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Conserved domains on  [gi|2245593835|ref|XP_048263962|]
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C-terminal-binding protein isoform X1 [Bombus terrestris]

Protein Classification

C-terminal binding protein( domain architecture ID 10143094)

C-terminal binding protein (CtBP) functions as a transcriptional regulator by tethering chromatin remodeling proteins, such as histone deacetylases, histone methyl transferases, and histone demethylases, to DNA-bound transcription factors; CtBP may also have NAD-dependent dehydrogenase activity

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CtBP_dh cd05299
C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related ...
29-352 2.78e-154

C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor; The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity.


:

Pssm-ID: 240624 [Multi-domain]  Cd Length: 312  Bit Score: 440.80  E-value: 2.78e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  29 PLVALLDGR--DCSIEMPILKDvATVAFCDAQS--TSEIHEKVlNEAVGALMWHTIIlTKEDLEKFKTLRIIVRIGSGVD 104
Cdd:cd05299     1 PKVVITDYDfpDLDIEREVLEE-AGVELVDAQSrtEDELIEAA-ADADALLVQYAPV-TAEVIEALPRLKVIVRYGVGVD 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 105 NIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGpeqvreAATGCARIRGDTLGIVGLG 184
Cdd:cd05299    78 NVDVAAATERGIPVCNVPDYCTEEVADHALALILALARKLPFLDRAVRAGGWDWT------VGGPIRRLRGLTLGLVGFG 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 185 RIGSAVALRAKAFGFTVIFYDPYLPDGIEkSLGLNRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVN 264
Cdd:cd05299   152 RIGRAVAKRAKAFGFRVIAYDPYVPDGVA-ALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVN 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 265 TARGGLVDDDALAAALKQGRIRAAALDVHENEPYNVFQgqssqcPLKDAPNLLCTPHAAFYSDASCTELREMAASEIRRA 344
Cdd:cd05299   231 TARGGLVDEAALARALKSGRIAGAALDVLEEEPPPADS------PLLSAPNVILTPHAAWYSEESLAELRRKAAEEVVRV 304

                  ....*...
gi 2245593835 345 IVGRIPDC 352
Cdd:cd05299   305 LRGEPPRN 312
 
Name Accession Description Interval E-value
CtBP_dh cd05299
C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related ...
29-352 2.78e-154

C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor; The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity.


Pssm-ID: 240624 [Multi-domain]  Cd Length: 312  Bit Score: 440.80  E-value: 2.78e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  29 PLVALLDGR--DCSIEMPILKDvATVAFCDAQS--TSEIHEKVlNEAVGALMWHTIIlTKEDLEKFKTLRIIVRIGSGVD 104
Cdd:cd05299     1 PKVVITDYDfpDLDIEREVLEE-AGVELVDAQSrtEDELIEAA-ADADALLVQYAPV-TAEVIEALPRLKVIVRYGVGVD 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 105 NIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGpeqvreAATGCARIRGDTLGIVGLG 184
Cdd:cd05299    78 NVDVAAATERGIPVCNVPDYCTEEVADHALALILALARKLPFLDRAVRAGGWDWT------VGGPIRRLRGLTLGLVGFG 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 185 RIGSAVALRAKAFGFTVIFYDPYLPDGIEkSLGLNRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVN 264
Cdd:cd05299   152 RIGRAVAKRAKAFGFRVIAYDPYVPDGVA-ALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVN 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 265 TARGGLVDDDALAAALKQGRIRAAALDVHENEPYNVFQgqssqcPLKDAPNLLCTPHAAFYSDASCTELREMAASEIRRA 344
Cdd:cd05299   231 TARGGLVDEAALARALKSGRIAGAALDVLEEEPPPADS------PLLSAPNVILTPHAAWYSEESLAELRRKAAEEVVRV 304

                  ....*...
gi 2245593835 345 IVGRIPDC 352
Cdd:cd05299   305 LRGEPPRN 312
LdhA COG1052
Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase [Energy production and conversion, ...
51-359 1.30e-101

Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase [Energy production and conversion, Coenzyme transport and metabolism, General function prediction only]; Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase is part of the Pathway/BioSystem: Pyridoxal phosphate biosynthesis


Pssm-ID: 440672 [Multi-domain]  Cd Length: 316  Bit Score: 306.63  E-value: 1.30e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  51 TVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVA 130
Cdd:COG1052    25 EVTVYEDETSPEELAERAAGADAVITNGKDPIDAEVLEALPGLKLIANRGVGYDNIDLAAAKERGITVTNTPGYLTEAVA 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 131 DTTLCLILNLYRRTYWLANMVREGK-KFTGPEQVREaatgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLP 209
Cdd:COG1052   105 EHAVALLLALARRIVEADRRVRAGDwSWSPGLLGRD-------LSGKTLGIIGLGRIGQAVARRAKGFGMKVLYYDRSPK 177
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 210 DGIEKsLGLNRVyTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAA 289
Cdd:COG1052   178 PEVAE-LGAEYV-SLDELLAESDIVSLHCPLTPETRHLINAEELALMKPGAILINTARGGLVDEAALIEALKSGRIAGAG 255
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 290 LDVHENEPYNVFQgqssqcPLKDAPNLLCTPHAAFYSDASCTELREMAASEIRRAIVGRIPdclRNCVNK 359
Cdd:COG1052   256 LDVFEEEPPPPDH------PLLSLPNVVLTPHIASATEEAREAMAELALDNLLAFLAGEPP---PNPVNP 316
2-Hacid_dh pfam00389
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; This family represents the ...
31-358 1.08e-85

D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain.


Pssm-ID: 425656 [Multi-domain]  Cd Length: 311  Bit Score: 265.69  E-value: 1.08e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  31 VALLDGRdCSIEMPILKDvATVAFCDAQSTSEIHEKVlnEAVGALMWHTII-LTKEDLEKFKTLRIIVRIGSGVDNIDVK 109
Cdd:pfam00389   1 VLILDPL-SPEALELLKE-GEVEVHDELLTEELLEKA--KDADALIVRSRTkVTAEVLEAAPKLKVIGRAGVGVDNVDLD 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 110 AAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQVREaatgcarIRGDTLGIVGLGRIGSA 189
Cdd:pfam00389  77 AATERGILVTNAPGYNTESVAELTIGLILALARRIPEADASVREGKWKKSGLIGLE-------LYGKTLGVIGGGGIGGG 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 190 VALRAKAFGFTVIFYDPYLPDGIEKSLGlnRVYTLQDLLFQS-----DCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVN 264
Cdd:pfam00389 150 VAAIAKAFGMGVVAYDPYPNPERAEAGG--VEVLSLLLLLLDlpesdDVLTVNPLTTMKTGVIIINEARGMLKDAVAIIN 227
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 265 TARGGLVDDDALAAALKQGRIRAAALDVHENEPyNVFQgqssqcPLKDAPNLLCTPHAAFYSDASCTELREMAASEIRRA 344
Cdd:pfam00389 228 AAGGGVIDEAALDALLEEGIAAAADLDVEEEPP-PVDS------PLLDLPNVILTPHIGGATEEAQERIAEEAAENILAF 300
                         330
                  ....*....|....
gi 2245593835 345 IVGRIPdclRNCVN 358
Cdd:pfam00389 301 LDGGPP---ANAVN 311
PGDH TIGR01327
D-3-phosphoglycerate dehydrogenase; This model represents a long form of D-3-phosphoglycerate ...
82-358 3.62e-65

D-3-phosphoglycerate dehydrogenase; This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. [Amino acid biosynthesis, Serine family]


Pssm-ID: 273556 [Multi-domain]  Cd Length: 525  Bit Score: 219.12  E-value: 3.62e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREG----KKF 157
Cdd:TIGR01327  52 VTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGewdrKAF 131
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 158 TGPEqvreaatgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLPDGIEKSLGLNRVYTLQDLLFQSDCVSLH 237
Cdd:TIGR01327 132 MGTE-----------LYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVH 200
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 238 CTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPynvfqgqSSQCPLKDAPNLL 317
Cdd:TIGR01327 201 TPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEP-------PTDNPLFDLDNVI 273
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 2245593835 318 CTPHAAfysdASCTELRE----MAASEIRRAIVGripDCLRNCVN 358
Cdd:TIGR01327 274 ATPHLG----ASTREAQEnvatQVAEQVLDALKG---LPVPNAVN 311
PRK08410 PRK08410
D-2-hydroxyacid dehydrogenase;
31-347 1.71e-57

D-2-hydroxyacid dehydrogenase;


Pssm-ID: 181414 [Multi-domain]  Cd Length: 311  Bit Score: 192.51  E-value: 1.71e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  31 VALLDGR---DCSIEmpILKDVATVAFCDAQSTSEIHEKVLNEAVgaLMWHTIILTKEDLEKFKTLRIIVRIGSGVDNID 107
Cdd:PRK08410    3 IVILDAKtlgDKDLS--VFEEFGDFQIYPTTSPEEVIERIKDANI--IITNKVVIDKEVLSQLPNLKLICITATGTNNVD 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 108 VKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGK-----KFTGPEQVREaatgcaRIRGDTLGIVG 182
Cdd:PRK08410   79 IEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEysespIFTHISRPLG------EIKGKKWGIIG 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 183 LGRIGSAVALRAKAFGFTVIFYDPylpDGIEKSLGLNRVyTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFL 262
Cdd:PRK08410  153 LGTIGKRVAKIAQAFGAKVVYYST---SGKNKNEEYERV-SLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAIL 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 263 VNTARGGLVDDDALAAALKQGRIrAAALDVHENEP---YNVFQGqssqcpLKDAPNLLCTPHAAFYSDASCTELREMAAS 339
Cdd:PRK08410  229 INVGRGGIVNEKDLAKALDEKDI-YAGLDVLEKEPmekNHPLLS------IKNKEKLLITPHIAWASKEARKTLIEKVKE 301

                  ....*...
gi 2245593835 340 EIRRAIVG 347
Cdd:PRK08410  302 NIKDFLEG 309
 
Name Accession Description Interval E-value
CtBP_dh cd05299
C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related ...
29-352 2.78e-154

C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor; The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity.


