWAKAPALTSLTPLILLSLGGL 253
Cdd:MTH00011 171 LRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLLSLGGL 250

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 533207029 254 PPLTGFMPKWLILQELTKQDLATTATLAALSALLSLYFYLRLSYAMTlTMSPNNTAGTTPWRLPSLQITMPLA 326
Cdd:MTH00011 251 PPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFM-YLSPTFSSLKSAPYEPKTKILISMC 322
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 9-297 3.39e-38

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 138.65  E-value: 3.39e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   9 LLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMAQHHHPRAVEATTKYFLAQATGAAMLLF---ASTTNAWLvgqwd 85
Cdd:MTH00197   3 FLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMggsLSFSNLYL----- 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  86 iqqmsHPLPVTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQIqTPNSTLLIALGLASTLVGG 165
Cdd:MTH00197  78 -----SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFN-SSSFMGLLICSVLSSLIGG 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 166 WGGLNQTQLRKILAYSSIAHLGWMVLIMQFSPSLTLLTLVTYLIMTFSMFLVFKLNDSTNINALAISWAKAPALTSLTPL 245
Cdd:MTH00197 152 IGGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGL 231

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|..
gi 533207029 246 ILLSLGGLPPLTGFMPKWLILQELTKQDLATTATLAALSALLSLYFYLRLSY 297
Cdd:MTH00197 232 SFLSLGGLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAY 283
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 15-191 3.40e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 95.87  E-value: 3.40e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  15 LGTTITFASSHWLLAWMGLEMNTLAIIPLMAQHHHP-RAVEATTKYFLAQATGAAMLLFA-------------STTNAWL 80
Cdd:MTH00196   4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSgYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINLVL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  81 VGQWDIQQMSHPLPVTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQIQTPNSTLLIAlGLAS 160
Cdd:MTH00196  84 NSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIG-GLFS 162

                        170       180       190
                 ....*....|....*....|....*....|.
gi 533207029 161 TLVGGWGGLNQTQLRKILAYSSIAHLGWMVL 191
Cdd:MTH00196 163 LFVGAIGALNQTKIKRLLAYSGIGHMGFVLW 193
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 13-266 1.14e-19

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 89.69  E-value: 1.14e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  13 LGLGTTITFASSHWLLAWMGLEMNTLAIIPLMA-QHHHPRAVEATTKYFLAQATGAAMLLFASTTNAWLVGQWDIQQMSH 91
Cdd:MTH00199 106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIQGINS 185

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  92 PLPV----TLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQIqTPNSTLLIALGLASTLVGGWG 167
Cdd:MTH00199 186 ILTGdvgkILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQI-GPVTNVVLICAVLSIIYGAIG 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 168 GLNQTQLRKILAYSSIAHLG---WMVLIMQF-SPSLTLLTLVTYLIMT---FSMFLVFKLNDSTNINALAISwAKAPALT 240
Cdd:MTH00199 265 ALNQTKIKRLLAYSGIGHMGfilFGVAIGSFeSIQASLIYMIIYVIMSicsFSIILSLKLTKGLIVEVSGLS-RKNPVIA 343

                        250       260
                 ....*....|....*....|....*.
gi 533207029 241 SLTPLILLSLGGLPPLTGFMPKWLIL 266
Cdd:MTH00199 344 LTLALTFLSIAGIPPLAGFLSKWLIL 369
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 23-267 1.72e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 86.98  E-value: 1.72e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   23 SSHWLLAWMGLEMNTLAIIPLMA-QHHHPRAVEATTKYFLAQATGAAMLLFASTTNAWLVGQWDIQQMSHPLPVT----- 96
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGyWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGGlnssg 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   97 ------LVTLALALKVGLAPLHSWLPEVLQGLDLTTGLIL-STWQKLAPFAL-----LLQIQTPN-STLLIALGLASTLV 163
Cdd:pfam00361  81 llllflLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLirrslLYLPSSPFiQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  164 GGWGGLNQTQLRKILAYSSIAHLGWMVLIM----QFSPSLTLLTLVTYLIMTFSMFLVFKL-----NDSTNINALAISWA 234
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 533207029  235 KAPALTSLTPLILLSLGGLPPLTGFMPKWLILQ 267
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 4-299 4.03e-15

