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Conserved domains on  [gi|322422442|ref|YP_004221868|]
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cytochrome b (mitochondrion) [Penicillium digitatum]

Protein Classification

cytochrome b family protein( domain architecture ID 581032)

cytochrome b family protein such as formate dehydrogenase subunit gamma or cytochrome b, a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.

Gene Ontology:  GO:0046872|GO:0016491

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Cytochrome_b_N super family cl23723
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 3-378 0e+00

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


The actual alignment was detected with superfamily member MTH00119:

Pssm-ID: 474033 [Multi-domain]  Cd Length: 380  Bit Score: 514.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   3 ILKSHPLLRLVNSYLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLH 82
Cdd:MTH00119   5 LRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  83 ANTASAFFFLVYLHIGRGLYYGSYKSPRTltWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIV 162
Cdd:MTH00119  85 ANGASMFFICIYLHIGRGLYYGSYLYKET--WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 163 EFIWGGFSVNNATLNRFFALHFLLPFVLAALVLMHLIAYHDVvGSGNPLGISANYDRLPFAPYFLFKDLVTIFLFFIVLS 242
Cdd:MTH00119 163 EWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHET-GSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 243 IFVFFMPNALGDSENYVMANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFAAILALMAMPLTDLSKLRGVQFRPL 322
Cdd:MTH00119 242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 322422442 323 SKIAFFIFVANLLVLMQIGAKHVETPFIEVGQISTILYFAHFFIIVPVVSIIENSL 378
Cdd:MTH00119 322 SQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKM 377
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 3-378 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 514.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   3 ILKSHPLLRLVNSYLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLH 82
Cdd:MTH00119   5 LRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  83 ANTASAFFFLVYLHIGRGLYYGSYKSPRTltWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIV 162
Cdd:MTH00119  85 ANGASMFFICIYLHIGRGLYYGSYLYKET--WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 163 EFIWGGFSVNNATLNRFFALHFLLPFVLAALVLMHLIAYHDVvGSGNPLGISANYDRLPFAPYFLFKDLVTIFLFFIVLS 242
Cdd:MTH00119 163 EWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHET-GSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 243 IFVFFMPNALGDSENYVMANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFAAILALMAMPLTDLSKLRGVQFRPL 322
Cdd:MTH00119 242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 322422442 323 SKIAFFIFVANLLVLMQIGAKHVETPFIEVGQISTILYFAHFFIIVPVVSIIENSL 378
Cdd:MTH00119 322 SQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKM 377
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
8-375 1.83e-141

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 407.64  E-value: 1.83e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   8 PLLRLVNsYLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLHANTAS 87
Cdd:COG1290   19 PLASLVR-EHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  88 AFFFLVYLHIGRGLYYGSYKSPRTLTWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIVEFIWG 167
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 168 GFSVNNATLNRFFALH-FLLPFVLAALVLMHLIAYHdVVGSGNPLGISA----NYDRLPFAPYFLFKDLVTIFLFFIVLS 242
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLH-RHGHNNPPGPERkkteKVDGVPFHPYYTVKDGFGFFVFLGVFA 256

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 243 IFVFFMPNalGDSENYVMANPMQTPPAIVPEWYLLPFYAILRSIP--NKLLGVIAMFAAILALMAMPLTDLSKLRGVQFR 320
Cdd:COG1290  257 LLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYR 334

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 322422442 321 PLSKIAFFIFVANLLVLMQIGAKhvETPFIEVGQISTILYFAHFFIIVPVVSIIE 375
Cdd:COG1290  335 PVRTALGVAFIVFFIVLTILGAN--PPIATLLGSINTVTYFAFFLIVLPILAFIE 387
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 8-202 1.11e-87

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 263.46  E-value: 1.11e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   8 PLLRLVNSYLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLHANTAS 87
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  88 AFFFLVYLHIGRGLYYGSYKSPRTLTWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIVEFIWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 322422442 168 GFSVNNATLNRFFALHFLLPFVLAALVLMHLIAYH 202
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLH 195
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
17-202 1.62e-75