Pssm-ID: 240624 [Multi-domain]  Cd Length: 312  Bit Score: 440.80  E-value: 2.78e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  29 PLVALLDGR--DCSIEMPILKDvATVAFCDAQS--TSEIHEKVlNEAVGALMWHTIIlTKEDLEKFKTLRIIVRIGSGVD 104
Cdd:cd05299     1 PKVVITDYDfpDLDIEREVLEE-AGVELVDAQSrtEDELIEAA-ADADALLVQYAPV-TAEVIEALPRLKVIVRYGVGVD 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 105 NIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGpeqvreAATGCARIRGDTLGIVGLG 184
Cdd:cd05299    78 NVDVAAATERGIPVCNVPDYCTEEVADHALALILALARKLPFLDRAVRAGGWDWT------VGGPIRRLRGLTLGLVGFG 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 185 RIGSAVALRAKAFGFTVIFYDPYLPDGIEkSLGLNRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVN 264
Cdd:cd05299   152 RIGRAVAKRAKAFGFRVIAYDPYVPDGVA-ALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVN 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 265 TARGGLVDDDALAAALKQGRIRAAALDVHENEPYNVFQgqssqcPLKDAPNLLCTPHAAFYSDASCTELREMAASEIRRA 344
Cdd:cd05299   231 TARGGLVDEAALARALKSGRIAGAALDVLEEEPPPADS------PLLSAPNVILTPHAAWYSEESLAELRRKAAEEVVRV 304

                  ....*...
gi 2245593835 345 IVGRIPDC 352
Cdd:cd05299   305 LRGEPPRN 312
LdhA COG1052
Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase [Energy production and conversion, ...
51-359 1.30e-101

Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase [Energy production and conversion, Coenzyme transport and metabolism, General function prediction only]; Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase is part of the Pathway/BioSystem: Pyridoxal phosphate biosynthesis


Pssm-ID: 440672 [Multi-domain]  Cd Length: 316  Bit Score: 306.63  E-value: 1.30e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  51 TVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVA 130
Cdd:COG1052    25 EVTVYEDETSPEELAERAAGADAVITNGKDPIDAEVLEALPGLKLIANRGVGYDNIDLAAAKERGITVTNTPGYLTEAVA 104
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 131 DTTLCLILNLYRRTYWLANMVREGK-KFTGPEQVREaatgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLP 209
Cdd:COG1052   105 EHAVALLLALARRIVEADRRVRAGDwSWSPGLLGRD-------LSGKTLGIIGLGRIGQAVARRAKGFGMKVLYYDRSPK 177
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 210 DGIEKsLGLNRVyTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAA 289
Cdd:COG1052   178 PEVAE-LGAEYV-SLDELLAESDIVSLHCPLTPETRHLINAEELALMKPGAILINTARGGLVDEAALIEALKSGRIAGAG 255
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 290 LDVHENEPYNVFQgqssqcPLKDAPNLLCTPHAAFYSDASCTELREMAASEIRRAIVGRIPdclRNCVNK 359
Cdd:COG1052   256 LDVFEEEPPPPDH------PLLSLPNVVLTPHIASATEEAREAMAELALDNLLAFLAGEPP---PNPVNP 316
formate_dh_like cd05198
Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase ...
31-343 2.08e-101

Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family; Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240622 [Multi-domain]  Cd Length: 302  Bit Score: 305.71  E-value: 2.08e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  31 VALLDGRDCSIEMPILKD-VATVAFCDAQSTSEIhEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVK 109
Cdd:cd05198     2 VLVLEPLFPPEALEALEAtGFEVIVADDLLADEL-EALLADADALIVSSTTPVTAEVLAKAPKLKFIQVAGAGVDNIDLD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 110 AAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKftgpeqVREAATGCARIRGDTLGIVGLGRIGSA 189
Cdd:cd05198    81 AAKKRGITVTNVPGANAEAVAEHALGLLLALLRRLPRADAAVRRGWG------WLWAGFPGYELEGKTVGIVGLGRIGQR 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 190 VALRAKAFGFTVIFYDPYLPDGIEKSLGLNRVyTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGG 269
Cdd:cd05198   155 VAKRLQAFGMKVLYYDRTRKPEPEEDLGFRVV-SLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGG 233
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2245593835 270 LVDDDALAAALKQGRIRAAALDVHENEPynvfqgQSSQCPLKDAPNLLCTPHAAFYSDASCTELREMAASEIRR 343
Cdd:cd05198   234 LVDEDALLRALKSGKIAGAALDVFEPEP------LPADHPLLELPNVILTPHIAGYTEEARERMAEIAVENLER 301
SerA COG0111
Phosphoglycerate dehydrogenase or related dehydrogenase [Coenzyme transport and metabolism]; ...
50-358 5.99e-97

Phosphoglycerate dehydrogenase or related dehydrogenase [Coenzyme transport and metabolism]; Phosphoglycerate dehydrogenase or related dehydrogenase is part of the Pathway/BioSystem: Serine biosynthesis


Pssm-ID: 439881 [Multi-domain]  Cd Length: 314  Bit Score: 294.79  E-value: 5.99e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  50 ATVAFCDAQSTSEIHEKvLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEV 129
Cdd:COG0111    23 IEVVYAPGLDEEELAEA-LADADALIVRSRTKVTAELLAAAPNLKLIGRAGAGVDNIDLAAATERGIPVTNAPGANARAV 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 130 ADTTLCLILNLYRRTYWLANMVREG----KKFTGPEqvreaatgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYD 205
Cdd:COG0111   102 AEYALALLLALARRLPEADRAQRAGrwdrSAFRGRE-----------LRGKTVGIVGLGRIGRAVARRLRAFGMRVLAYD 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 206 PYLPDGIEKSLGLNRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRI 285
Cdd:COG0111   171 PSPKPEEAADLGVGLVDSLDELLAEADVVSLHLPLTPETRGLIGAEELAAMKPGAILINTARGGVVDEDALLAALDSGRL 250
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2245593835 286 RAAALDVHENEPYnvfqgqSSQCPLKDAPNLLCTPHAAFYSDASCTELREMAASEIRRAIVGRIPdclRNCVN 358
Cdd:COG0111   251 AGAALDVFEPEPL------PADSPLWDLPNVILTPHIAGSTEEAQERAARQVAENIRRFLAGEPL---RNLVN 314
PGDH_like_2 cd12172
Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains; ...
59-344 2.70e-90

Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.


Pssm-ID: 240649 [Multi-domain]  Cd Length: 306  Bit Score: 277.45  E-value: 2.70e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  59 STSEIHEKvLNEAVGALMWHTIIlTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLIL 138
Cdd:cd12172    37 TEEELIEL-LKDADGVIAGLDPI-TEEVLAAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLML 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 139 NLYRRTYWLANMVREGK--KFTGPEqvreaatgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLPDGIEKSL 216
Cdd:cd12172   115 ALARQIPQADREVRAGGwdRPVGTE-----------LYGKTLGIIGLGRIGKAVARRLSGFGMKVLAYDPYPDEEFAKEH 183
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 217 GLNRVyTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENE 296
Cdd:cd12172   184 GVEFV-SLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILINTARGGLVDEEALYEALKSGRIAGAALDVFEEE 262
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 2245593835 297 PYnvfqgqSSQCPLKDAPNLLCTPHAAFYSDASCTELREMAASEIRRA 344
Cdd:cd12172   263 PP------PADSPLLELPNVILTPHIGASTKEAVLRMGTMAAQNVIDV 304
PGDH_4 cd12173
Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate ...
81-348 9.06e-87

Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.


Pssm-ID: 240650 [Multi-domain]  Cd Length: 304  Bit Score: 268.13  E-value: 9.06e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  81 ILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREG----KK 156
Cdd:cd12173    51 KVTAEVIEAAPRLKVIGRAGVGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALARNIPQADASLRAGkwdrKK 130
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 157 FTGPEqvreaatgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLPDGIEKSLGLnRVYTLQDLLFQSDCVSL 236
Cdd:cd12173   131 FMGVE-----------LRGKTLGIVGLGRIGREVARRARAFGMKVLAYDPYISAERAAAGGV-ELVSLDELLAEADFISL 198
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 237 HCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPynvfqgQSSQCPLKDAPNL 316
Cdd:cd12173   199 HTPLTPETRGLINAEELAKMKPGAILINTARGGIVDEAALADALKSGKIAGAALDVFEQEP------PPADSPLLGLPNV 272
                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 2245593835 317 LCTPHAAfysdASCTELRE----MAASEIRRAIVGR 348
Cdd:cd12173   273 ILTPHLG----ASTEEAQErvavDAAEQVLAVLAGE 304
2-Hacid_dh pfam00389
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; This family represents the ...
31-358 1.08e-85

D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain.


Pssm-ID: 425656 [Multi-domain]  Cd Length: 311  Bit Score: 265.69  E-value: 1.08e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  31 VALLDGRdCSIEMPILKDvATVAFCDAQSTSEIHEKVlnEAVGALMWHTII-LTKEDLEKFKTLRIIVRIGSGVDNIDVK 109
Cdd:pfam00389   1 VLILDPL-SPEALELLKE-GEVEVHDELLTEELLEKA--KDADALIVRSRTkVTAEVLEAAPKLKVIGRAGVGVDNVDLD 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 110 AAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEQVREaatgcarIRGDTLGIVGLGRIGSA 189
Cdd:pfam00389  77 AATERGILVTNAPGYNTESVAELTIGLILALARRIPEADASVREGKWKKSGLIGLE-------LYGKTLGVIGGGGIGGG 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 190 VALRAKAFGFTVIFYDPYLPDGIEKSLGlnRVYTLQDLLFQS-----DCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVN 264
Cdd:pfam00389 150 VAAIAKAFGMGVVAYDPYPNPERAEAGG--VEVLSLLLLLLDlpesdDVLTVNPLTTMKTGVIIINEARGMLKDAVAIIN 227
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 265 TARGGLVDDDALAAALKQGRIRAAALDVHENEPyNVFQgqssqcPLKDAPNLLCTPHAAFYSDASCTELREMAASEIRRA 344
Cdd:pfam00389 228 AAGGGVIDEAALDALLEEGIAAAADLDVEEEPP-PVDS------PLLDLPNVILTPHIGGATEEAQERIAEEAAENILAF 300
                         330
                  ....*....|....
gi 2245593835 345 IVGRIPdclRNCVN 358
Cdd:pfam00389 301 LDGGPP---ANAVN 311
2-Hacid_dh_11 cd12175
Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; ...
79-350 9.01e-81

Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240652 [Multi-domain]  Cd Length: 311  Bit Score: 252.88  E-value: 9.01e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  79 TIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFt 158
Cdd:cd12175    52 RKVIDAELLAAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLALLRRLPEADRELRAGRWG- 130
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 159 gpeqvREAATGCARIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPY-LPDGIEKSLGLNRVyTLQDLLFQSDCVSLH 237
Cdd:cd12175   131 -----RPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGVEVIYYDRFrDPEAEEKDLGVRYV-ELDELLAESDVVSLH 204
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 238 CTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPYNvfqgQSSqcPLKDAPNLL 317
Cdd:cd12175   205 VPLTPETRHLIGAEELAAMKPGAILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQEPLP----PDD--PLLRLDNVI 278
                         250       260       270
                  ....*....|....*....|....*....|...
gi 2245593835 318 CTPHAAFYSDASCTELREMAASEIRRAIVGRIP 350
Cdd:cd12175   279 LTPHIAGVTDESYQRMAAIVAENIARLLRGEPP 311
GDH cd05301
D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH); D-glycerate dehydrogenase (GDH, ...
43-321 9.96e-77