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 75.92  E-value: 4.03e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   4 YILstLLFGLgLGTTITFASSHWLLAWMGLEMNTLAIIPLMA-QHHHPRAVEATTKYFLAQATGAAMLLF--------AS 74
Cdd:COG1007  105 YAL--LLFAT-LGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgisllygaTG 181

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  75 TTNAWLVGQWDIQQMSHPLP----VTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQI----- 145
Cdd:COG1007  182 SLNLAGIAAALAAGGANSPLlllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALLRLlveaf 261

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 146 ---QTPNSTLLIALGLASTLVGGWGGLNQTQLRKILAYSSIAHLGWMVLIM----QFSPSLTLLTLVTYLIMTFSMFLVF 218
Cdd:COG1007  262 pglAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLaagtPLGVSAALFYLLAYLFMNLGAFAVI 341

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 219 -----KLNDSTNINALAISWAKAPALT--------SLT--PlillslgglpPLTGFMPKWLILQELTKQDLATTATLAAL 283
Cdd:COG1007  342 lllsrKGGEAEEIEDLAGLARRSPLLAlamtifllSLAgiP----------PTAGFFGKFYVFSAAVEAGLYWLAVIAVL 411

                        330
                 ....*....|....*.
gi 533207029 284 SALLSLYFYLRLSYAM 299
Cdd:COG1007  412 NSVISAYYYLRVVKAM 427
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 9-191 3.54e-14

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 73.35  E-value: 3.54e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   9 LLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMAQHHHPRAV---------EATTKYFLAQATGAAMLLFASTTNAW 79
Cdd:MTH00198 193 LVLIVGLGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFG 272

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  80 LVGQ--------------WDIQQMSHPLPVTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQI 145
Cdd:MTH00198 273 FTGNegmlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSL 352

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 533207029 146 qTPNSTLLIALGLASTLVGGWGGLNQTQLRKILAYSSIAHLGWMVL 191
Cdd:MTH00198 353 -VITSKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILI 397
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 15-299 3.59e-13

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 69.98  E-value: 3.59e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   15 LGTTITFASSHWLLAWMGLEMNTLAIIPLMA-QHHHPRAVEATTKYFLAQATGAAMLLFASTTNAWLVGQWDIQQMSHPL 93
Cdd:TIGR01770 113 LGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLFL 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   94 P------------VTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQI--------QTPNSTLL 153
Cdd:TIGR01770 193 SngmlnisllllgIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAIFAVFLRLflyilfgfSEAWQIFL 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  154 IALGLASTLVGGWGGLNQTQLRKILAYSSIAHLGW----MVLIMQFSPSLTLLTLVTYLIMTFSMFLVF------KLNDS 223
Cdd:TIGR01770 273 AIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYiligLLAGTLEGIKAVLFYIFIYALMSLGAFGVLsllrsyKDEWI 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 533207029  224 TNINALAISWAKAPALTSLTPLILLSLGGLPPLTGFMPKWLILQELTKQDLATTATLAALSALLSLYFYLRLSYAM 299
Cdd:TIGR01770 353 EYISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVVKVM 428
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 2-267 4.47e-13

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 69.79  E-value: 4.47e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   2 NPYILSTLLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMAQHHHPRAVEATTKYFLAQATGAAMLLFASTTNAWLV 81
Cdd:COG0651  105 RGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGAT 184

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  82 GQWDIQQMSHPLP----------VTLVTLALALKVGLAPLHSWLPE-----------VLQGLDLTTGL--ILSTWQKLAP 138
Cdd:COG0651  185 GTLNMADLAARLAeldpglllaaFALLLVGFGIKAALFPLHFWLPDaypaapspvsaLLSGLLTKVGVyaILRVLTLLFG 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 139 FALLLQIQTpnstLLIALGLASTLVGGWGGLNQTQLRKILAYSSIAHLGWMVL-IMQFSPSLTLLTLVTYL---IMTFSM 214
Cdd:COG0651  265 ADPALFLGT----LLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLgLGLGTPLGLAGALFHLLnhaLAKALL 340