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 232.27  E-value: 1.62e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   17 LIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLHANTASAFFFLVYLH 96
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   97 IGRGLYYGSYKSPRTLTWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIVEFIWGGFSVNNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*.
gi 322422442  177 NRFFALHFLLPFVLAALVLMHLIAYH 202
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLH 186
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 261-329 1.67e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.12  E-value: 1.67e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  261 ANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFAAILALMAMP-LTDLSKLRGVQFRPLSKIAFFI 329
Cdd:TIGR01156  66 ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPfIENVNKFQNPFRRPVATTVFLF 135
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 3-378 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 514.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   3 ILKSHPLLRLVNSYLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLH 82
Cdd:MTH00119   5 LRKSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  83 ANTASAFFFLVYLHIGRGLYYGSYKSPRTltWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIV 162
Cdd:MTH00119  85 ANGASMFFICIYLHIGRGLYYGSYLYKET--WNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 163 EFIWGGFSVNNATLNRFFALHFLLPFVLAALVLMHLIAYHDVvGSGNPLGISANYDRLPFAPYFLFKDLVTIFLFFIVLS 242
Cdd:MTH00119 163 EWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHET-GSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 243 IFVFFMPNALGDSENYVMANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFAAILALMAMPLTDLSKLRGVQFRPL 322
Cdd:MTH00119 242 TLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 322422442 323 SKIAFFIFVANLLVLMQIGAKHVETPFIEVGQISTILYFAHFFIIVPVVSIIENSL 378
Cdd:MTH00119 322 SQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKM 377
CYTB MTH00156
cytochrome b; Provisional
 10-367 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 512.02  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  10 LRLVNSYLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLHANTASAF 89
Cdd:MTH00156   1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  90 FFLVYLHIGRGLYYGSYKspRTLTWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIVEFIWGGF 169
Cdd:MTH00156  81 FICIYLHIGRGIYYGSYK--LKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGF 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 170 SVNNATLNRFFALHFLLPFVLAALVLMHLIAYHDVvGSGNPLGISANYDRLPFAPYFLFKDLVTIFLFFIVLSIFVFFMP 249
Cdd:MTH00156 159 SVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQT-GSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINP 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 250 NALGDSENYVMANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFAAILALMAMPLTDLSKLRGVQFRPLSKIAFFI 329
Cdd:MTH00156 238 YLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWI 317

                        330       340       350
                 ....*....|....*....|....*....|....*...
gi 322422442 330 FVANLLVLMQIGAKHVETPFIEVGQISTILYFAHFFII 367
Cdd:MTH00156 318 FVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00100
cytochrome b; Provisional
 3-380 4.70e-177

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 497.62  E-value: 4.70e-177
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   3 ILKSHPLLRLVNSYLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLH 82
Cdd:MTH00100   4 IRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  83 ANTASAFFFLVYLHIGRGLYYGSYKSPRTltWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIV 162
Cdd:MTH00100  84 ANGASMFFICLFLHVGRGLYYGSYLFLET--WNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 163 EFIWGGFSVNNATLNRFFALHFLLPFVLAALVLMHLIAYHDVvGSGNPLGISANYDRLPFAPYFLFKDLVTIFLFFIVLS 242
Cdd:MTH00100 162 EWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHET-GSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLM 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 243 IFVFFMPNALGDSENYVMANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFAAILALMAMPLTDLSKLRGVQFRPL 322
Cdd:MTH00100 241 LLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 322422442 323 SKIAFFIFVANLLVLMQIGAKHVETPFIEVGQISTILYFAHFFIIVPVVSIIENSLVE 380
Cdd:MTH00100 321 SQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLK 378
CYTB MTH00191
cytochrome b; Provisional
 3-370 6.03e-176

