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Conserved domains on  [gi|1752387203|ref|XP_796216|]
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armadillo repeat-containing protein 7 [Strongylocentrotus purpuratus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Arm_2 super family cl27108
Armadillo-like; This domain contains armadillo-like repeats. Proteins containing this domain ...
 21-131 3.83e-03

Armadillo-like; This domain contains armadillo-like repeats. Proteins containing this domain interact with numerous other proteins, through these interactions they are involved in a wide variety of processes including carcinogenesis, control of cellular ageing and survival, regulation of circadian rhythm and lysosomal sorting of G protein-coupled receptors.


The actual alignment was detected with superfamily member pfam04826:

Pssm-ID: 461447 [Multi-domain]  Cd Length: 221  Bit Score: 37.01  E-value: 3.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752387203  21 QHLQNLVTEFQQTQDDGCREQVLANLANFAYDPLNYEHIRQLNVMDLFLDTLSEPSEKLVEFGIGGLCNLALDKENKAHI 100
Cdd:pfam04826   4 QELDKLLALLKSSEDPFIHEIALITLGNSAAYPFNQDIIRDLGGIPIIANLLSDSNPEVKEKALNALNNLSMNVENQKKI 83

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1752387203 101 laNDGVSLV-KDCLSSP-NEETVLSAITTLMYL 131
Cdd:pfam04826  84 --KVYVNQVcKDIVSSPlNSEVQLAGLKLLTNL 114
 
Name Accession Description Interval E-value
Arm_2 pfam04826
Armadillo-like; This domain contains armadillo-like repeats. Proteins containing this domain ...
 21-131 3.83e-03

Armadillo-like; This domain contains armadillo-like repeats. Proteins containing this domain interact with numerous other proteins, through these interactions they are involved in a wide variety of processes including carcinogenesis, control of cellular ageing and survival, regulation of circadian rhythm and lysosomal sorting of G protein-coupled receptors.


Pssm-ID: 461447 [Multi-domain]  Cd Length: 221  Bit Score: 37.01  E-value: 3.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752387203  21 QHLQNLVTEFQQTQDDGCREQVLANLANFAYDPLNYEHIRQLNVMDLFLDTLSEPSEKLVEFGIGGLCNLALDKENKAHI 100
Cdd:pfam04826   4 QELDKLLALLKSSEDPFIHEIALITLGNSAAYPFNQDIIRDLGGIPIIANLLSDSNPEVKEKALNALNNLSMNVENQKKI 83

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1752387203 101 laNDGVSLV-KDCLSSP-NEETVLSAITTLMYL 131
Cdd:pfam04826  84 --KVYVNQVcKDIVSSPlNSEVQLAGLKLLTNL 114
 
Name Accession Description Interval E-value
Arm_2 pfam04826
Armadillo-like; This domain contains armadillo-like repeats. Proteins containing this domain ...
 21-131 3.83e-03

Armadillo-like; This domain contains armadillo-like repeats. Proteins containing this domain interact with numerous other proteins, through these interactions they are involved in a wide variety of processes including carcinogenesis, control of cellular ageing and survival, regulation of circadian rhythm and lysosomal sorting of G protein-coupled receptors.


Pssm-ID: 461447 [Multi-domain]  Cd Length: 221  Bit Score: 37.01  E-value: 3.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1752387203  21 QHLQNLVTEFQQTQDDGCREQVLANLANFAYDPLNYEHIRQLNVMDLFLDTLSEPSEKLVEFGIGGLCNLALDKENKAHI 100
Cdd:pfam04826   4 QELDKLLALLKSSEDPFIHEIALITLGNSAAYPFNQDIIRDLGGIPIIANLLSDSNPEVKEKALNALNNLSMNVENQKKI 83

                          90       100       110
                  ....*....|....*....|....*....|...
gi 1752387203 101 laNDGVSLV-KDCLSSP-NEETVLSAITTLMYL 131
Cdd:pfam04826  84 --KVYVNQVcKDIVSSPlNSEVQLAGLKLLTNL 114
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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