                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 533207029 215 FL----VFKLNDSTNINALAISWAKAPALTSLTPLILLSLGGLPPLTGFMPKWLILQ 267
Cdd:COG0651  341 FLaagaIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQ 397
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
9-299 1.85e-12

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 67.92  E-value: 1.85e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   9 LLFGLgLGTTITFASSHWLLAWMGLEMNTLAIIPLMAQH-HHPRAVEATTKYFLAQATGAAMLLF--------ASTTNAW 79
Cdd:PRK05777 109 VLFAL-LGMMVMVSANDLLTLFLGLELLSLPLYALAALRrDRRRSLEAAIKYFVLGALASGFLLYgmsllygaTGSLSFA 187

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  80 LVGQWDIQQMSHPLP----VTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQI--------QT 147
Cdd:PRK05777 188 GIAKALADGSGNSLLllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAVLLRLlvvafgglSE 267

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 148 PNSTLLIALGLASTLVGGWGGLNQTQLRKILAYSSIAHLGWMVLIM----QFSPSLTLLTLVTYLIMT---FSMFLVFKL 220
Cdd:PRK05777 268 DWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLaagtAEGYSAVLFYLLAYLFMTlgaFGVISLLRR 347

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 221 ND--STNINALA-ISWaKAPALTSLTPLILLSLGGLPPLTGFMPKWLILQELTKQDLATTATLAALSALLSLYFYLRLSY 297
Cdd:PRK05777 348 KGgeAESISDFAgLSK-RSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRVIK 426


                 ..
gi 533207029 298 AM 299
Cdd:PRK05777 427 LM 428
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 49-191 3.50e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 57.78  E-value: 3.50e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  49 HPRAVEATTKYFLAQATGAAMLLFASTTNAWLVGQW--DIQQ-MSHPLPVTLVTL-------ALALKVGLAPLHSWLPEV 118
Cdd:COG1008  156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAElAAAPLPLTAQLLlflaffiAFAVKVPMFPFHTWLPDA 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 119 LQ-----GLDLTTGLILstwqKLAPFALL---LQIqTPN-----STLLIALGLASTLVGGWGGLNQTQLRKILAYSSIAH 185
Cdd:COG1008  236 HVeaptaGSVLLAGVLL----KMGGYGLLrfaLPL-FPEasayfAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSH 310


                 ....*.
gi 533207029 186 LGWMVL 191
Cdd:COG1008  311 MGFVLL 316
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 28-191 1.13e-08

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 56.48  E-value: 1.13e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  28 LAWMGLEMNTLAIIPLMAQHHHPRAVEATTKYFLAQATGAAMLLFAS----------TTNAWLVGQW-DIQQMSHPLPVT 96
Cdd:PRK06458 132 LMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGDGEMAILWtELLKHASLLDPT 211

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  97 LVTLALAL-------KVGLAPLHSWLPE-----------VLQGLDLTTGL-ILSTWQKLAPFALLLQiqtPNSTLLIALG 157
Cdd:PRK06458 212 LMKLAFVFlligfgtKVGLFPMHAWLPDahseapspvsaLLSGVLLNVALyAVLRYYILIDAAIGSD---FPGRLLLIFG 288

                        170       180       190
                 ....*....|....*....|....*....|....
gi 533207029 158 LASTLVGGWGGLNQTQLRKILAYSSIAHLGWMVL 191
Cdd:PRK06458 289 LLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-191 5.51e-08

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 54.11  E-value: 5.51e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  33 LEMNTLAIIPLMAQHHHPRAVEATTKYFLAQATGAAMLLFASTTNAWLVGQWDIQQMSHPLP--------VTLVTLALAL 104
Cdd:PRK08375 135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVTGTLNMADLAGALAenptvvtaFGFVLLALAL 214

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 105 KVGLAPLHSWLPEVLQGLDLTTGLILS-TWQKLAPFALLLQIQT----------PNSTLLIALGLASTLVGGWGGLNQTQ 173
Cdd:PRK08375 215 KAAVFPLHTWLPRAYPAAPPVVTALLSgLVTKVAVYALIRIYFTvfggdfrfalGLGWLLAVLALLSMLVGSLAALGQDD 294