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 494.05  E-value: 6.03e-176
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   3 ILKSHPLLRLVNSYLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLH 82
Cdd:MTH00191   1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  83 ANTASAFFFLVYLHIGRGLYYGSYKspRTLTWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIV 162
Cdd:MTH00191  81 ANGASFFFICIYLHIGRGLYYGSYL--NKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLV 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 163 EFIWGGFSVNNATLNRFFALHFLLPFVLAALVLMHLIAYHDVvGSGNPLGISANYDRLPFAPYFLFKDLVTIFLFFIVLS 242
Cdd:MTH00191 159 QWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHET-GSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLL 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 243 IFVFFMPNALGDSENYVMANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFAAILALMAMPLTDLSKLRGVQFRPL 322
Cdd:MTH00191 238 FLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPL 317

                        330       340       350       360
                 ....*....|....*....|....*....|....*....|....*...
gi 322422442 323 SKIAFFIFVANLLVLMQIGAKHVETPFIEVGQISTILYFAHFFIIVPV 370
Cdd:MTH00191 318 TQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00131
cytochrome b; Provisional
 5-382 2.33e-172

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 485.70  E-value: 2.33e-172
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   5 KSHPLLRLVNSYLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLHAN 84
Cdd:MTH00131   6 KTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHAN 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  85 TASAFFFLVYLHIGRGLYYGSYKSPRTltWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIVEF 164
Cdd:MTH00131  86 GASFFFICIYLHIGRGLYYGSYLYKET--WNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQW 163

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 165 IWGGFSVNNATLNRFFALHFLLPFVLAALVLMHLIAYHDVvGSGNPLGISANYDRLPFAPYFLFKDLVTIFLFFIVLSIF 244
Cdd:MTH00131 164 IWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHET-GSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSL 242

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 245 VFFMPNALGDSENYVMANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFAAILALMAMPLTDLSKLRGVQFRPLSK 324
Cdd:MTH00131 243 ALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQ 322

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 322422442 325 IAFFIFVANLLVLMQIGAKHVETPFIEVGQISTILYFAHFFIIVPVVSIIENSLVELA 382
Cdd:MTH00131 323 FLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEWA 380
CYTB MTH00145
cytochrome b; Provisional
 3-379 6.13e-171

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 482.10  E-value: 6.13e-171
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   3 ILKSHPLLRLVNSYLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLH 82
Cdd:MTH00145   5 LRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  83 ANTASAFFFLVYLHIGRGLYYGSYKSPRTltWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIV 162
Cdd:MTH00145  85 ANGASFFFICIYLHIGRGLYYGSYLMQHT--WNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 163 EFIWGGFSVNNATLNRFFALHFLLPFVLAALVLMHLIAYHDVvGSGNPLGISANYDRLPFAPYFLFKDLVTIFLFFIVLS 242
Cdd:MTH00145 163 EWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHET-GSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 243 IFVFFMPNALGDSENYVMANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFAAILALMAMPLTDLSKLRGVQFRPL 322
Cdd:MTH00145 242 FLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 322422442 323 SKIAFFIFVANLLVLMQIGAKHVETPFIEVGQISTILYFAhFFIIVPVVSIIENSLV 379
Cdd:MTH00145 322 NQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFL-FFLILPLVQKLWDNIL 377
CYTB MTH00074
cytochrome b; Provisional
 3-381 1.15e-167

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 473.78  E-value: 1.15e-167
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   3 ILKSHPLLRLVNSYLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLH 82
Cdd:MTH00074   5 IRKTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  83 ANTASAFFFLVYLHIGRGLYYGSYKSPRTltWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIV 162
Cdd:MTH00074  85 ANGASFFFICIYLHIGRGLYYGSYMYKET--WNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 163 EFIWGGFSVNNATLNRFFALHFLLPFVLAALVLMHLIAYHDVvGSGNPLGISANYDRLPFAPYFLFKDLVTIFLFFIVLS 242
Cdd:MTH00074 163 QWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHET-GSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALA 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 243 IFVFFMPNALGDSENYVMANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFAAILALMAMPLTDLSKLRGVQFRPL 322
Cdd:MTH00074 242 LLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 322422442 323 SKIAFFIFVANLLVLMQIGAKHVETPFIEVGQISTILYFAHFFIIVPVVSIIENSLVEL 381
Cdd:MTH00074 322 TQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00016
cytochrome b; Validated
 3-378 1.03e-165