D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH); D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240626 [Multi-domain]  Cd Length: 309  Bit Score: 242.30  E-value: 9.96e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  43 MPILKDVATVAFCD---AQSTSEIHEKVlNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVC 119
Cdd:cd05301    14 LALLREGFEVEVWDedrPLPREELLEAA-KGADGLLCTLTDKIDAELLDAAPPLKVIANYSVGYDHIDVDAAKARGIPVT 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 120 NVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGK-KFTGPEQVreaaTGcARIRGDTLGIVGLGRIGSAVALRAKAFG 198
Cdd:cd05301    93 NTPDVLTDATADLAFALLLAAARRVVEGDRFVRAGEwKGWSPTLL----LG-TDLHGKTLGIVGMGRIGQAVARRAKGFG 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 199 FTVIFYDPYLPDGIEKSLGLNRVyTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAA 278
Cdd:cd05301   168 MKILYHNRSRKPEAEEELGARYV-SLDELLAESDFVSLHCPLTPETRHLINAERLALMKPTAILINTARGGVVDEDALVE 246
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 2245593835 279 ALKQGRIRAAALDVHENEPYNVFQgqssqcPLKDAPNLLCTPH 321
Cdd:cd05301   247 ALKSGKIAGAGLDVFEPEPLPADH------PLLTLPNVVLLPH 283
2-Hacid_dh_4 cd12162
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
80-342 7.32e-75

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240639 [Multi-domain]  Cd Length: 307  Bit Score: 237.74  E-value: 7.32e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  80 IILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGK---- 155
Cdd:cd12162    53 VVLDAEVLAQLPNLKLIGVLATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHNDVVKAGEwqks 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 156 ----KFTGPeqVREaatgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYlpdgIEKSLGLNRVyTLQDLLFQS 231
Cdd:cd12162   133 pdfcFWDYP--IIE-------LAGKTLGIIGYGNIGQAVARIARAFGMKVLFAERK----GAPPLREGYV-SLDELLAQS 198
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 232 DCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPynvfqgQSSQCPL- 310
Cdd:cd12162   199 DVISLHCPLTPETRNLINAEELAKMKPGAILINTARGGLVDEQALADALNSGKIAGAGLDVLSQEP------PRADNPLl 272
                         250       260       270
                  ....*....|....*....|....*....|..
gi 2245593835 311 KDAPNLLCTPHAAFYSDASCTELREMAASEIR 342
Cdd:cd12162   273 KAAPNLIITPHIAWASREARQRLMDILVDNIK 304
LDH_like cd01619
D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; D-Lactate ...
37-335 1.40e-74

D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240620 [Multi-domain]  Cd Length: 323  Bit Score: 237.58  E-value: 1.40e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  37 RDCSIEMPILKDV-ATVAFCDAQSTSEIHEKVLNEAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELG 115
Cdd:cd01619    11 DELEIEKEILKAGgVDVEIVTYLLNDDETAELAKGADAILTAFTDKIDAELLDKAPGLKFISLRATGYDNIDLDYAKELG 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 116 IAVCNVPGYGVEEVADTTLCLILNLYRRTYwlANMVREGKKftgpeQVREAATGCARIRGDTLGIVGLGRIGSAVALRAK 195
Cdd:cd01619    91 IGVTNVPEYSPNAVAEHTIALILALLRNRK--YIDERDKNQ-----DLQDAGVIGRELEDQTVGVVGTGKIGRAVAQRAK 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 196 AFGFTVIFYDPYLPDGIEKSLGlnRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDA 275
Cdd:cd01619   164 GFGMKVIAYDPFRNPELEDKGV--KYVSLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIIINTARGSLVDTEA 241
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2245593835 276 LAAALKQGRIRAAALDVHENEP---YNVFQGQSSQ----CPLKDAPNLLCTPHAAFYSDASCTELRE 335
Cdd:cd01619   242 LIEALDSGKIFGAGLDVLEDETpdlLKDLEGEIFKdalnALLGRRPNVIITPHTAFYTDDALKNMVE 308
PGDH_2 cd05303
Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains; Phosphoglycerate ...
82-321 2.75e-71

Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains; Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.


Pssm-ID: 240628 [Multi-domain]  Cd Length: 301  Bit Score: 228.19  E-value: 2.75e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREG----KKF 157
Cdd:cd05303    53 VTKEVIDAAKNLKIIARAGVGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRANREMKLGkwnkKKY 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 158 TGPEqvreaatgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLPDGIEKSLGLNRVyTLQDLLFQSDCVSLH 237
Cdd:cd05303   133 KGIE-----------LRGKTLGIIGFGRIGREVAKIARALGMNVIAYDPYPKDEQAVELGVKTV-SLEELLKNSDFISLH 200
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 238 CTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPYNVFQgqssqcpLKDAPNLL 317
Cdd:cd05303   201 VPLTPETKHMINKKELELMKDGAIIINTSRGGVIDEEALLEALKSGKLAGAALDVFENEPPPGSK-------LLELPNVS 273

                  ....
gi 2245593835 318 CTPH 321
Cdd:cd05303   274 LTPH 277
2-Hacid_dh_13 cd12178
Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; ...
83-358 2.86e-71

Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240655 [Multi-domain]  Cd Length: 317  Bit Score: 228.66  E-value: 2.86e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  83 TKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKK------ 156
Cdd:cd12178    56 DKEIIDAAKNLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALARRIAEGDRLMRRGGFlgwapl 135
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 157 -FTGPEqvreaatgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPY-LPDGIEKSLGLNRVyTLQDLLFQSDCV 234
Cdd:cd12178   136 fFLGHE-----------LAGKTLGIIGMGRIGQAVARRAKAFGMKILYYNRHrLSEETEKELGATYV-DLDELLKESDFV 203
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 235 SLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPYnVFQGqssqcpLKDAP 314
Cdd:cd12178   204 SLHAPYTPETHHLIDAAAFKLMKPTAYLINAARGPLVDEKALVDALKTGEIAGAALDVFEFEPE-VSPE------LKKLD 276
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 2245593835 315 NLLCTPHAAFYSDASCTELREMAASEIRRAIVGRIPDclrNCVN 358
Cdd:cd12178   277 NVILTPHIGNATVEARDAMAKEAADNIISFLEGKRPK---NIVN 317
Mand_dh_like cd12168
D-Mandelate Dehydrogenase-like dehydrogenases; D-Mandelate dehydrogenase (D-ManDH), identified ...
90-347 2.45e-70

D-Mandelate Dehydrogenase-like dehydrogenases; D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240645 [Multi-domain]  Cd Length: 321  Bit Score: 226.27  E-value: 2.45e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  90 FKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKKFTGPEqvreaATG 169
Cdd:cd12168    74 PPSLKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATADTALFLILGALRNFSRAERSARAGKWRGFLD-----LTL 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 170 CARIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPY-LPDGIEKSLGLNRVyTLQDLLFQSDCVSLHCTLNEHNHHLI 248
Cdd:cd12168   149 AHDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNRSrLPEELEKALATYYV-SLDELLAQSDVVSLNCPLTAATRHLI 227
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 249 NEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPyNVFQGqssqcpLKDAPNLLCTPHAAFYSDA 328
Cdd:cd12168   228 NKKEFAKMKDGVIIVNTARGAVIDEDALVDALESGKVASAGLDVFENEP-EVNPG------LLKMPNVTLLPHMGTLTVE 300
                         250
                  ....*....|....*....
gi 2245593835 329 SCTELREMAASEIRRAIVG 347
Cdd:cd12168   301 TQEKMEELVLENIEAFLET 319
2-Hacid_dh_C pfam02826
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; This domain is inserted ...
134-323 9.38e-69

D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.


Pssm-ID: 427007 [Multi-domain]  Cd Length: 178  Bit Score: 217.36  E-value: 9.38e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 134 LCLILNLYRRTYWLANMVREGKKftgpeqVREAATGCARIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLPDGIE 213
Cdd:pfam02826   1 LALLLALARRIPEADRQVRAGRW------ASPDALLGRELSGKTVGIIGLGRIGRAVAKRLKAFGMKVIAYDRYPKPEEE 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 214 KSLGLNRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVH 293
Cdd:pfam02826  75 EEELGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVF 154
                         170       180       190
                  ....*....|....*....|....*....|
gi 2245593835 294 ENEPYnvfqgqSSQCPLKDAPNLLCTPHAA 323
Cdd:pfam02826 155 EPEPL------PADHPLLDLPNVILTPHIA 178
2-Hacid_dh_10 cd12171
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
62-343 4.42e-67

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240648 [Multi-domain]  Cd Length: 310  Bit Score: 217.41  E-value: 4.42e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  62 EIHEKVLNEAVGA--LMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILN 139
Cdd:cd12171    35 EPEEELLEALKDAdiLITHFAPVTKKVIEAAPKLKLIGVCRGGPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLMLA 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 140 LYRRT----YWLANMVREGK----KFTGPEqvreaatgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLPDG 211
Cdd:cd12171   115 ETRNIarahAALKDGEWRKDyynyDGYGPE-----------LRGKTVGIVGFGAIGRRVAKRLKAFGAEVLVYDPYVDPE 183
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 212 IEKSLGLNRVyTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALD 291
Cdd:cd12171   184 KIEADGVKKV-SLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARAGLVDEDALIEALEEGKIGGAALD 262
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2245593835 292 VHENEPYnvfqgqSSQCPLKDAPNLLCTPHAAfysDASC-TELR--EMAASEIRR 343
Cdd:cd12171   263 VFPEEPL------PADHPLLKLDNVTLTPHIA---GATRdVAERspEIIAEELKR 308
LDH_like_1 cd12187
D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains; ...
82-348 3.29e-66

D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains; D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240663 [Multi-domain]  Cd Length: 329  Bit Score: 215.99  E-value: 3.29e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREG----KKF 157
Cdd:cd12187    53 LDAEVLEKLPRLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALSRKLREAIERTRRGdfsqAGL 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 158 TGPEqvreaatgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLPDGIEKSLGLnRVYTLQDLLFQSDCVSLH 237
Cdd:cd12187   133 RGFE-----------LAGKTLGVVGTGRIGRRVARIARGFGMKVLAYDVVPDEELAERLGF-RYVSLEELLQESDIISLH 200
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 238 CTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEP------YNVFQGQSSQC--- 308
Cdd:cd12187   201 VPYTPQTHHLINRENFALMKPGAVLINTARGAVVDTEALVRALKEGKLAGAGLDVLEQEEvlreeaELFREDVSPEDlkk 280
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 2245593835 309 -----PLKDAPNLLCTPHAAFYSDASCTELREMAASEIRRAIVGR 348
Cdd:cd12187   281 lladhALLRKPNVIITPHVAYNTKEALERILDTTVENIKAFAAGQ 325
2-Hacid_dh_12 cd12177
Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; ...
32-355 1.13e-65

Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240654 [Multi-domain]  Cd Length: 321  Bit Score: 214.11  E-value: 1.13e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  32 ALLDGRDCSIEMPILKDVATVAFCDAQSTseIHEKVLNEAvgaLMWHTII-------LTKEDLEKFKTLRIIVRIGSGVD 104
Cdd:cd12177     7 SSSFGQYFPEHIQRLKKIGYVDRFEVPPD--ISGKALAEK---LKGYDIIiasvtpnFDKEFFEYNDGLKLIARHGIGYD 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 105 NIDVKAAGELGIAVCNVPGYG-VEEVADTTLCLILNLYRRTYWLANMVREGK-----KFTGPEqvreaatgcarIRGDTL 178
Cdd:cd12177    82 NVDLKAATEHGVIVTRVPGAVeRDAVAEHAVALILTVLRKINQASEAVKEGKwteraNFVGHE-----------LSGKTV 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 179 GIVGLGRIGSAVA-LRAKAFGFTVIFYDPYLPDGIEKSLGLNRVyTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMR 257
Cdd:cd12177   151 GIIGYGNIGSRVAeILKEGFNAKVLAYDPYVSEEVIKKKGAKPV-SLEELLAESDIISLHAPLTEETYHMINEKAFSKMK 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 258 PGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPYNvfqgqsSQCPLKDAPNLLCTPHAAFYSDASCTELREMA 337
Cdd:cd12177   230 KGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEPIK------ADHPLLHYENVVITPHIGAYTYESLYGMGEKV 303
                         330
                  ....*....|....*...
gi 2245593835 338 ASEIRRAIVGRIPDCLRN 355
Cdd:cd12177   304 VDDIEDFLAGKEPKGILN 321
PGDH TIGR01327
D-3-phosphoglycerate dehydrogenase; This model represents a long form of D-3-phosphoglycerate ...
82-358 3.62e-65

D-3-phosphoglycerate dehydrogenase; This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. [Amino acid biosynthesis, Serine family]


Pssm-ID: 273556 [Multi-domain]  Cd Length: 525  Bit Score: 219.12  E-value: 3.62e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREG----KKF 157
Cdd:TIGR01327  52 VTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGewdrKAF 131
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 158 TGPEqvreaatgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLPDGIEKSLGLNRVYTLQDLLFQSDCVSLH 237
Cdd:TIGR01327 132 MGTE-----------LYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVH 200
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 238 CTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPynvfqgqSSQCPLKDAPNLL 317
Cdd:TIGR01327 201 TPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEP-------PTDNPLFDLDNVI 273
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 2245593835 318 CTPHAAfysdASCTELRE----MAASEIRRAIVGripDCLRNCVN 358
Cdd:TIGR01327 274 ATPHLG----ASTREAQEnvatQVAEQVLDALKG---LPVPNAVN 311
PGDH_like_3 cd12174
Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains; ...
85-358 3.75e-64

Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.


Pssm-ID: 240651 [Multi-domain]  Cd Length: 305  Bit Score: 209.72  E-value: 3.75e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  85 EDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTY----WLANM--------VR 152
Cdd:cd12174    43 HDMDFAPSLKAIARAGAGVNNIDVDAASKRGIVVFNTPGANANAVAELVIAMMLALSRNIIqaikWVTNGdgddiskgVE 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 153 EGKK-FTGPEqvreaatgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLPDGIEKSLG--LNRVYTLQDLLF 229
Cdd:cd12174   123 KGKKqFVGTE-----------LRGKTLGVIGLGNIGRLVANAALALGMKVIGYDPYLSVEAAWKLSveVQRVTSLEELLA 191
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 230 QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENepynvfqgqssqCP 309
Cdd:cd12174   192 TADYITLHVPLTDETRGLINAELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLGGYVTDFPEP------------AL 259
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2245593835 310 LKDAPNLLCTPHAAfysdASCTELRE----MAASEIRRAI-VGRIPdclrNCVN 358
Cdd:cd12174   260 LGHLPNVIATPHLG----ASTEEAEEncavMAARQIMDFLeTGNIT----NSVN 305
LDH cd12186
D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding ...
78-337 4.89e-64

D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains; D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240662  Cd Length: 329  Bit Score: 210.08  E-value: 4.89e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  78 HTIILTKEDLEKFK-------TLRIIvrigsGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANM 150
Cdd:cd12186    52 QTLPYDEEVYEKLAeygikqiALRSA-----GVDMIDLDLAKENGLKITNVPAYSPRAIAEFAVTQALNLLRNTPEIDRR 126
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 151 VREGkkftgpeQVREAATGCAR-IRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLPDGIEKsLGLNRVyTLQDLLF 229
Cdd:cd12186   127 VAKG-------DFRWAPGLIGReIRDLTVGIIGTGRIGSAAAKIFKGFGAKVIAYDPYPNPELEK-FLLYYD-SLEDLLK 197
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 230 QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENE-PYnvFQGQSSQC 308
Cdd:cd12186   198 QADIISLHVPLTKENHHLINAEAFAKMKDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENEtGY--FNKDWSGK 275
                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 2245593835 309 PLKDA--------PNLLCTPHAAFYSDASCTELREMA 337
Cdd:cd12186   276 EIEDEvlkeliamPNVLITPHIAFYTDTAVKNMVEIS 312
LDH_like_2 cd12183
D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; D-Lactate ...
102-325 8.38e-63

D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240659  Cd Length: 328  Bit Score: 206.91  E-value: 8.38e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 102 GVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREG----KKFTGPEqvreaatgcarIRGDT 177
Cdd:cd12183    78 GFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLALNRKIHRAYNRVREGnfslDGLLGFD-----------LHGKT 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 178 LGIVGLGRIGSAVALRAKAFGFTVIFYDPYlPDGIEKSLGLNRVyTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMR 257
Cdd:cd12183   147 VGVIGTGKIGQAFARILKGFGCRVLAYDPY-PNPELAKLGVEYV-DLDELLAESDIISLHCPLTPETHHLINAETIAKMK 224
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2245593835 258 PGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPYNVFQGQSSQCPLKDA-------PNLLCTPHAAFY 325
Cdd:cd12183   225 DGVMLINTSRGGLIDTKALIEALKSGKIGGLGLDVYEEEAGLFFEDHSDEIIQDDVlarllsfPNVLITGHQAFF 299
GDH_like_1 cd12161
Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy ...
82-348 1.59e-62

Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family; This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240638 [Multi-domain]  Cd Length: 315  Bit Score: 205.92  E-value: 1.59e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKK---FT 158
Cdd:cd12161    59 LPGEVIEACKNLKMISVAFTGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLLRNIVPCDAAVRAGGTkagLI 138
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 159 GPEqvreaatgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLPDGIeKSLGLNRVyTLQDLLFQSDCVSLHC 238
Cdd:cd12161   139 GRE-----------LAGKTVGIVGTGAIGLRVARLFKAFGCKVLAYSRSEKEEA-KALGIEYV-SLDELLAESDIVSLHL 205
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 239 TLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEP-----YnvfqgqssqcPLKDA 313
Cdd:cd12161   206 PLNDETKGLIGKEKLALMKESAILINTARGPVVDNEALADALNEGKIAGAGIDVFDMEPplpadY----------PLLHA 275
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2245593835 314 PNLLCTPHAAFYSDASCTELREMAASEIRRAIVGR 348
Cdd:cd12161   276 PNTILTPHVAFATEEAMEKRAEIVFDNIEAWLAGK 310
PRK08410 PRK08410
D-2-hydroxyacid dehydrogenase;
31-347 1.71e-57

D-2-hydroxyacid dehydrogenase;


Pssm-ID: 181414 [Multi-domain]  Cd Length: 311  Bit Score: 192.51  E-value: 1.71e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  31 VALLDGR---DCSIEmpILKDVATVAFCDAQSTSEIHEKVLNEAVgaLMWHTIILTKEDLEKFKTLRIIVRIGSGVDNID 107
Cdd:PRK08410    3 IVILDAKtlgDKDLS--VFEEFGDFQIYPTTSPEEVIERIKDANI--IITNKVVIDKEVLSQLPNLKLICITATGTNNVD 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 108 VKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGK-----KFTGPEQVREaatgcaRIRGDTLGIVG 182
Cdd:PRK08410   79 IEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEysespIFTHISRPLG------EIKGKKWGIIG 152
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 183 LGRIGSAVALRAKAFGFTVIFYDPylpDGIEKSLGLNRVyTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFL 262
Cdd:PRK08410  153 LGTIGKRVAKIAQAFGAKVVYYST---SGKNKNEEYERV-SLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAIL 228
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 263 VNTARGGLVDDDALAAALKQGRIrAAALDVHENEP---YNVFQGqssqcpLKDAPNLLCTPHAAFYSDASCTELREMAAS 339
Cdd:PRK08410  229 INVGRGGIVNEKDLAKALDEKDI-YAGLDVLEKEPmekNHPLLS------IKNKEKLLITPHIAWASKEARKTLIEKVKE 301

                  ....*...
gi 2245593835 340 EIRRAIVG 347
Cdd:PRK08410  302 NIKDFLEG 309
PRK13243 PRK13243
glyoxylate reductase; Reviewed
84-360 3.69e-56

glyoxylate reductase; Reviewed


Pssm-ID: 183914  Cd Length: 333  Bit Score: 190.00  E-value: 3.69e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  84 KEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRtywlanmVREGKKFTGPEQV 163
Cdd:PRK13243   59 CEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARR-------LVEADHFVRSGEW 131
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 164 REAATGC-------ARIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLPDGIEKSLGLNRVyTLQDLLFQSDCVSL 236
Cdd:PRK13243  132 KRRGVAWhplmflgYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYR-PLEELLRESDFVSL 210
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 237 HCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPYNvfqgqssQCPLKDAPNL 316
Cdd:PRK13243  211 HVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-------NEELFSLKNV 283
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 2245593835 317 LCTPHAAFYSDASCTELREMAASEIRRAIVGRIPDCLrncVNKE 360
Cdd:PRK13243  284 VLAPHIGSATFEAREGMAELVAENLIAFKRGEVPPTL---VNRE 324
PRK06487 PRK06487
2-hydroxyacid dehydrogenase;
56-355 4.00e-56

2-hydroxyacid dehydrogenase;


Pssm-ID: 180588 [Multi-domain]  Cd Length: 317  Bit Score: 189.14  E-value: 4.00e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  56 DAQSTSEIHEKvLNEAVGALMwHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLC 135
Cdd:PRK06487   32 DATTPEQVAER-LRGAQVAIS-NKVALDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLA 109
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 136 LILNLYRRTYWLANMVREGK-----KFTGPEqvreaaTGCARIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYD----P 206
Cdd:PRK06487  110 LLLALATRLPDYQQAVAAGRwqqssQFCLLD------FPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQlpgrP 183
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 207 YLPDGIEkslglnrvytLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIR 286
Cdd:PRK06487  184 ARPDRLP----------LDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLG 253
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2245593835 287 AAALDVHENEPynvfqgQSSQCPL--KDAPNLLCTPHAAFysdasctelremAASEIRRAIVGRIPDCLRN 355
Cdd:PRK06487  254 GAATDVLSVEP------PVNGNPLlaPDIPRLIVTPHSAW------------GSREARQRIVGQLAENARA 306
PGDH_like_1 cd12169
Putative D-3-Phosphoglycerate Dehydrogenases; Phosphoglycerate dehydrogenases (PGDHs) catalyze ...
87-328 9.07e-55

Putative D-3-Phosphoglycerate Dehydrogenases; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.