                        170
                 ....*....|....*...
gi 533207029 174 LRKILAYSSIAHLGWMVL 191
Cdd:PRK08375 295 VKRVLAYSTVSQMGYILL 312
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 50-191 6.67e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 53.79  E-value: 6.67e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   50 PRAVEATTKYFLAQATGAAMLLFASTTNAWLVGQ-WDIQQ-MSHPLPVTLVT-------LALALKVGLAPLHSWLPEV-L 119
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGtFDLLElLNLPLPFGVQTwlflaffIAFAVKVPLFPLHTWLPDAhV 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  120 QGLDLTTGLILSTWQKLAPFALL---LQIqTPN-----STLLIALGLASTLVGGWGGLNQTQLRKILAYSSIAHLGWMVL 191
Cdd:TIGR01972 232 EAPTAGSVILAGVLLKMGTYGFLrfnLPL-FPDaslyfAPVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLL 310
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 290-327 1.83e-07

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 47.25  E-value: 1.83e-07
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 533207029  290 YFYLRLSYAMTLTMSPNNTAGTTPWRLPSLQITMPLAV 327
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLLLPT 38
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
50-190 4.15e-07

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 51.43  E-value: 4.15e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  50 PRAVEATTKYFLAQATG-----AAMLLFASTTNAWLVGQWDIqqmSHPLPVTLVTLALALKVGLAPLHSWLPEVLQGLDL 124
Cdd:PRK12668 139 KAAVRAGFRYLLVHVLGgvlllAGILLHYAETGSFAFGAIAG---LGGTAAWLILIGFGVNAAFPPLHAWLPDAYPEATV 215

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 533207029 125 TTGLILSTW-QKLAPFALLLQIqtPNSTLLIALGLASTLVGGWGGLNQTQLRKILAYSSIAHLGWMV 190
Cdd:PRK12668 216 TGSVFLSAFtTKTAVYALARAF--PGTELLIYIGAAMAVYGVFFALLENDLRRLLSYHIVSQVGYMV 280
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 44-191 1.99e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 49.20  E-value: 1.99e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  44 MAQHHHPRAVEATTKYFLAQATGAAMLLFA--------STTN-----AWLVGQWDIQQMS---HPLPVTLVTLALAL--- 104
Cdd:PRK12667 154 AYYRDRGDAVEAAIKYALIGAVGTTLYFLAlaflyatfGTLNmadlsAKIRGLSFPLTGGlagNPPLALGVALALALwaf 233

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 105 --KVGLAPLHSWLPEV-----------LQGLDLTTG---------LILSTWQKLAPFALLLQIqtpnstLLIALGLASTL 162
Cdd:PRK12667 234 tiKAAIFPNHFWLPDAhpaapspvsamLSGLVVNVGayaiirflyTIFGISPSLIDFRAALSP------ILIILGAVSAI 307

                        170       180
                 ....*....|....*....|....*....
gi 533207029 163 VGGWGGLNQTQLRKILAYSSIAHLGWMVL 191
Cdd:PRK12667 308 IGALMMVVQKDVKRLLAYSTISHMGYIFM 336
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
18-191 3.41e-06

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 48.54  E-value: 3.41e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  18 TITFASSHWLL---AWM--GLEMNTLaiipLMAQHHHPRAVEATTKYFLAQATGAAMLLFASTTNAWLVGQWDIQQ---- 88
Cdd:PRK08168 114 HLLVLSDHLLVliaAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSAlwah 189

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  89 -----MSHPLPVTLVTLALA--LKVGLAPLHSWLPEVLQGLD-----LTTGLILSTWQKLAPFALLLQIQTPNSTLLIAL 156
Cdd:PRK08168 190 laaqgASPSLQAAALLLVLAviLKTAQLPVHGWLIQVMEAPTpvsalLHAGVVNLGGFVLIRFAPLLEQAPPARWLLVLV 269