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 468.77  E-value: 1.03e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   3 ILKSHPLLRLVNSYLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLH 82
Cdd:MTH00016   5 MRKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  83 ANTASAFFFLVYLHIGRGLYYGSYKSprTLTWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIV 162
Cdd:MTH00016  85 ANGASFFFICLYLHIGRGIYYGSYFL--METWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 163 EFIWGGFSVNNATLNRFFALHFLLPFVLAALVLMHLIAYHDVvGSGNPLGISANYDRLPFAPYFLFKDLVTIFLFFIVLS 242
Cdd:MTH00016 163 QWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQT-GSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 243 IFVFFMPNALGDSENYVMANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFAAILALMAMPLTDLSKLRGVQFRPL 322
Cdd:MTH00016 242 SVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 322422442 323 SKIAFFIFVANLLVLMQIGAKHVETPFIEVGQISTILYFAHFFIIVPVVSIIENSL 378
Cdd:MTH00016 322 NQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLL 377
CYTB MTH00022
cytochrome b; Validated
 1-378 2.50e-165

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 467.64  E-value: 2.50e-165
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   1 MRILKSHPLLRLVNSYLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRY 80
Cdd:MTH00022   1 MPLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRY 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  81 LHANTASAFFFLVYLHIGRGLYYGSYKspRTLTWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQD 160
Cdd:MTH00022  81 LHANGASLFFLCLYIHIGRGLYYGGYL--KFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTD 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 161 IVEFIWGGFSVNNATLNRFFALHFLLPFVLAALVLMHLIAYHdVVGSGNPLGISANYDRLPFAPYFLFKDLVTIFLFFIV 240
Cdd:MTH00022 159 IVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLH-VDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFL 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 241 LSIFVFFMPNALGDSENYVMANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFAAILALMAMPLTDLSKLRGVQFR 320
Cdd:MTH00022 238 LSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFR 317

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 322422442 321 PLSKIAFFIFVANLLVLMQIGAKHVETPFIEVGQISTILYFAHFFIIVPVVSIIENSL 378
Cdd:MTH00022 318 PLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQL 375
CYTB MTH00034
cytochrome b; Validated
 3-379 3.84e-163

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 462.25  E-value: 3.84e-163
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   3 ILKSHPLLRLVNSYLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLH 82
Cdd:MTH00034   4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  83 ANTASAFFFLVYLHIGRGLYYGSYKSprTLTWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIV 162
Cdd:MTH00034  84 ANGASLFFICLYFHIGRGLYYGSYVN--IETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIV 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 163 EFIWGGFSVNNATLNRFFALHFLLPFVLAALVLMHLIAYHDVvGSGNPLGISANYDRLPFAPYFLFKDLVTIFLFFIVLS 242
Cdd:MTH00034 162 QWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQT-GSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALS 240

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 243 IFVFFMPNALGDSENYVMANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFAAILALMAMPLTDLSKLRGVQFRPL 322
Cdd:MTH00034 241 SLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPL 320

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 322422442 323 SKIAFFIFVANLLVLMQIGAKHVETPFIEVGQISTILYFAHFFIIVPVVSIIENSLV 379
Cdd:MTH00034 321 SQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00053
cytochrome b; Provisional
 3-381 2.92e-157