Pssm-ID: 240646 [Multi-domain]  Cd Length: 308  Bit Score: 185.41  E-value: 9.07e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  87 LEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGyGVEEVADTTLCLILNLYRRTYWLANMVREGkkftgpeqvREA 166
Cdd:cd12169    64 LERLPNLKLLVTTGMRNASIDLAAAKERGIVVCGTGG-GPTATAELTWALILALARNLPEEDAALRAG---------GWQ 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 167 ATGCARIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLPDGIEKSLGLNRVYTLQDLLFQSDCVSLHCTLNEHNHH 246
Cdd:cd12169   134 TTLGTGLAGKTLGIVGLGRIGARVARIGQAFGMRVIAWSSNLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRG 213
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 247 LINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPynVFQGQssqcPLKDAPNLLCTPH----- 321
Cdd:cd12169   214 LVGAEDLALMKPTALLVNTSRGPLVDEGALLAALRAGRIAGAALDVFDVEP--LPADH----PLRGLPNVLLTPHigyvt 287
                         250
                  ....*....|.
gi 2245593835 322 ----AAFYSDA 328
Cdd:cd12169   288 eeayEGFYGQA 298
HGDH_LDH_like cd12185
Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, ...
78-342 3.25e-54

Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains; This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240661  Cd Length: 322  Bit Score: 184.33  E-value: 3.25e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  78 HTIILTKEDLEKFKTL-------RIIvrigsGVDNIDVKAAGELGIAVCNVPgYGVEEVADTTLCLILNLYRRTYWLanM 150
Cdd:cd12185    52 GKSKISAELLEKLKEAgvkyistRSI-----GYDHIDLDAAKELGIKVSNVT-YSPNSVADYTVMLMLMALRKYKQI--M 123
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 151 VR-EGKKFT-GPEQVREaatgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLPDGIEKslGLNRVyTLQDLL 228
Cdd:cd12185   124 KRaEVNDYSlGGLQGRE-------LRNLTVGVIGTGRIGQAVIKNLSGFGCKILAYDPYPNEEVKK--YAEYV-DLDTLY 193
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 229 FQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEP---YNVFQGQS 305
Cdd:cd12185   194 KESDIITLHTPLTEETYHLINKESIAKMKDGVIIINTARGELIDTEALIEGLESGKIGGAALDVIEGEDgiyYNDRKGDI 273
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 2245593835 306 SQCP----LKDAPNLLCTPHAAFYSDAScteLREMAASEIR 342
Cdd:cd12185   274 LSNRelaiLRSFPNVILTPHMAFYTDQA---VSDMVENSIE 311
PRK06932 PRK06932
2-hydroxyacid dehydrogenase;
80-341 1.94e-52

2-hydroxyacid dehydrogenase;


Pssm-ID: 235890 [Multi-domain]  Cd Length: 314  Bit Score: 179.61  E-value: 1.94e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  80 IILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLyrrTYWLANMVRE--GKKF 157
Cdd:PRK06932   53 VLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFAL---KHSLMGWYRDqlSDRW 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 158 TGPEQVREAATGCARIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDpylpdgiEKSLGLNRV-YT-LQDLLFQSDCVS 235
Cdd:PRK06932  130 ATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAE-------HKGASVCREgYTpFEEVLKQADIVT 202
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 236 LHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPynvfqgQSSQCPL----K 311
Cdd:PRK06932  203 LHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEP------PEKDNPLiqaaK 276
                         250       260       270
                  ....*....|....*....|....*....|
gi 2245593835 312 DAPNLLCTPHAAFYSDASCTELREMAASEI 341
Cdd:PRK06932  277 RLPNLLITPHIAWASDSAVTTLVNKVAQNI 306
2-Hacid_dh_8 cd12167
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
77-366 1.40e-51

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240644 [Multi-domain]  Cd Length: 330  Bit Score: 177.75  E-value: 1.40e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  77 WHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKK 156
Cdd:cd12167    57 WGTPPLDAELLARAPRLRAVVHAAGSVRGLVTDAVWERGILVTSAADANAEPVAEFTLAAILLALRRIPRFAAAYRAGRD 136
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 157 FTGPEQVreaatGCARIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLPDGIEKSLGLNRVyTLQDLLFQSDCVSL 236
Cdd:cd12167   137 WGWPTRR-----GGRGLYGRTVGIVGFGRIGRAVVELLRPFGLRVLVYDPYLPAAEAAALGVELV-SLDELLARSDVVSL 210
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 237 HCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRaAALDVHENEPYnvfqgqSSQCPLKDAPNL 316
Cdd:cd12167   211 HAPLTPETRGMIDARLLALMRDGATFINTARGALVDEAALLAELRSGRLR-AALDVTDPEPL------PPDSPLRTLPNV 283
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2245593835 317 LCTPHAAfysDASCTELR---EMAASEIRRAIVGRIPdclRNCVNKEYFLSST 366
Cdd:cd12167   284 LLTPHIA---GSTGDERRrlgDYALDELERFLAGEPL---LHEVTPERLARMA 330
PGDH_3 cd12176
Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate ...
82-346 3.24e-49

Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.


Pssm-ID: 240653  Cd Length: 304  Bit Score: 170.45  E-value: 3.24e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  82 LTKEDLEKFKTLriiVRIGS---GVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGkkft 158
Cdd:cd12176    54 LTEEVLEAAPKL---LAIGCfciGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIMLARRLPDRNAAAHRG---- 126
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 159 gpeQVREAATGCARIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYD--PYLPDGIEKslglnRVYTLQDLLFQSDCVSL 236
Cdd:cd12176   127 ---IWNKSATGSHEVRGKTLGIIGYGHIGSQLSVLAEALGMRVIFYDiaEKLPLGNAR-----QVSSLEELLAEADFVTL 198
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 237 HCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPYNvfQGQSSQCPLKDAPNL 316
Cdd:cd12176   199 HVPATPSTKNMIGAEEIAQMKKGAILINASRGTVVDIDALAEALRSGHLAGAAVDVFPEEPAS--NGEPFSSPLQGLPNV 276
                         250       260       270
                  ....*....|....*....|....*....|
gi 2245593835 317 LCTPHAAfysdASCTELREMAASEIRRAIV 346
Cdd:cd12176   277 ILTPHIG----GSTEEAQENIGLEVAGKLV 302
HPPR cd12156
Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase; ...
70-323 5.50e-49

Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase; Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240633 [Multi-domain]  Cd Length: 301  Bit Score: 169.96  E-value: 5.50e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  70 EAVGALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLAN 149
Cdd:cd12156    42 RIRAVVTNGETGLSAALIAALPALELIASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRIPAADR 121
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 150 MVREGKKFTGPEQVReaatgcARIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLPDGieksLGLNRVYTLQDLLF 229
Cdd:cd12156   122 FVRAGRWPKGAFPLT------RKVSGKRVGIVGLGRIGRAIARRLEAFGMEIAYHGRRPKPD----VPYRYYASLLELAA 191
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 230 QSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPyNVFQGqssqcp 309
Cdd:cd12156   192 ESDVLVVACPGGPATRHLVNAEVLEALGPDGVLVNVARGSVVDEAALIAALQEGRIAGAGLDVFENEP-NVPAA------ 264
                         250
                  ....*....|....
gi 2245593835 310 LKDAPNLLCTPHAA 323
Cdd:cd12156   265 LLDLDNVVLTPHIA 278
FDH cd05302
NAD-dependent Formate Dehydrogenase (FDH); NAD-dependent formate dehydrogenase (FDH) catalyzes ...
82-321 2.59e-47

NAD-dependent Formate Dehydrogenase (FDH); NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form.


Pssm-ID: 240627  Cd Length: 348  Bit Score: 166.73  E-value: 2.59e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRrtywlaNMVregkkfTGPE 161
Cdd:cd05302    74 MTAERIAKAKNLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILVR------NYV------PGHE 141
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 162 QVREAA---TGCAR----IRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPY-LPDGIEKSLGLNRVYTLQDLLFQSDC 233
Cdd:cd05302   142 QAIEGGwnvADVVKraydLEGKTVGTVGAGRIGLRVLRRLKPFDVHLLYYDRHrLPEEVEKELGLTRHADLEDMVSKCDV 221
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 234 VSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPynvfqgQSSQCPLKDA 313
Cdd:cd05302   222 VTINCPLHPETEGLFNKELLSKMKKGAYLVNTARGKICDREAVAEALESGHLAGYAGDVWFPQP------APKDHPWRTM 295

                  ....*...
gi 2245593835 314 PNLLCTPH 321
Cdd:cd05302   296 PNNAMTPH 303
PRK11790 PRK11790
phosphoglycerate dehydrogenase;
82-321 3.53e-44

phosphoglycerate dehydrogenase;


Pssm-ID: 236985 [Multi-domain]  Cd Length: 409  Bit Score: 159.96  E-value: 3.53e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  82 LTKEDLEKFKTLriiVRIGS---GVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTywlanmvregkkft 158
Cdd:PRK11790   65 LTEEVLAAAEKL---VAIGCfciGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGI-------------- 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 159 gPEQVREA--------ATGCARIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDpylpdgIEKSLGL-N--RVYTLQDL 227
Cdd:PRK11790  128 -PEKNAKAhrggwnksAAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYD------IEDKLPLgNarQVGSLEEL 200
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 228 LFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPYNvfQGQSSQ 307
Cdd:PRK11790  201 LAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKS--NGDPFE 278
                         250
                  ....*....|....
gi 2245593835 308 CPLKDAPNLLCTPH 321
Cdd:PRK11790  279 SPLRGLDNVILTPH 292
PTDH cd12157
Thermostable Phosphite Dehydrogenase; Phosphite dehydrogenase (PTDH), a member of the ...
59-345 4.19e-44

Thermostable Phosphite Dehydrogenase; Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain.