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 533207029 157 GLASTLVGGWGGLNQTQLRKILAYSSIAHLGWMVL 191
Cdd:PRK08168 270 GLATAVLAGLVMLTRISIKVRLAWSTVAQMGFMLL 304
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-191 4.42e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 48.17  E-value: 4.42e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  33 LEMNTLAIIPLMAQHHH-PRAVEATTKYFLAQATGAAMLLFASttnAWLVGQWDIQQMSH--------PLPVTLVTLA-- 101
Cdd:PRK08376 150 LEIMSIASYALVAFRNDtWEAIEAGIKYMFVGSLASSMVLLGI---ALLYGQYGTLNMAYlavkmsenPTVVAKIALAlf 226

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 102 ---LALKVGLAPLHSWLPEVLQGL--DLTTGLILSTWQKL-APFALLLQIQTPNSTL------LIALGLASTLVGGWGGL 169
Cdd:PRK08376 227 iagLAMKSGAVPVHMWLPDAYPAApsSISAMLLVIKQAGLyALARVLFSIYGPAINLatvgwvIIILGCLTMFVGVAMAV 306

                        170       180
                 ....*....|....*....|..
gi 533207029 170 NQTQLRKILAYSSIAHLGWMVL 191
Cdd:PRK08376 307 VQKDVKRLLAYHSVSQIGYMLL 328
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 50-191 6.04e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 47.89  E-value: 6.04e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  50 PRAVEATTKYFLAQATGAAMLLFA----STTNAWLVGQWDIQQ-MSHPLPVTLVTL-------ALALKVGLAPLHSWLPE 117
Cdd:PRK05846 157 KNRIYAATKFFLYTLLGSLLMLVAiiylVVVYYNATGTFDIADlLNLPLPPGVQYWlflaffiAFAVKMPMFPLHTWLPD 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 118 VLQ-----GLDLTTGLILstwqKLAPFALL---LQIqTPN-----STLLIALGLASTLVGGWGGLNQTQLRKILAYSSIA 184
Cdd:PRK05846 237 AHVqaptaGSVLLAGILL----KMGAYGLLrfsLPL-FPDashefAPIIITLGVIAIIYGALVALAQTDIKKLIAYSSIS 311


                 ....*..
gi 533207029 185 HLGWMVL 191
Cdd:PRK05846 312 HMGFVTL 318
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
9-191 9.68e-06

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 47.00  E-value: 9.68e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029   9 LLFGLGLGTTITFASSHWLLAWMGLEMNTLAIIPLMAQHHHPRAVEATTKYFLAQATGAAMLLFASTTNAWLVGQWDI-- 86
Cdd:PRK06473 112 LLLLLNAGVSGAFLAQDLLLFFLFYELELIPLYLLIAIWGGQRRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFdy 191

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  87 -QQMSHPLPVT-------LVTLALALKVGLAPLHSWLPE-----------VLQG--LDLTT--------GLILSTWQKLA 137
Cdd:PRK06473 192 ePLRSHTLPLStqllllaPILVGFGIKIPLVPFHTWLPDahveastpvsvLLAGvlLKLGTygllrfgvGLFPEAWVYLA 271

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 533207029 138 PFalllqiqtpnstlLIALGLASTLVGGWGGLNQTQLRKILAYSSIAHLGWMVL 191
Cdd:PRK06473 272 PW-------------LATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILL 312
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 47-191 1.05e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 47.07  E-value: 1.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  47 HHHPRAVEATTKYFLAQATGAAMLLFASTTNAWLVGQWDIQQM----SHPLPVTLVTLALAL-------KVGLAPLHSWL 115
Cdd:COG1009  155 YEKPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELlaaaPTILSSPLLTLILLLlllgafgKSAQFPLHFWL 234

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 116 PEVLQG-----------LDLTTGLILstwqkLAPFALLLQIQTPNSTLLIALGLASTLVGGWGGLNQTQLRKILAYSSIA 184
Cdd:COG1009  235 PDAMEGptpvsallhaaTMVKAGVYL-----LARLSPLFALSPVWLTVVAIIGAITALFAALIALAQTDIKRVLAYSTVS 309