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 447.23  E-value: 2.92e-157
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   3 ILKSHPLLRLVNSYLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLH 82
Cdd:MTH00053   5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  83 ANTASAFFFLVYLHIGRGLYYGSYKspRTLTWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIV 162
Cdd:MTH00053  85 ANGASMFFLCVYFHIGRGIYYGSYT--KIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 163 EFIWGGFSVNNATLNRFFALHFLLPFVLAALVLMHLIAYHDVvGSGNPLGISANYDRLPFAPYFLFKDLVTIFLFFIVLS 242
Cdd:MTH00053 163 RWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHED-GSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILS 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 243 IFVFFMPNALGDSENYVMANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFAAILALMAMPLTDLSKLRGVQFRPL 322
Cdd:MTH00053 242 IIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 322422442 323 SKIAFFIFVANLLVLMQIGAKHVETPFIEVGQISTILYFAHFFIIVPVVSIIENSLVEL 381
Cdd:MTH00053 322 SKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLKL 380
CYTB MTH00224
cytochrome b; Provisional
 3-379 3.73e-142

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 408.93  E-value: 3.73e-142
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   3 ILKSHPLLRLVNSYLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLH 82
Cdd:MTH00224   5 FRTTHPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIH 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  83 ANTASAFFFLVYLHIGRGLYYGSYKSPRTltWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIV 162
Cdd:MTH00224  85 ANGASMFFLFIYLHVGRGLYYGSFNLSET--WNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLV 162

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 163 EFIWGGFSVNNATLNRFFALHFLLPFVLAALVLMHLIAYHDVvGSGNPLGISANYDRLPFAPYFLFKDLVTIFLFFIVLS 242
Cdd:MTH00224 163 EWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQT-GSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLS 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 243 IFVFFMPNALGDSENYVMANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFAAILALMAMPLTDLSKLRGVQFRPL 322
Cdd:MTH00224 242 LMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPL 321

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 322422442 323 SKIAFFIFVANLLVLMQIGAKHVETPFIEVGQISTILYFAhFFIIVPVVSIIENSLV 379
Cdd:MTH00224 322 NQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS-YFIISPAISKLWDDLL 377
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
8-375 1.83e-141

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 407.64  E-value: 1.83e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   8 PLLRLVNsYLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLHANTAS 87
Cdd:COG1290   19 PLASLVR-EHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGAS 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  88 AFFFLVYLHIGRGLYYGSYKSPRTLTWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIVEFIWG 167
Cdd:COG1290   98 LFFAAVYLHMFRGFFYGAYKKPRELNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFG 177

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 168 GFSVNNATLNRFFALH-FLLPFVLAALVLMHLIAYHdVVGSGNPLGISA----NYDRLPFAPYFLFKDLVTIFLFFIVLS 242
Cdd:COG1290  178 GEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLH-RHGHNNPPGPERkkteKVDGVPFHPYYTVKDGFGFFVFLGVFA 256

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 243 IFVFFMPNalGDSENYVMANPMQTPPAIVPEWYLLPFYAILRSIP--NKLLGVIAMFAAILALMAMPLTDLSKLRGVQFR 320
Cdd:COG1290  257 LLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYR 334

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 322422442 321 PLSKIAFFIFVANLLVLMQIGAKhvETPFIEVGQISTILYFAHFFIIVPVVSIIE 375
Cdd:COG1290  335 PVRTALGVAFIVFFIVLTILGAN--PPIATLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00033
cytochrome b; Provisional
 4-380 8.34e-120

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 352.32  E-value: 8.34e-120
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   4 LKSHPLLRLVNSyLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLHA 83
Cdd:MTH00033   3 LRKTGLLEPVND-IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHA 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  84 NTASAFFFLVYLHIGRGLYYGSYKspRTLTWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIVE 163
Cdd:MTH00033  82 NGASLFFICVYCHIGRGLYYGGYS--RVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVE 159

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 164 FIWGGFSVNNATLNRFFALHFLLPFVLAALVLMHLIAYHDvVGSGNPLGISANYDRLPFAPYFLFKDLVTIFLFFIVLSI 243
Cdd:MTH00033 160 WIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHE-KGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVI 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 244 FVF--FMPNALGDSENYVMANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFAAILALMAMPLTDLSKLRGVQFRP 321
Cdd:MTH00033 239 IGIepRIETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNP 318

