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Conserved domains on  [gi|386800747|ref|YP_006303404|]
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cytochrome b (mitochondrion) [Scartelaos histophorus]

Protein Classification

cytochrome b( domain architecture ID 11475912)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


:

Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 786.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747   1 MTSLRKSHPLLKIANDALVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  81 NMHANGASFFFICIYLHVGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVILAVTVLHLLFLHETGSNNPVGLNSDADKIPFHPYFSYKDLLGFAIMLLALT 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 241 SLALFSPNYLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQRSLTFRPL 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 386800747 321 SQLIFWTLVADVIILTWIGGMPVEDPYIIIGQVASFVYFFIFLGLFPLAGLLENKLLQ 378
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 786.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747   1 MTSLRKSHPLLKIANDALVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  81 NMHANGASFFFICIYLHVGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVILAVTVLHLLFLHETGSNNPVGLNSDADKIPFHPYFSYKDLLGFAIMLLALT 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 241 SLALFSPNYLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQRSLTFRPL 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 386800747 321 SQLIFWTLVADVIILTWIGGMPVEDPYIIIGQVASFVYFFIFLGLFPLAGLLENKLLQ 378
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
22-373 7.11e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 375.28  E-value: 7.11e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  22 PAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIRNMHANGASFFFICIYLHVGRG 101
Cdd:COG1290   31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 102 LYYGSylYKE----TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTR 177
Cdd:COG1290  111 FFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNR 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 178 FFAF-HFLFPFVILAVTVLHLLFLHETGSNNPVG----LNSDADKIPFHPYFSYKDLLGFAIMLLALTSLALFSPNylGD 252
Cdd:COG1290  189 FFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NP 266

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 253 PDNFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLASILVLMLVPFLHTSKQRSLTFRPLSQLIFWTLVA 330
Cdd:COG1290  267 PPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIV 346

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 386800747 331 DVIILTWIGGMPveDPYIIIGQVASFVYFFIFLGLFPLAGLLE 373
Cdd:COG1290  347 FFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 6.19e-88

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 264.23  E-value: 6.19e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747   9 PLLKIANDALVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIRNMHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  89 FFFICIYLHVGRGLYYGSY--LYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 386800747 167 GFSVDNATLTRFFAFHFLFPFVILAVTVLHLLFLHETGSN 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 1.79e-80

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 244.60  E-value: 1.79e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747   18 LVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIRNMHANGASFFFICIYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747   98 VGRGLYYG--SYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 386800747  176 TRFFAFHFLFPFVILAVTVLHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 239-325 1.41e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.12  E-value: 1.41e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  239 LTSLALFSPNYLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQRSLTF- 317
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFr 125