                 ....*..
gi 533207029 185 HLGWMVL 191
Cdd:COG1009  310 QLGYMFL 316
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 17-191 2.11e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 46.29  E-value: 2.11e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  17 TTITFASSHWLLAWMGLEMNTLAIIPLMAQHHHPRAVEATTKYFLAQATgaAML--------LFASTTNAWLVGQWDIQQ 88
Cdd:PRK08676 115 ITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIAST--AMIfafiglifLFSLTRQALGTGTLNWTE 192

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  89 MSHPLPV----------TLVTLALALKVGLAPLHSWLPE-----------VLQGLDLTTGLilstWQKLAPFALLLQIQT 147
Cdd:PRK08676 193 LAAHASLlspsvlgasfLFIFIGFLAKSGLVPFHTWLPAayakapsvvsaLLSGTVLNIGI----YGILRLSALLRQSGA 268

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 533207029 148 PN--STLLIALGLASTLVGGWGGLNQTQLRKILAYSSIAHLGWMVL 191
Cdd:PRK08676 269 AEqfSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLL 314
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 19-191 2.79e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 45.71  E-value: 2.79e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  19 ITFASSHWLLAWMGLEMNTLAIIPLMAQHHHPRAVEATTKYfLAQATGA-------AMLLFASTTNAWLVGQwdiqQMSH 91
Cdd:PRK07234 109 AAFVCADLISLYVALEVLSIATFLLVAYPRTDRAIWVGLRY-LFYSNVAmlfyligAVLVYQANGTFAFSGL----ATAD 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  92 PLPVTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILS-TWQKLAPFALL-LQIQTPNSTLLIAL-GLASTLVGGWGG 168
Cdd:PRK07234 184 PEAFALIALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSgVVVKAGVFPLVrCALDVPGLDLIVRIfGVGTALLGVLFA 263

                        170       180
                 ....*....|....*....|...
gi 533207029 169 LNQTQLRKILAYSSIAHLGWMVL 191
Cdd:PRK07234 264 LLEKDLKRMLAFSTISQLGFILA 286
ndhB CHL00049
NADH dehydrogenase subunit 2
 51-262 2.10e-04

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 43.07  E-value: 2.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  51 RAVEATTKYFLAQATGAAMLLFASTtnaWLVGQ-------WDI------QQMSHPLPV----TLVTLALALKVGLAPLHS 113
Cdd:CHL00049 159 RSNEATMKYLLMGGASSSILVYGFS---WLYGLsggeielQEIvnglinTQMYNSPGIsialIFITVGIGFKLSLAPFHQ 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 114 WLPEVLQGLDLTTGLILSTWQKLAPFAL---LLQIQTPNST-----LLIALGLASTLVGGWGGLNQTQLRKILAYSSIAH 185
Cdd:CHL00049 236 WTPDVYEGSPTPVVAFLSVTSKVAASALatrIFDIPFYFSSnewhlLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQ 315

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 186 LGWMV--LIMQFSPSLTLLTLVTYLIM------TFSMFLVFKLNDST-NINALAISWAKAPALTSLTPLILLSLGGLPPL 256
Cdd:CHL00049 316 IGYVIigIIVGDSNDGYASMITYMLFYifmnlgTFACIVLFGLRTGTdNIRDYAGLYTKDPFLALSLALCLLSLGGIPPL 395


                 ....*.
gi 533207029 257 TGFMPK 262
Cdd:CHL00049 396 AGFFGK 401
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 27-187 2.25e-04

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 42.95  E-value: 2.25e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  27 LLAWmglEMNTLAIIPL-MAQHHHPRAVEATTKYFLAQATGAAMLLFASTTNAWLVGQWDIQQMS-HPLPVTLVTLALAL 104
Cdd:PRK06521 139 LVAW---ETMSLSSWFLvIANHREAEIRRAGFLYLLMAHAGALAILLAFGLLARESGSYDFAAMRaAHLSPFWASLVFLL 215

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 105 -------KVGLAPLHSWLPE-----------VLQGLDLTTGL--ILSTwqklaPFALLLQIQTPNSTLLIALGLASTLVG 164
Cdd:PRK06521 216 alfgfgaKAGLVPLHVWLPRahpaapshvsaLMSGVMLKVAIygILRV-----VFDLLGAPGWWWGVLVLALGAISAVLG 290