                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 322 LSKIAFFIFVANLLVLMQIGAKHVET-PFIEVGQISTILYFAHFFIIVPVVSIIENSLVE 380
Cdd:MTH00033 319 TGKFFFWFIVGDFIILTWIGSAPAGAdPYVLIGRIATIFYFGYFLVLVPLLGYLSNLFYE 378
CYTB MTH00086
cytochrome b; Provisional
 13-367 7.77e-108

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 320.73  E-value: 7.77e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  13 VNSYLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLHANTASAFFFL 92
Cdd:MTH00086   3 VNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIF 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  93 VYLHIGRGLYYGSYKspRTLTWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIVEFIWGGFSVN 172
Cdd:MTH00086  83 LYLHIFKGLFMMSYR--LKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 173 NATLNRFFALHFLLPFVLAALVLMHLIAYHDvVGSGNPLGISANYDRLPFAPYFLFKDLVTIFlFFIVLSIFVFFMPNAL 252
Cdd:MTH00086 161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHS-TGSTSSLYCHGDYDKICFGPEYWNKDAYNII-FWLVFIIFSLFYPFNL 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 253 GDSENYVMANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFAAILALMAMPLTDLSklrGVQFRPLSKIAFFIFVA 332
Cdd:MTH00086 239 GDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIV 315

                        330       340       350
                 ....*....|....*....|....*....|....*
gi 322422442 333 NLLVLMQIGAKHVETPFIEVGQISTILYFAHFFII 367
Cdd:MTH00086 316 VNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLM 350
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 8-202 1.11e-87

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 263.46  E-value: 1.11e-87
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   8 PLLRLVNSYLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLHANTAS 87
Cdd:cd00284    1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  88 AFFFLVYLHIGRGLYYGSYKSPRTLTWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIVEFIWG 167
Cdd:cd00284   81 MFFLMLYLHIFRGLYYGSYKKPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                        170       180       190
                 ....*....|....*....|....*....|....*
gi 322422442 168 GFSVNNATLNRFFALHFLLPFVLAALVLMHLIAYH 202
Cdd:cd00284  161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLH 195
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
17-202 1.62e-75

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 232.27  E-value: 1.62e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   17 LIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLHANTASAFFFLVYLH 96
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   97 IGRGLYYGSYKSPRTLTWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIVEFIWGGFSVNNATL 176
Cdd:pfam00033  81 IFRGLYYGGFSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*.
gi 322422442  177 NRFFALHFLLPFVLAALVLMHLIAYH 202
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLH 186
CYTB MTH00046
cytochrome b; Validated
 9-366 1.33e-74

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 235.65  E-value: 1.33e-74
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   9 LLRLVNSYLIDAPTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLHANTASA 88
Cdd:MTH00046   1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  89 FFFLVYLHIGRGLYYGSYKspRTLTWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIVEFIWGG 168
Cdd:MTH00046  81 LFILLFIHMGRALYYSSYS--KKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGG 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 169 FSVNNATLNRFFALHFLLPFVLAALVLMHLIAYHDvVGSGNPLGISANY-DRLPFAPYFLFKDLVTIFLFFIVLSIFVFF 247
Cdd:MTH00046 159 FSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHK-SGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLVFWLFV 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 248 MPNALGDSENYVMANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIaMFAAILALMAMPLTDLSKLRGVqfrpLSKIAF 327
Cdd:MTH00046 238 SPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV----WRQVNF 312

                        330       340       350
                 ....*....|....*....|....*....|....*....
gi 322422442 328 FIFVANLLVLMQIGAKHVETPFIEVGQISTILYFAHFFI 366
Cdd:MTH00046 313 WLIVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 209-355 3.94e-48

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 160.12  E-value: 3.94e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 209 NPLGISANYDRLPFAPYFLFKDLVTIFLFFIVLSIFVFFMPNALGDSENYVMANPMQTPPAIVPEWYLLPFYAILRSIPN 288
Cdd:cd00290    1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 322422442 289 KLLGVIAMFAAILALMAMPLTDLSKLRGvQFRPLSKIAFFIFVANLLVLMQIGAKHVETPFIEVGQI 355
Cdd:cd00290   81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
PRK03735 PRK03735
cytochrome b6; Provisional
 21-199 7.40e-47