Pssm-ID: 240634 [Multi-domain]  Cd Length: 318  Bit Score: 157.45  E-value: 4.19e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  59 STSEIHEKVLN-EAVGALMWHTIilTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLI 137
Cdd:cd12157    34 SREELLRRCKDaDGLMAFMPDRI--DADFLDACPRLKIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLL 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 138 LNLYRRTYWLANMVREGKkFTGPEQVREAATgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPY-LPDGIEKSL 216
Cdd:cd12157   112 IGLGRHILAGDRFVRSGK-FGGWRPKFYGTG----LDGKTVGILGMGALGRAIARRLSGFGATLLYYDPHpLDQAEEQAL 186
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 217 GLNRVyTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENE 296
Cdd:cd12157   187 NLRRV-ELDELLESSDFLVLALPLTPDTLHLINAEALAKMKPGALLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFEME 265
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2245593835 297 -------PYNVFQGQssqcpLKDAPNLLCTPHAAfysdasctelreMAASEIRRAI 345
Cdd:cd12157   266 dwarpdrPRSIPQEL-----LDQHDRTVFTPHIG------------SAVDEVRLEI 304
2-Hacid_dh_6 cd12165
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
82-351 5.46e-44

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240642 [Multi-domain]  Cd Length: 314  Bit Score: 157.02  E-value: 5.46e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  82 LTKED-LEKFKTLRIIVRIGSGVDNIDVKAAGElGIAVCNVPGYGvEEVADTTLCLILNLYRRTYWLANMVREGKkftgP 160
Cdd:cd12165    49 LTKEEaLAALKRLKLIQVPSAGVDHLPLERLPE-GVVVANNHGNS-PAVAEHALALILALAKRIVEYDNDLRRGI----W 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 161 EQVREAATGCARIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYD--PYLPDGIEKSLGLNRvytLQDLLFQSDCVSLHC 238
Cdd:cd12165   123 HGRAGEEPESKELRGKTVGILGYGHIGREIARLLKAFGMRVIGVSrsPKEDEGADFVGTLSD---LDEALEQADVVVVAL 199
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 239 TLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPYNVFQGQSSQCPLKDAPNLLC 318
Cdd:cd12165   200 PLTKQTRGLIGAAELAAMKPGAILVNVGRGPVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIM 279
                         250       260       270
                  ....*....|....*....|....*....|...
gi 2245593835 319 TPHAAFYSDASCTELREMAASEIRRAIVGRIPD 351
Cdd:cd12165   280 SPHNAGWTEETFRRRIDEAAENIRRYLRGEPLL 312
HGDH_like cd12184
(R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic ...
81-327 8.87e-43

(R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains; (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240660  Cd Length: 330  Bit Score: 154.37  E-value: 8.87e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  81 ILTKEDLEKFKTLRI---IVRIgSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREgKKF 157
Cdd:cd12184    55 FADKENLEIYKEYGIkyvFTRT-VGFNHIDLEAAKELGFKMARVPSYSPNAIAELAFTLAMTLSRHTAYTASRTAN-KNF 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 158 TGPEQV--REaatgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLPDGIEKSLGLnrvYTLQDLLFQSDCVS 235
Cdd:cd12184   133 KVDPFMfsKE-------IRNSTVGIIGTGRIGLTAAKLFKGLGAKVIGYDIYPSDAAKDVVTF---VSLDELLKKSDIIS 202
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 236 LHCT-LNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPyNVFQGQSSQCPLKDA- 313
Cdd:cd12184   203 LHVPyIKGKNDKLINKEFISKMKDGAILINTARGELQDEEAILEALESGKLAGFGTDVLNNEK-EIFFKDFDGDKIEDPv 281
                         250       260
                  ....*....|....*....|..
gi 2245593835 314 --------PNLLCTPHAAFYSD 327
Cdd:cd12184   282 veklldlyPRVLLTPHIGSYTD 303
2-Hacid_dh_1 cd05300
Putative D-isomer specific 2-hydroxyacid dehydrogenase; 2-Hydroxyacid dehydrogenases catalyze ...
70-323 1.35e-41

Putative D-isomer specific 2-hydroxyacid dehydrogenase; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants.


Pssm-ID: 240625 [Multi-domain]  Cd Length: 313  Bit Score: 150.36  E-value: 1.35e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  70 EAVGALMWHTIILT----KEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPG-YGvEEVADTTLCLILNLYRRT 144
Cdd:cd05300    33 ELTEELADADVLLGnpplPELLPAAPRLRWIQSTSAGVDALLFPELLERDVVLTNARGiFG-PPIAEYVLGYMLAFARKL 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 145 YWLANMVREgKKFTGPEQVREaatgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIfydpylpdGI-----EKSLGLN 219
Cdd:cd05300   112 PRYARNQAE-RRWQRRGPVRE-------LAGKTVLIVGLGDIGREIARRAKAFGMRVI--------GVrrsgrPAPPVVD 175
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 220 RVYT---LQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENE 296
Cdd:cd05300   176 EVYTpdeLDELLPEADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDEDALIEALESGRIAGAALDVFEEE 255
                         250       260
                  ....*....|....*....|....*..
gi 2245593835 297 PYnvfqgqSSQCPLKDAPNLLCTPHAA 323
Cdd:cd05300   256 PL------PADSPLWDLPNVIITPHIS 276
2-Hacid_dh_14 cd12179
Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; ...
84-323 2.59e-41

Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240656 [Multi-domain]  Cd Length: 306  Bit Score: 149.75  E-value: 2.59e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  84 KEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKkftgpeQV 163
Cdd:cd12179    54 KEFIEKATNLKFIARAGAGLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRADQEVRNGI------WD 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 164 REAATGcARIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDpylpdgIEKSLGLNRV--YTLQDLLFQSDCVSLHCTLN 241
Cdd:cd12179   128 REGNRG-VELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIAYD------KYKNFGDAYAeqVSLETLFKEADILSLHIPLT 200
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 242 EHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEP---YNVFQGQSSQCPLKDAPNLLC 318
Cdd:cd12179   201 PETRGMVNKEFISSFKKPFYFINTARGKVVVTKDLVKALKSGKILGACLDVLEYEKasfESIFNQPEAFEYLIKSPKVIL 280

                  ....*
gi 2245593835 319 TPHAA 323
Cdd:cd12179   281 TPHIA 285
ErythrP_dh cd12158
D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains; ...
99-326 3.02e-41

D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains; D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.


Pssm-ID: 240635 [Multi-domain]  Cd Length: 343  Bit Score: 150.37  E-value: 3.02e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  99 IGS---GVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRtywlanmvregKKFTgpeqvreaatgcarIRG 175
Cdd:cd12158    61 VGTatiGTDHIDTDYLKERGIGFANAPGCNANSVAEYVLSALLVLAQR-----------QGFS--------------LKG 115
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 176 DTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLPDgIEKSLGLNrvyTLQDLLFQSDCVSLHCTLNEH----NHHLINEF 251
Cdd:cd12158   116 KTVGIVGVGNVGSRLARRLEALGMNVLLCDPPRAE-AEGDPGFV---SLEELLAEADIITLHVPLTRDgehpTYHLLDED 191
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2245593835 252 TIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPyNVFQGQSSQCplkdapnLLCTPHAAFYS 326
Cdd:cd12158   192 FLAALKPGQILINASRGAVIDNQALLALLQRGKDLRVVLDVWENEP-EIDLELLDKV-------DIATPHIAGYS 258
PRK07574 PRK07574
NAD-dependent formate dehydrogenase;
82-292 1.26e-40

NAD-dependent formate dehydrogenase;


Pssm-ID: 181041  Cd Length: 385  Bit Score: 149.82  E-value: 1.26e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRrtywlaNMVregkkfTGPE 161
Cdd:PRK07574  104 LTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVR------NYE------PSHR 171
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 162 QVREAATGCAR-------IRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPY-LPDGIEKSLGLNRVYTLQDLLFQSDC 233
Cdd:PRK07574  172 QAVEGGWNIADcvsrsydLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHrLPEEVEQELGLTYHVSFDSLVSVCDV 251
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2245593835 234 VSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDV 292
Cdd:PRK07574  252 VTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDV 310
PRK08605 PRK08605
D-lactate dehydrogenase; Validated
49-337 4.11e-39

D-lactate dehydrogenase; Validated


Pssm-ID: 181499  Cd Length: 332  Bit Score: 144.50  E-value: 4.11e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  49 VATVAFCDAQSTSEIHEkvLNEAVGALmwhtiiltkedLEKFKTLRIIVRiGSGVDNIDVKAAGELGIAVCNVPGYGVEE 128
Cdd:PRK08605   40 VEEVEGFDGLSLSQQIP--LSEAIYKL-----------LNELGIKQIAQR-SAGFDTYDLELATKYNLIISNVPSYSPES 105
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 129 VADTTLCLILNLYRRTYWLANMVREgkkftgpEQVREAATGCARIRGD-TLGIVGLGRIGSAVA-LRAKAFGFTVIFYDP 206
Cdd:PRK08605  106 IAEFTVTQAINLVRHFNQIQTKVRE-------HDFRWEPPILSRSIKDlKVAVIGTGRIGLAVAkIFAKGYGSDVVAYDP 178
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 207 YLPDGIEKSLglNRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIR 286
Cdd:PRK08605  179 FPNAKAATYV--DYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIK 256
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2245593835 287 AAALDVHENE----PYNvFQGQSSQCPLKDA----PNLLCTPHAAFYSDASCTELREMA 337
Cdd:PRK08605  257 GAALDTYEFErplfPSD-QRGQTINDPLLESlinrEDVILTPHIAFYTDAAVKNLIVDA 314
PRK15409 PRK15409
glyoxylate/hydroxypyruvate reductase GhrB;
60-358 2.37e-38

glyoxylate/hydroxypyruvate reductase GhrB;


Pssm-ID: 185307  Cd Length: 323  Bit Score: 142.20  E-value: 2.37e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  60 TSEIHEKVLNEAVGAL-MWHTIilTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLIL 138
Cdd:PRK15409   35 TVEQHAAAFAEAEGLLgSGEKV--DAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVL 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 139 NLYRRTYWLANMVREG--KKFTGPEQVreaatGCaRIRGDTLGIVGLGRIGSAVALRAKaFGFTV-IFYDPYLP-DGIEK 214
Cdd:PRK15409  113 STARRVVEVAERVKAGewTASIGPDWF-----GT-DVHHKTLGIVGMGRIGMALAQRAH-FGFNMpILYNARRHhKEAEE 185
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 215 SLGLnRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHE 294
Cdd:PRK15409  186 RFNA-RYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFE 264
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2245593835 295 NEPYNVfqgqssQCPLKDAPNLLCTPHAafysdASCT-ELR-EMAASEIRRAIVGRIPDCLRNCVN 358
Cdd:PRK15409  265 QEPLSV------DSPLLSLPNVVAVPHI-----GSAThETRyNMAACAVDNLIDALQGKVEKNCVN 319
PGDH_1 cd12155
Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family; Phosphoglycerate ...
77-327 4.16e-35

Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family; Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240632 [Multi-domain]  Cd Length: 314  Bit Score: 133.09  E-value: 4.16e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  77 WHTIILTKeDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRT-YWLANmvREGK 155
Cdd:cd12155    46 YNPDFDEL-DLAKMKNLKWIQLYSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGLkKAYKN--QKEK 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 156 KFTGPEQVREaatgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIfydpylpdGIEKS----LGLNRVYTLQDL---L 228
Cdd:cd12155   123 KWKMDSSLLE-------LYGKTILFLGTGSIGQEIAKRLKAFGMKVI--------GVNTSgrdvEYFDKCYPLEELdevL 187
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 229 FQSDCV--SLHCTlnEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPYnvfqgqSS 306
Cdd:cd12155   188 KEADIVvnVLPLT--EETHHLFDEAFFEQMKKGALFINVGRGPSVDEDALIEALKNKQIRGAALDVFEEEPL------PK 259
                         250       260
                  ....*....|....*....|.
gi 2245593835 307 QCPLKDAPNLLCTPHAAFYSD 327
Cdd:cd12155   260 DSPLWDLDNVLITPHISGVSE 280
2-Hacid_dh_15 cd12180
Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; ...
127-348 4.89e-32

Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240657  Cd Length: 308  Bit Score: 124.38  E-value: 4.89e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 127 EEVADTTLCLILNLYRRtywlanmvREGKKFTGPEQVReaATGCARIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYD- 205
Cdd:cd12180    97 EAIAEFVLAAILAAAKR--------LPEIWVKGAEQWR--REPLGSLAGSTLGIVGFGAIGQALARRALALGMRVLALRr 166
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 206 ---PYLPDGIEkslglnRVYTLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQ 282
Cdd:cd12180   167 sgrPSDVPGVE------AAADLAELFARSDHLVLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDS 240
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2245593835 283 GRIRAAALDVHENEPYnvfqgqSSQCPLKDAPNLLCTPHAAFYSDASCTELREMAASEIRRAIVGR 348
Cdd:cd12180   241 GRISLASLDVTDPEPL------PEGHPLYTHPRVRLSPHTSAIAPDGRRNLADRFLENLARYRAGQ 300
PLN02928 PLN02928
oxidoreductase family protein
82-351 6.72e-32

oxidoreductase family protein


Pssm-ID: 215501  Cd Length: 347  Bit Score: 125.18  E-value: 6.72e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  82 LTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGV---EEVADTTLCLILNLYRRTYWLANMVReGKKFT 158
Cdd:PLN02928   72 LDADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTgnaASCAEMAIYLMLGLLRKQNEMQISLK-ARRLG 150
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 159 GPeqvreaaTGCArIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFY------DPYLPDGIEKSLGLNRVY------TLQD 226
Cdd:PLN02928  151 EP-------IGDT-LFGKTVFILGYGAIGIELAKRLRPFGVKLLATrrswtsEPEDGLLIPNGDVDDLVDekggheDIYE 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 227 LLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPYNvfqgqsS 306
Cdd:PLN02928  223 FAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFD------P 296
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 2245593835 307 QCPLKDAPNLLCTPHAAFYSDASCTELREMAASEIRRAIVGRIPD 351
Cdd:PLN02928  297 DDPILKHPNVIITPHVAGVTEYSYRSMGKIVGDAALQLHAGRPLT 341
PLN02306 PLN02306
hydroxypyruvate reductase
102-347 1.48e-30

hydroxypyruvate reductase


Pssm-ID: 177941  Cd Length: 386  Bit Score: 122.27  E-value: 1.48e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 102 GVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKK-------FTGpeqvreaatgcARIR 174
Cdd:PLN02306   96 GYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYegwlphlFVG-----------NLLK 164
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 175 GDTLGIVGLGRIGSAVA-LRAKAFGFTVIFYDPYLPDGIEKSLGL---------------NRVYTLQDLLFQSDCVSLHC 238
Cdd:PLN02306  165 GQTVGVIGAGRIGSAYArMMVEGFKMNLIYYDLYQSTRLEKFVTAygqflkangeqpvtwKRASSMEEVLREADVISLHP 244
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 239 TLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPYnvfqgqsSQCPLKDAPNLLC 318
Cdd:PLN02306  245 VLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPY-------MKPGLADMKNAVV 317
                         250       260
                  ....*....|....*....|....*....
gi 2245593835 319 TPHAAFYSDASCTELREMAASEIRRAIVG 347
Cdd:PLN02306  318 VPHIASASKWTREGMATLAALNVLGKLKG 346
PRK12480 PRK12480
D-lactate dehydrogenase; Provisional
87-335 1.48e-30

D-lactate dehydrogenase; Provisional


Pssm-ID: 183550  Cd Length: 330  Bit Score: 120.79  E-value: 1.48e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  87 LEKFKTLRIIVRIgSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREgKKFTGPEQVREA 166
Cdd:PRK12480   65 LESYGIKQIAQRT-AGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQA-HDFTWQAEIMSK 142
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 167 AtgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYlPDgieKSLG-LNRVYTLQDLLFQSDCVSLHCTLNEHNH 245
Cdd:PRK12480  143 P-----VKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAY-PN---KDLDfLTYKDSVKEAIKDADIISLHVPANKESY 213
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 246 HLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENE-PYNVFQ--GQSSQCP----LKDAPNLLC 318
Cdd:PRK12480  214 HLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEaAYFTNDwtNKDIDDKtlleLIEHERILV 293
                         250
                  ....*....|....*..
gi 2245593835 319 TPHAAFYSDASCTELRE 335
Cdd:PRK12480  294 TPHIAFFSDEAVQNLVE 310
PLN03139 PLN03139
formate dehydrogenase; Provisional
77-321 1.14e-27

formate dehydrogenase; Provisional


Pssm-ID: 178684  Cd Length: 386  Bit Score: 113.79  E-value: 1.14e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  77 WHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGKk 156
Cdd:PLN03139  106 FHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGE- 184
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 157 ftgpEQVREAATGCARIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPY-LPDGIEKSLGLNRVYTLQDLLFQSDCVS 235
Cdd:PLN03139  185 ----WNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLkMDPELEKETGAKFEEDLDAMLPKCDVVV 260
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 236 LHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPynvfqgQSSQCPLKDAPN 315
Cdd:PLN03139  261 INTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQP------APKDHPWRYMPN 334

                  ....*.
gi 2245593835 316 LLCTPH 321
Cdd:PLN03139  335 HAMTPH 340
2-Hacid_dh_7 cd12166
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
85-351 3.45e-26

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240643 [Multi-domain]  Cd Length: 300  Bit Score: 108.06  E-value: 3.45e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  85 EDLEKFKTLRIIVRIGSGVDNIdVKAAGElGIAVCNvpGYGVEE--VADTTLCLILNLYRRTywlanmvregkkftgPEQ 162
Cdd:cd12166    53 EALRALPRLRVVQTLSAGYDGV-LPLLPE-GVTLCN--ARGVHDasTAELAVALILASLRGL---------------PRF 113
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 163 VREAATG-CARIRGDTLG-----IVGLGRIGSAVALRAKAFGFTVifydpylpdgieksLGLNR-------VYT---LQD 226
Cdd:cd12166   114 VRAQARGrWEPRRTPSLAdrrvlIVGYGSIGRAIERRLAPFEVRV--------------TRVARtarpgeqVHGideLPA 179
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 227 LLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRaAALDVHENEPYNVFQgqss 306
Cdd:cd12166   180 LLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDALVAELASGRLR-AALDVTDPEPLPPGH---- 254
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 2245593835 307 qcPLKDAPNLLCTPHAAFYSDASCTELREMAASEIRRAIVGRIPD 351
Cdd:cd12166   255 --PLWSAPGVLITPHVGGATPAFLPRAYALVRRQLRRYAAGEPLE 297
2-Hacid_dh_2 cd12159
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
115-323 2.34e-25

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240636  Cd Length: 303  Bit Score: 105.81  E-value: 2.34e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 115 GIAVCNVPGYGVEEVADTTLCLILNLYRRtywLANMVRegkkfTGPEQVREAATGCARIRGDTLGIVGLGRIGSAVALRA 194
Cdd:cd12159    73 GRRWTNAAGAYAETVAEHALALLLAGLRQ---LPARAR-----ATTWDPAEEDDLVTLLRGSTVAIVGAGGIGRALIPLL 144
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 195 KAFGFTVIFYD--PYLPDGIEKSLGLNRvytLQDLLFQSDCVSLHCTLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVD 272
Cdd:cd12159   145 APFGAKVIAVNrsGRPVEGADETVPADR---LDEVWPDADHVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVD 221
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2245593835 273 DDALAAALKQGRIRAAALDVHENEPynVFQGQssqcPLKDAPNLLCTPHAA 323
Cdd:cd12159   222 TDALVDALRSGEIAGAALDVTDPEP--LPDGH----PLWSLPNALITPHVA 266
GDH_like_2 cd12164
Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy ...
85-343 8.45e-25

Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family; This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240641 [Multi-domain]  Cd Length: 306  Bit Score: 104.12  E-value: 8.45e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  85 EDLEKFKTLRIIVRIGSGVDNIDvKAAGELGIAVCNV--PGYGvEEVADTTLCLILNLYRRTY----------WLANMVR 152
Cdd:cd12164    51 GLLARLPNLKAIFSLGAGVDHLL-ADPDLPDVPIVRLvdPGLA-QGMAEYVLAAVLRLHRDMDryaaqqrrgvWKPLPQR 128
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 153 EgkkftgPEQVReaatgcarirgdtLGIVGLGRIGSAVALRAKAFGFTVIFYD--PYLPDGIEKSLGLNRvytLQDLLFQ 230
Cdd:cd12164   129 P------AAERR-------------VGVLGLGELGAAVARRLAALGFPVSGWSrsPKDIEGVTCFHGEEG---LDAFLAQ 186
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 231 SDcvSLHCTL--NEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPynvfQGQSSqc 308
Cdd:cd12164   187 TD--ILVCLLplTPETRGILNAELLARLPRGAALINVGRGPHLVEADLLAALDSGHLSGAVLDVFEQEP----LPADH-- 258
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2245593835 309 PLKDAPNLLCTPHAAfySDASCTELREMAASEIRR 343
Cdd:cd12164   259 PLWRHPRVTVTPHIA--AITDPDSAAAQVAENIRR 291
PRK00257 PRK00257
4-phosphoerythronate dehydrogenase PdxB;
102-326 7.11e-24