                        170       180
                 ....*....|....*....|...
gi 533207029 165 GWGGLNQTQLRKILAYSSIAHLG 187
Cdd:PRK06521 291 VLYALAEHDLKRLLAYSTIENIG 313
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 111-193 8.51e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 41.10  E-value: 8.51e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 111 LHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQI-----QTPNSTLLIAL-GLASTLVGGWGGLNQTQLRKILAYSSIA 184
Cdd:MTH00032 244 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSfplfeKAPLTLLIITIfGALTAFFAATVGLVQNDLKKVIAYSTCS 323


                 ....*....
gi 533207029 185 HLGWMVLIM 193
Cdd:MTH00032 324 QLGYMVLII 332
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
50-262 9.34e-04

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 40.80  E-value: 9.34e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  50 PRAVEATTKYFLAQATGAAMLLFAST---------TNAWLVGQWDIQQMSHPLPVTLVTLA--LALKVGLAPLHSWLPEV 118
Cdd:PRK02504 157 PRSNEAALKYLLIGAASSAIFLYGSSllyglsggsTQLSAIALALITSPSLGLALALVFVIagIAFKISAVPFHQWTPDV 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 119 LQGLDLTTGLILSTWQKLAPFALLLQIQT---PNST-----LLIALGLASTLVGGWGGLNQTQLRKILAYSSIAHLGW-- 188
Cdd:PRK02504 237 YEGSPTPVVAFLSVGSKAAGFALAIRLLVtafPSFDeqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFvm 316

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 189 --MVLIMQFSPSLTLLTLVTYLIMT---FSMFLVFKLNDSTN-INALAISWAKAPALTSLTPLILLSLGGLPPLTGFMPK 262
Cdd:PRK02504 317 igLVAGTEAGYASMVFYLLAYLFMNlgaFACVILFSLRTGTDqISDYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
52-193 1.30e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 40.78  E-value: 1.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  52 AVEATTKYFLAQATGAAMLLFASTTNAWLVGQWDIQQM---------SHPLPVTLVTLaLALKVGLAP--------LHSW 114
Cdd:PRK07376 171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIadrlselvsSGAVSGWLALL-LCILVFLGPmaksaqfpLHVW 249

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 115 LPEVLQGLDLTTGLILSTWQKLAPFALLLQI-----QTPNSTLLIAL-GLASTLVGGWGGLNQTQLRKILAYSSIAHLGW 188
Cdd:PRK07376 250 LPDAMEGPTPISALIHAATMVAAGVFLVARMypvfeQFPAVMTVIAWtGAITAFLGASIALTQNDIKKGLAYSTISQLGY 329


                 ....*
gi 533207029 189 MVLIM 193
Cdd:PRK07376 330 MVMAM 334
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 91-192 1.46e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 40.68  E-value: 1.46e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  91 HPLPVTLVTLALAL-------KVGLAPLHSWLPE-----------------VLQGLDLTTglilstwqKLAP-FALLlqi 145
Cdd:PRK12644 195 DPPTGPAVSVAVVLilvgalsKSAIVPFHFWLPGamaaptpvsaylhaaamVKAGIYLVA--------RLAPgFADV--- 263

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 533207029 146 qTPNSTLLIALGLASTLVGGWGGLNQTQLRKILAYSSIAHLGWMVLI 192
Cdd:PRK12644 264 -PVWRPTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVL 309
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 98-187 1.90e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 39.90  E-value: 1.90e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  98 VTLALALKVGLAPLHSWLPEV-----LQGLDLTTGLILstwqKLAPFAL------LLQIQTPN-STLLIALGLASTLVGG 165
Cdd:MTH00226 236 IFLAMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILL----KLGGYGLvrlswpILPLGAQNlAPAVIAMGIVGIVYGS 311

                         90       100
                 ....*....|....*....|..
gi 533207029 166 WGGLNQTQLRKILAYSSIAHLG 187
Cdd:MTH00226 312 FATCRQIDVKRLVAYSSVAHMG 333
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
95-191 2.22e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 39.70  E-value: 2.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  95 VTLVTLALALKVGLAPLHSWLPEVLQGLDLTTGLILS-TWQKLAPFALL---LQIqTPNSTLLIALGLA-----STLVGG 165
Cdd:PRK07363 208 LTGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGgVLAKLGTYGLLrfgLQL-FPQTWSLVAPGLAiigtiSVIYGA 286