                  ....*...
gi 386800747  318 RPLSQLIF 325
Cdd:TIGR01156 126 RPVATTVF 133
 
Name Accession Description Interval E-value
CYTB MTH00131
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 786.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747   1 MTSLRKSHPLLKIANDALVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIR 80
Cdd:MTH00131   1 MASLRKTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  81 NMHANGASFFFICIYLHVGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160
Cdd:MTH00131  81 NLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVILAVTVLHLLFLHETGSNNPVGLNSDADKIPFHPYFSYKDLLGFAIMLLALT 240
Cdd:MTH00131 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALT 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 241 SLALFSPNYLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQRSLTFRPL 320
Cdd:MTH00131 241 SLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 386800747 321 SQLIFWTLVADVIILTWIGGMPVEDPYIIIGQVASFVYFFIFLGLFPLAGLLENKLLQ 378
Cdd:MTH00131 321 TQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALE 378
CYTB MTH00119
cytochrome b; Provisional
 1-379 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 716.68  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747   1 MTSLRKSHPLLKIANDALVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIR 80
Cdd:MTH00119   2 APNLRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  81 NMHANGASFFFICIYLHVGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160
Cdd:MTH00119  82 NLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVILAVTVLHLLFLHETGSNNPVGLNSDADKIPFHPYFSYKDLLGFAIMLLALT 240
Cdd:MTH00119 162 VEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 241 SLALFSPNYLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQRSLTFRPL 320
Cdd:MTH00119 242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 386800747 321 SQLIFWTLVADVIILTWIGGMPVEDPYIIIGQVASFVYFFIFLGLFPLAGLLENKLLQT 379
Cdd:MTH00119 322 SQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00074
cytochrome b; Provisional
 4-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 701.44  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747   4 LRKSHPLLKIANDALVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIRNMH 83
Cdd:MTH00074   5 IRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  84 ANGASFFFICIYLHVGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163
Cdd:MTH00074  85 ANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 164 IWGGFSVDNATLTRFFAFHFLFPFVILAVTVLHLLFLHETGSNNPVGLNSDADKIPFHPYFSYKDLLGFAIMLLALTSLA 243
Cdd:MTH00074 165 IWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLS 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 244 LFSPNYLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQRSLTFRPLSQL 323
Cdd:MTH00074 245 LFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQI 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 386800747 324 IFWTLVADVIILTWIGGMPVEDPYIIIGQVASFVYFFIFLGLFPLAGLLENKLLQ 378
Cdd:MTH00074 325 LFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLK 379
CYTB MTH00100
cytochrome b; Provisional
 1-378 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 695.23  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747   1 MTSLRKSHPLLKIANDALVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIR 80
Cdd:MTH00100   1 MTNIRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  81 NMHANGASFFFICIYLHVGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160
Cdd:MTH00100  81 YLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTL 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVILAVTVLHLLFLHETGSNNPVGLNSDADKIPFHPYFSYKDLLGFAIMLLALT 240
Cdd:MTH00100 161 VEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 241 SLALFSPNYLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQRSLTFRPL 320
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 386800747 321 SQLIFWTLVADVIILTWIGGMPVEDPYIIIGQVASFVYFFIFLGLFPLAGLLENKLLQ 378
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
CYTB MTH00191
cytochrome b; Provisional
 4-368 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 663.15  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747   4 LRKSHPLLKIANDALVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIRNMH 83
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  84 ANGASFFFICIYLHVGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 164 IWGGFSVDNATLTRFFAFHFLFPFVILAVTVLHLLFLHETGSNNPVGLNSDADKIPFHPYFSYKDLLGFAIMLLALTSLA 243
Cdd:MTH00191 161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 244 LFSPNYLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQRSLTFRPLSQL 323
Cdd:MTH00191 241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*
gi 386800747 324 IFWTLVADVIILTWIGGMPVEDPYIIIGQVASFVYFFIFLGLFPL 368
Cdd:MTH00191 321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00156
cytochrome b; Provisional
 11-363 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 632.59  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  11 LKIANDALVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIRNMHANGASFF 90
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  91 FICIYLHVGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSV 170
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 171 DNATLTRFFAFHFLFPFVILAVTVLHLLFLHETGSNNPVGLNSDADKIPFHPYFSYKDLLGFAIMLLALTSLALFSPNYL 250
Cdd:MTH00156 161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 251 GDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQRSLTFRPLSQLIFWTLVA 330
Cdd:MTH00156 241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                        330       340       350
                 ....*....|....*....|....*....|...
gi 386800747 331 DVIILTWIGGMPVEDPYIIIGQVASFVYFFIFL 363
Cdd:MTH00156 321 IVILLTWIGARPVEEPYILTGQILTILYFLYFI 353
CYTB MTH00034
cytochrome b; Validated
 4-377 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 621.34  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747   4 LRKSHPLLKIANDALVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIRNMH 83
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  84 ANGASFFFICIYLHVGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 164 IWGGFSVDNATLTRFFAFHFLFPFVILAVTVLHLLFLHETGSNNPVGLNSDADKIPFHPYFSYKDLLGFAIMLLALTSLA 243
Cdd:MTH00034 164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 244 LFSPNYLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQRSLTFRPLSQL 323
Cdd:MTH00034 244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 386800747 324 IFWTLVADVIILTWIGGMPVEDPYIIIGQVASFVYFFIFLGLFPLAGLLENKLL 377
Cdd:MTH00034 324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00145
cytochrome b; Provisional
 1-377 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 612.68  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747   1 MTSLRKSHPLLKIANDALVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIR 80
Cdd:MTH00145   2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  81 NMHANGASFFFICIYLHVGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160
Cdd:MTH00145  82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVILAVTVLHLLFLHETGSNNPVGLNSDADKIPFHPYFSYKDLLGFAIMLLALT 240
Cdd:MTH00145 162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 241 SLALFSPNYLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQRSLTFRPL 320
Cdd:MTH00145 242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 386800747 321 SQLIFWTLVADVIILTWIGGMPVEDPYIIIGQVASFVYFFIFLgLFPLAGLLENKLL 377
Cdd:MTH00145 322 NQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFL-ILPLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-377 0e+00