4-phosphoerythronate dehydrogenase PdxB;


Pssm-ID: 166874 [Multi-domain]  Cd Length: 381  Bit Score: 102.81  E-value: 7.11e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 102 GVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILNLYRRtywlanmvrEGkkftgpeqvreaatgcARIRGDTLGIV 181
Cdd:PRK00257   68 GTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER---------EG----------------VDLAERTYGVV 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 182 GLGRIGSAVALRAKAFGFTVIFYDPylPDgiEKSLGLNRVYTLQDLLFQSDCVSLHCTLN-EHNH---HLINEFTIKQMR 257
Cdd:PRK00257  123 GAGHVGGRLVRVLRGLGWKVLVCDP--PR--QEAEGDGDFVSLERILEECDVISLHTPLTkEGEHptrHLLDEAFLASLR 198
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2245593835 258 PGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPyNVFQGQSSQCplkdapnLLCTPHAAFYS 326
Cdd:PRK00257  199 PGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEP-QIDLELADLC-------TIATPHIAGYS 259
2-Hacid_dh_3 cd12160
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
93-323 1.13e-21

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240637  Cd Length: 310  Bit Score: 95.14  E-value: 1.13e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  93 LRIIVRIGSGVDniDVKAAG-ELGIAVCNVPGYGVEEVADTTLCLILNLYRRTYWLANMVREGK---KFTGPEQVREAAt 168
Cdd:cd12160    60 LRWVQALAAGPD--AVLAAGfAPEVAVTSGRGLHDGTVAEHTLALILAAVRRLDEMREAQREHRwagELGGLQPLRPAG- 136
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 169 GCARIRGDTLGIVGLGRIGSAVALRAKAFGFTVIfydpylpdGIEKSLGLN---RVYT---LQDLLFQSDCVSLHCTLNE 242
Cdd:cd12160   137 RLTTLLGARVLIWGFGSIGQRLAPLLTALGARVT--------GVARSAGERagfPVVAedeLPELLPETDVLVMILPATP 208
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 243 HNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPYnvfqgqSSQCPLKDAPNLLCTPHA 322
Cdd:cd12160   209 STAHALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGRLGGAALDVTATEPL------PASSPLWDAPNLILTPHA 282

                  .
gi 2245593835 323 A 323
Cdd:cd12160   283 A 283
2-Hacid_dh_5 cd12163
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
174-321 7.02e-20

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240640  Cd Length: 334  Bit Score: 90.41  E-value: 7.02e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 174 RGDTLGIVGLGRIGSAVALRAKAFGFTVIFY-------------DPYL------PDGI--------EKSLGLNRVYTLQ- 225
Cdd:cd12163   132 VGKRVGILGYGSIGRQTARLAQALGMEVYAYtrsprptpesrkdDGYIvpgtgdPDGSipsawfsgTDKASLHEFLRQDl 211
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 226 DLLFqsdcVSLhcTLNEHNHHLIN--EFTIKQMRpGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPYnvfqg 303
Cdd:cd12163   212 DLLV----VSL--PLTPATKHLLGaeEFEILAKR-KTFVSNIARGSLVDTDALVAALESGQIRGAALDVTDPEPL----- 279
                         170
                  ....*....|....*...
gi 2245593835 304 qSSQCPLKDAPNLLCTPH 321
Cdd:cd12163   280 -PADHPLWSAPNVIITPH 296
PRK15438 PRK15438
erythronate-4-phosphate dehydrogenase PdxB; Provisional
74-297 2.64e-16

erythronate-4-phosphate dehydrogenase PdxB; Provisional


Pssm-ID: 185335 [Multi-domain]  Cd Length: 378  Bit Score: 80.34  E-value: 2.64e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  74 ALMWHTIILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEEVADTTLCLILnlyrrtywlanMVRE 153
Cdd:PRK15438   40 ALMVRSVTKVNESLLAGKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLL-----------MLAE 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 154 GKKFTgpeqvreaatgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPylPDGIEKSLGLNRvyTLQDLLFQSDC 233
Cdd:PRK15438  109 RDGFS--------------LHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDP--PRADRGDEGDFR--SLDELVQEADI 170
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2245593835 234 VSLHCTLNEHNH----HLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEP 297
Cdd:PRK15438  171 LTFHTPLFKDGPyktlHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEP 238
PRK06436 PRK06436
2-hydroxyacid dehydrogenase;
80-360 8.05e-15

2-hydroxyacid dehydrogenase;


Pssm-ID: 235800 [Multi-domain]  Cd Length: 303  Bit Score: 74.92  E-value: 8.05e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  80 IILTKEDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEeVADTTLCLILnLYRRTYWLANMVREGKKFtg 159
Cdd:PRK06436   37 AILIKGRYVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNAGAYSIS-VAEHAFALLL-AWAKNICENNYNMKNGNF-- 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 160 peqvREAATgcARIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPYLPDGiekslGLNRVY-TLQDLLFQSDCVSLHC 238
Cdd:PRK06436  113 ----KQSPT--KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-----GISSIYmEPEDIMKKSDFVLISL 181
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 239 TLNEHNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHENEPynvfqgQSSQCPLKdapNLLC 318
Cdd:PRK06436  182 PLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEP------IITETNPD---NVIL 252
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 2245593835 319 TPH-AAFYSDASCTELREMAASEIRRAIVGRiPdclRNCVNKE 360
Cdd:PRK06436  253 SPHvAGGMSGEIMQPAVALAFENIKNFFEGK-P---KNIVRKE 291
2-Hacid_dh_9 cd12170
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
58-323 9.72e-15

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240647 [Multi-domain]  Cd Length: 294  Bit Score: 74.65  E-value: 9.72e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  58 QSTSEIHEKVLNEAVGALMWHTIIlTKEDLEKFKTLRIIVRIGSGVD----NIDVKAAGELGIAVCNVPGYGVEEVADTT 133
Cdd:cd12170    35 ESDEEIIERIGDADCVLVSYTTQI-DEEVLEACPNIKYIGMCCSLYSeesaNVDIAAARENGITVTGIRDYGDEGVVEYV 113
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 134 LC-LI--LNLYRRTYWLaNMVREgkkftgpeqvreaatgcarIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYD-PYLP 209
Cdd:cd12170   114 ISeLIrlLHGFGGKQWK-EEPRE-------------------LTGLKVGIIGLGTTGQMIADALSFFGADVYYYSrTRKP 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 210 DGIEKSLglnRVYTLQDLLFQSDCVSLHctLNEhNHHLINEFTIKQMRPGAFLVNTARGGLVDDDALAAALKqgriraaa 289
Cdd:cd12170   174 DAEAKGI---RYLPLNELLKTVDVICTC--LPK-NVILLGEEEFELLGDGKILFNTSLGPSFEVEALKKWLK-------- 239
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 2245593835 290 ldvheNEPYNVFQGQS----SQCPLKDAPNLLCTPHAA 323
Cdd:cd12170   240 -----ASGYNIFDCDTagalGDEELLRYPNVICTNKSA 272
FDH_GDH_like cd12154
Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related ...
86-297 2.43e-13

Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases; The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases.


Pssm-ID: 240631 [Multi-domain]  Cd Length: 310  Bit Score: 70.72  E-value: 2.43e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  86 DLEKFKTLRIIVRIGSGVDNIDVK-AAGELGIAVCNVPGYgveevadTTLCLILNLYRRTYWLanmVREGKKFTgPEQVR 164
Cdd:cd12154    81 ALIQKLGDRLLFTYTIGADHRDLTeALARAGLTAIAVEGV-------ELPLLTSNSIGAGELS---VQFIARFL-EVQQP 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 165 EAATGCARIRGDTLGIVGLGRIGSAVALRAKAFGFTVIFYDPyLPDGIE--KSLGLNRVYTLQDLLFQSDCVSLHCTLNE 242
Cdd:cd12154   150 GRLGGAPDVAGKTVVVVGAGVVGKEAAQMLRGLGAQVLITDI-NVEALEqlEELGGKNVEELEEALAEADVIVTTTLLPG 228
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2245593835 243 HNHH-LINEFTIKQMRPGAFLVNTARGGLVDDDAL-AAALKQGRIRAAALDVHENEP 297
Cdd:cd12154   229 KRAGiLVPEELVEQMKPGSVIVNVAVGAVGCVQALhTQLLEEGHGVVHYGDVNMPGP 285
ghrA PRK15469
glyoxylate/hydroxypyruvate reductase GhrA;
74-323 2.72e-10

glyoxylate/hydroxypyruvate reductase GhrA;


Pssm-ID: 185366  Cd Length: 312  Bit Score: 61.35  E-value: 2.72e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835  74 ALMWHTIIltkeDLEKFKTLRIIVRIGSGVDNIDVKAAGELGIAVCNVPGYGVEevaDTTLCL---------ILNLYRRT 144
Cdd:PRK15469   42 ALVWHPPV----EMLAGRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLE---DTGMGEqmqeyavsqVLHWFRRF 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 145 YWLANMVREGKKFTGPEQVREAATgcarirgdtLGIVGLGRIGSAVALRAKAFGFTVIFYD---PYLPdGIEKSLG---- 217
Cdd:PRK15469  115 DDYQALQNSSHWQPLPEYHREDFT---------IGILGAGVLGSKVAQSLQTWGFPLRCWSrsrKSWP-GVQSFAGreel 184
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2245593835 218 ---LNRVYTLQDLLFQSDCvslhcTLNEHNHHLINeftikQMRPGAFLVNTARGGLVDDDALAAALKQGRIRAAALDVHE 294
Cdd:PRK15469  185 safLSQTRVLINLLPNTPE-----TVGIINQQLLE-----QLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFS 254
                         250       260
                  ....*....|....*....|....*....
gi 2245593835 295 NEPYnvfqgqSSQCPLKDAPNLLCTPHAA 323
Cdd:PRK15469  255 REPL------PPESPLWQHPRVAITPHVA 277
PRK09599 PRK09599
NADP-dependent phosphogluconate dehydrogenase;
178-228 8.52e-03

NADP-dependent phosphogluconate dehydrogenase;


Pssm-ID: 236582 [Multi-domain]  Cd Length: 301  Bit Score: 38.19  E-value: 8.52e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2245593835 178 LGIVGLGRIGSAVALRAKAFGFTVIFYDPYlPDGIE--KSLGLNRVYTLQDLL 228
Cdd:PRK09599    3 LGMIGLGRMGGNMARRLLRGGHEVVGYDRN-PEAVEalAEEGATGADSLEELV 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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