                         90       100
                 ....*....|....*....|....*.
gi 533207029 166 WGGLNQTQLRKILAYSSIAHLGWMVL 191
Cdd:PRK07363 287 LSAIAQKDIKRMVAYSSIGHMGYILV 312
PRK12650 PRK12650
DUF4040 family protein;
152-190 3.57e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 39.26  E-value: 3.57e-03
                         10        20        30
                 ....*....|....*....|....*....|....*....
gi 533207029 152 LLIALGLASTLVGGWGGLNQTQLRKILAYSSIAHLGWMV 190
Cdd:PRK12650 274 LLIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIV 312
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 111-196 5.44e-03

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 38.52  E-value: 5.44e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 111 LHSWLPEVLQGLDLTTGLILSTWQKLAPFALLLQI-----QTPNSTLLIAL-GLASTLVGGWGGLNQTQLRKILAYSSIA 184
Cdd:MTH00020 229 LHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSsplfeQAPLALIIVTIvGSLTVFFAATVGLVQNDLKKVIAYSTCS 308

                         90
                 ....*....|..
gi 533207029 185 HLGWMVLIMQFS 196
Cdd:MTH00020 309 QLGYMVVACGLS 320
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 100-191 7.30e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 38.11  E-value: 7.30e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 100 LALALKVGLAPLHSWLPE-----------VLQGLDLTTG---LILSTWqklapfALLLQIQTPNSTLLIALGLASTLVGG 165
Cdd:MTH00217 214 LSLAIKIPKIPFHIWLPQahveapvagsvILAGVLLKLGgygFIRFSW------PLLPEASEYFSPLIQTLSLLAIIYGS 287

                         90       100
                 ....*....|....*....|....*.
gi 533207029 166 WGGLNQTQLRKILAYSSIAHLGWMVL 191
Cdd:MTH00217 288 LTTCRQVDLKRIIAYSSVAHMGLVTL 313
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 33-266 7.40e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.18  E-value: 7.40e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  33 LEMNTLAIIPLMAQHHHPRAVEATTKYFLAQATGAAMLLFA-----STTNAWLVGqwDIQQMSHPLPVT--------LVT 99
Cdd:PRK12662 139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDLPTNraiqigvlFIM 216

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 100 LALALKVGLAPLHSWLPEVLQGLDLTTGLILS-TWQKLAPF-----------ALLLQIQTPNSTLLIALGLASTLVGGWG 167
Cdd:PRK12662 217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSgTSTKVMIYliirivydvfkANFVFTTLPFNNVFMILAALAIVFGSVL 296

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 168 GLNQTQLRKILAYSSIAHLGWMVLIMQFSPSLTLLTLVTYLI----MTFSMFLV-----FKLnDSTNINALAISWAKAPA 238
Cdd:PRK12662 297 AILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsiVKSALFMVsgsisYHF-GTTKLEDCLNLWKSMPK 375

                        250       260
                 ....*....|....*....|....*...
gi 533207029 239 LTSLTPLILLSLGGLPPLTGFMPKWLIL 266
Cdd:PRK12662 376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 48-196 7.98e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 38.27  E-value: 7.98e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029  48 HHPRAVEATTKYFLAQATGAAMLLFASTTNAWLVGQWDIQQMS---------HPLPVTLVTLAL-----ALKVGLAPLHS 113
Cdd:PRK12649 156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILqdselieniKGHPLFLITLILifigaAAKSAQGPFYI 235

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 533207029 114 WLPEVLQGLDLTTGLILSTWQKLAPFALLLQIQ-----TPNSTLLIA-LGLASTLVGGWGGLNQTQLRKILAYSSIAHLG 187
Cdd:PRK12649 236 WLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHpifsgTEAWFILVSgTGMITMVLAGFLAFRQTDIKAILAYSTISQLA 315


                 ....*....
gi 533207029 188 WMVLIMQFS 196
Cdd:PRK12649 316 YLMTMYGYT 324
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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