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 577.40  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747   1 MTSLRKSHPLLKIANDALVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIR 80
Cdd:MTH00016   2 FSPMRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLR 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  81 NMHANGASFFFICIYLHVGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTL 160
Cdd:MTH00016  82 NLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKML 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 161 VQWIWGGFSVDNATLTRFFAFHFLFPFVILAVTVLHLLFLHETGSNNPVGLNSDADKIPFHPYFSYKDLLGFAIMLLALT 240
Cdd:MTH00016 162 VQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 241 SLALFSPNYLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQRSLTFRPL 320
Cdd:MTH00016 242 SVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 386800747 321 SQLIFWTLVADVIILTWIGGMPVEDPYIIIGQVASFVYFFIFLgLFPLAGLLENKLL 377
Cdd:MTH00016 322 NQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFM-INPLLMKLWDKLL 377
CYTB MTH00022
cytochrome b; Validated
 4-377 0e+00

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 518.87  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747   4 LRKSHPLLKIANDALVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIRNMH 83
Cdd:MTH00022   3 LRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLH 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  84 ANGASFFFICIYLHVGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163
Cdd:MTH00022  83 ANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIVQW 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 164 IWGGFSVDNATLTRFFAFHFLFPFVILAVTVLHLLFLHETGSNNPVGLNSDADKIPFHPYFSYKDLLGFAIMLLALTSLA 243
Cdd:MTH00022 163 VWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIV 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 244 LFSPNYLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQRSLTFRPLSQL 323
Cdd:MTH00022 243 YFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRM 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 386800747 324 IFWTLVADVIILTWIGGMPVEDPYIIIGQVASFVYFFIFLGLFPLAGLLENKLL 377
Cdd:MTH00022 323 AFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLL 376
CYTB MTH00053
cytochrome b; Provisional
 3-380 0e+00

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 512.71  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747   3 SLRKSHPLLKIANDALVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIRNM 82
Cdd:MTH00053   4 TIRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  83 HANGASFFFICIYLHVGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQ 162
Cdd:MTH00053  84 HANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVR 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 163 WIWGGFSVDNATLTRFFAFHFLFPFVILAVTVLHLLFLHETGSNNPVGLNSDADKIPFHPYFSYKDLLGFAIMLLALTSL 242
Cdd:MTH00053 164 WVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSII 243

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 243 ALFSPNYLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQRSLTFRPLSQ 322
Cdd:MTH00053 244 VFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSK 323

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 386800747 323 LIFWTLVADVIILTWIGGMPVEDPYIIIGQVASFVYFFIFLGLFPLAGLLENKLLQTI 380
Cdd:MTH00053 324 ILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLKLV 381
CYTB MTH00224
cytochrome b; Provisional
 4-377 1.54e-180

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 506.00  E-value: 1.54e-180
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747   4 LRKSHPLLKIANDALVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIRNMH 83
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  84 ANGASFFFICIYLHVGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEW 164

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 164 IWGGFSVDNATLTRFFAFHFLFPFVILAVTVLHLLFLHETGSNNPVGLNSDADKIPFHPYFSYKDLLGFAIMLLALTSLA 243
Cdd:MTH00224 165 IWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMV 244