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 159.49  E-value: 7.40e-47
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  21 PTPANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLHANTASAFFFLVYLHIGRG 100
Cdd:PRK03735  33 PAHHFSAFVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRV 112

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 101 LYYGSYKSPRTLTWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIVEFIWGGFSVNNATLNRFF 180
Cdd:PRK03735 113 FFTGGYKKPRELNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFF 192

                        170       180
                 ....*....|....*....|
gi 322422442 181 ALH-FLLPFVLAALVLMHLI 199
Cdd:PRK03735 193 AIHvFFLPWALAVLMLAHFL 212
petB CHL00070
cytochrome b6
 23-197 7.90e-44

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 151.41  E-value: 7.90e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  23 PANISYFWNFGSLLAICLIIQIVTGVTLAMHYTPSVAEAFNSVEHIMRDVNNGWLIRYLHANTASAFFFLVYLHIGRGLY 102
Cdd:CHL00070  27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 103 YGSYKSPRTLTWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIVEFIWGGFSVNNATLNRFFAL 182
Cdd:CHL00070 107 TGGFKKPRELTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                        170
                 ....*....|....*.
gi 322422442 183 H-FLLPFVLAALVLMH 197
Cdd:CHL00070 187 HtFVLPLLTAVFMLMH 202
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
260-360 9.78e-44

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 147.24  E-value: 9.78e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  260 MANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFAAILALMAMPLTDLSKLRGVQFRPLSKIAFFIFVANLLVLMQ 339
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 322422442  340 IGAKHVETPFIEVGQISTILY 360
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
87-254 1.52e-38

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 135.83  E-value: 1.52e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442   87 SAFFFLVYLHIGRGLYYGSYKSPRTLTWIIGTVILIIMMATAFLGYVLPYGQMSLWGATVITNLMSAIPWIGQDIVEFIW 166
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  167 GGFSVNNATLNRFFALHF-LLPFVLAALVLMHLIAYHDvVGSGNPLGISANYDRLPFAPYFLFKDLVTIFLFFIVLSIFV 245
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEK-HGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLA 159


                  ....*....
gi 322422442  246 FFMPNALGD 254
Cdd:pfam13631 160 QINPIWLGG 168
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 210-342 1.79e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 64.81  E-value: 1.79e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 210 PLGISANYDRLPFAPyflfKDLVTIFLFFIVLSIFV-----FFMPNALGDSenyvmANPMQTPPAIVPEWYLLPFYAILR 284
Cdd:COG5679   20 EKGMGHNYYGEPAWP----NDLLYIFPVVILGTIALciglaVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILR 90

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 322422442 285 SIPNKLLGVIAMFAAILALMAMPLTD-LSKLRGVQFRPLSkIAFFIFVANLLVLMQIGA 342
Cdd:COG5679   91 VVPNKLLGIVMMAAIPLGLMLVPFIEnVNKFQNPFRRPVA-TAVFLFGTLVTLWLGIGA 148
petD CHL00058
cytochrome b6/f complex subunit IV
 249-342 9.62e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 62.71  E-value: 9.62e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442 249 PNALGDSenyvmANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFAAILALMAMP-LTDLSKLRGVQFRPLSkIAF 327
Cdd:CHL00058  59 PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPfLENVNKFQNPFRRPVA-TTV 132

                         90
                 ....*....|....*
gi 322422442 328 FIFVANLLVLMQIGA 342
Cdd:CHL00058 133 FLIGTAVALWLGIGA 147
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 261-329 1.67e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 62.12  E-value: 1.67e-11
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 322422442  261 ANPMQTPPAIVPEWYLLPFYAILRSIPNKLLGVIAMFAAILALMAMP-LTDLSKLRGVQFRPLSKIAFFI 329
Cdd:TIGR01156  66 ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPfIENVNKFQNPFRRPVATTVFLF 135
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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