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 244 LFSPNYLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQRSLTFRPLSQL 323
Cdd:MTH00224 245 LFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQL 324

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 386800747 324 IFWTLVADVIILTWIGGMPVEDPYIIIGQVASFVYFFIFLgLFPLAGLLENKLL 377
Cdd:MTH00224 325 LFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFI-ISPAISKLWDDLL 377
CYTB MTH00033
cytochrome b; Provisional
 10-374 2.01e-137

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 397.00  E-value: 2.01e-137
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  10 LLKIANDaLVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIRNMHANGASF 89
Cdd:MTH00033   8 LLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASL 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  90 FFICIYLHVGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFS 169
Cdd:MTH00033  87 FFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFS 166

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 170 VDNATLTRFFAFHFLFPFVILAVTVLHLLFLHETGSNNPVGLNSDADKIPFHPYFSYKDLLGFAIMLLALTSLALFS--P 247
Cdd:MTH00033 167 VSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriE 246

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 248 NYLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQRSLTFRPLSQLIFWT 327
Cdd:MTH00033 247 TLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWF 326

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 386800747 328 LVADVIILTWIGGMPV-EDPYIIIGQVASFVYFFIFLGLFPLAGLLEN 374
Cdd:MTH00033 327 IVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
22-373 7.11e-129

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 375.28  E-value: 7.11e-129
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  22 PAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIRNMHANGASFFFICIYLHVGRG 101
Cdd:COG1290   31 PFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRG 110

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 102 LYYGSylYKE----TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTR 177
Cdd:COG1290  111 FFYGA--YKKprelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNR 188

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 178 FFAF-HFLFPFVILAVTVLHLLFLHETGSNNPVG----LNSDADKIPFHPYFSYKDLLGFAIMLLALTSLALFSPNylGD 252
Cdd:COG1290  189 FFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NP 266

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 253 PDNFTPANPLVTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALLASILVLMLVPFLHTSKQRSLTFRPLSQLIFWTLVA 330
Cdd:COG1290  267 PPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIV 346

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|...
gi 386800747 331 DVIILTWIGGMPveDPYIIIGQVASFVYFFIFLGLFPLAGLLE 373
Cdd:COG1290  347 FFIVLTILGANP--PIATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 15-366 3.55e-125

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 364.65  E-value: 3.55e-125
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  15 NDALVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIRNMHANGASFFFICI 94
Cdd:MTH00086   4 NSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  95 YLHVGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNAT 174
Cdd:MTH00086  84 YLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSAT 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 175 LTRFFAFHFLFPFVILAVTVLHLLFLHETGSNNPVGLNSDADKIPFHPYFSYKDLLGFaIMLLALTSLALFSPNYLGDPD 254
Cdd:MTH00086 164 LKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNI-IFWLVFIIFSLFYPFNLGDPE 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 255 NFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQrslTFRPLSQLIFWTLVADVII 334
Cdd:MTH00086 243 MFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTS---CLNKLNKFLVFSFIVVNVI 319

                        330       340       350
                 ....*....|....*....|....*....|..
gi 386800747 335 LTWIGGMPVEDPYIIIGQVASFVYFFIFLGLF 366
Cdd:MTH00086 320 LSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 18-363 6.19e-91

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 277.25  E-value: 6.19e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  18 LVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIRNMHANGASFFFICIYLH 97
Cdd:MTH00046   9 LIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIH 88

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  98 VGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTR 177
Cdd:MTH00046  89 MGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVR 168

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 178 FFAFHFLFPFVILAVTVLHLLFLHETGSNNPVGL-NSDADKIPFHPYFSYKDLLGFAIMLLALTSLALFSPNYLGDPDNF 256
Cdd:MTH00046 169 VFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAY 248

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 257 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLALLASILVLMLVPflhtSKQRSLTFRPLSQLIFWTLVADVIILT 336
Cdd:MTH00046 249 LEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LVLVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLS 323

                        330       340
                 ....*....|....*....|....*...
gi 386800747 337 WIGGMPVEDPYIIIGQVASF-VYFFIFL 363
Cdd:MTH00046 324 YLGGCHPEYPYLLISQLFSVlMVLLLFI 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 6.19e-88

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 264.23  E-value: 6.19e-88
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747   9 PLLKIANDALVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIRNMHANGAS 88
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  89 FFFICIYLHVGRGLYYGSY--LYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWG 166
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|
gi 386800747 167 GFSVDNATLTRFFAFHFLFPFVILAVTVLHLLFLHETGSN 206
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 1.79e-80

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 244.60  E-value: 1.79e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747   18 LVDLPAPSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIRNMHANGASFFFICIYLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747   98 VGRGLYYG--SYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 386800747  176 TRFFAFHFLFPFVILAVTVLHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-354 6.67e-56

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 180.15  E-value: 6.67e-56
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 207 NPVGLNSDADKIPFHPYFSYKDLLGFAIMLLALTSLALFSPNYLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 286
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 386800747 287 KLGGVLALLASILVLMLVPFLHTSKQRSlTFRPLSQLIFWTLVADVIILTWIGGMPVEDPYIIIGQVA 354
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
258-358 2.88e-49

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 161.11  E-value: 2.88e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  258 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQRSLTFRPLSQLIFWTLVADVIILTW 337
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 386800747  338 IGGMPVEDPYIIIGQVASFVY 358
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-253 1.73e-45

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 153.94  E-value: 1.73e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747   88 SFFFICIYLHVGRGLYYGSYLYKE--TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  166 GGFSVDNATLTRFFAF-HFLFPFVILAVTVLHLLFLHETGSNNPVGLNSDADKIPFHPYFSYKDLLGFAIMLLALTSLAL 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALhILLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 386800747  245 FSPNYLGDP 253
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 33-177 1.91e-33

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 124.05  E-value: 1.91e-33
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  33 FGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIRNMHANGASFFFICIYLHVGRGLYYGSYLYKE- 111
Cdd:PRK03735  44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 386800747 112 -TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTR 177
Cdd:PRK03735 124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTR 190
petB CHL00070
cytochrome b6
 24-208 9.10e-28

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 108.65  E-value: 9.10e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  24 PSNISAWWNFGSLLGICLIAQILTGLFLAMHYTADIATAFSSVAHICRDVNFGWLIRNMHANGASFFFICIYLHVGRGLY 103
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 104 YGSYLYKE--TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAF 181
Cdd:CHL00070 107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170       180
                 ....*....|....*....|....*...
gi 386800747 182 HFLFPFVILAVTVL-HLLFLHETGSNNP 208
Cdd:CHL00070 187 HTFVLPLLTAVFMLmHFLMIRKQGISGP 214
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 238-345 2.53e-13

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 67.13  E-value: 2.53e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 238 ALTSLALFSPNYLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQRSLTF 317
Cdd:COG5679   51 LCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENVNKFQNPF 125

                         90       100       110
                 ....*....|....*....|....*....|..
gi 386800747 318 -RPLSQLIFwtLVADVIILtWIG---GMPVED 345
Cdd:COG5679  126 rRPVATAVF--LFGTLVTL-WLGigaALPIDK 154
petD CHL00058
cytochrome b6/f complex subunit IV
 239-330 2.04e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 64.64  E-value: 2.04e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747 239 LTSLALFSPNYLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQRSLTF- 317
Cdd:CHL00058  51 NVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQNPFr 125

                         90
                 ....*....|....*
gi 386800747 318 RPLSQLIFW--TLVA 330
Cdd:CHL00058 126 RPVATTVFLigTAVA 140
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 239-325 1.41e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.12  E-value: 1.41e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 386800747  239 LTSLALFSPNYLGDPdnftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLASILVLMLVPFLHTSKQRSLTF- 317
Cdd:TIGR01156  51 VVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQNPFr 125


                  ....*...
gi 386800747  318 RPLSQLIF 325
Cdd:TIGR01156 126 RPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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