|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
205-411 |
1.40e-26 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 108.56 E-value: 1.40e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 205 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestl 284
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 285 grdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtdhPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIy 364
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2130968055 365 egqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRAHLQEF 411
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALL 179
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
220-416 |
2.53e-20 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 95.37 E-value: 2.53e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 220 AQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSI--RESTLGRDHPAVAATLNN 297
Cdd:NF040586 404 LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERqrRVLGLGEDHPHTLMTAGG 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 298 LAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIYEGQLGPDNPNVAR 377
Cdd:NF040586 484 LGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLL 563
|
170 180 190
....*....|....*....|....*....|....*....
gi 2130968055 378 TKNNLASCYLKQGKYAEAETLYKEILTRaHLQEFGSVDD 416
Cdd:NF040586 564 SANNLARDLRELGRYAEALDLLEEALER-YREVLGGPDH 601
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
192-489 |
4.71e-20 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 94.60 E-value: 4.71e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 192 SRGQGAQHsgyeiPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAH 271
Cdd:NF040586 467 VLGLGEDH-----PHTLMTAGGLGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALE 541
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 272 LLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVL-GTDHPDVAKQLNNLALLCQNQGKY 350
Cdd:NF040586 542 LDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRL 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 351 EAVERYYRRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRaHLQEFGsvdDDHkpiwmhaeeree 430
Cdd:NF040586 622 EEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDR-YRRVLG---EDH------------ 685
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2130968055 431 msksrhreggtPYTeyggwyKACKVssptvnttlrNLGALYRRQGKLEAAETLEECALR 489
Cdd:NF040586 686 -----------PFT------LACRN----------NLAVLLRALGDPEEARELAEAALE 717
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
193-405 |
6.91e-19 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 91.13 E-value: 6.91e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 193 RGQGAQHSGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPD-VATMLNiLALVYRDQNKYKEAAH 271
Cdd:NF040586 590 ERYREVLGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARE 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 272 LLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHP---DVAKQL-NNLALLCQNQ 347
Cdd:NF040586 669 LAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPytlAAAVNLaNDLAALGDLD 748
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2130968055 348 GKYEAVERYYRRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTR 405
Cdd:NF040586 749 AALGEEALERLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLAR 806
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
191-418 |
1.42e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 89.98 E-value: 1.42e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 191 LSRGQGAQHsgyeiPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERT-SGRGHPDVATMLNILALVYRDQNKYKEA 269
Cdd:NF040586 550 RRRVLGPDH-----PRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlGGPDHPDTLRAAKSLAVALRRAGRLEEA 624
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 270 AHLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGK 349
Cdd:NF040586 625 LELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGD 704
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2130968055 350 YEAVERYYRRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRAHLQEFGSVDDDH 418
Cdd:NF040586 705 PEEARELAEAALEGLRERLGPDHPYTLAAAVNLANDLAALGDLDAALGEEALERLRRLLGEDLRAGPDH 773
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
291-365 |
4.13e-17 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 76.27 E-value: 4.13e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2130968055 291 VAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIYE 365
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
193-375 |
6.63e-17 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 84.59 E-value: 6.63e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 193 RGQGAQHsgyeiPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHL 272
Cdd:NF040586 637 RRFGPDH-----PDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 273 LNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLC----QRALEIREKVLGTDHPDVAKQLNNLALLCQNQG 348
Cdd:NF040586 712 AEAALEGLRERLGPDHPYTLAAAVNLANDLAALGDLDAALGEEalerLRRLLGEDLRAGPDHPDTLACAANLALDLRATG 791
|
170 180
....*....|....*....|....*..
gi 2130968055 349 KYEAVERYYRRALAIYEGQLGPDNPNV 375
Cdd:NF040586 792 RTEEAEELRADTLARLRRVLGPDHPDT 818
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
206-409 |
3.82e-09 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 57.35 E-value: 3.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 206 ARLRTlhNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlg 285
Cdd:TIGR02521 31 AKIRV--QLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 286 rdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEirekvlGTDHPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIye 365
Cdd:TIGR02521 95 --NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-- 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2130968055 366 gqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRAHLQ 409
Cdd:TIGR02521 165 ------DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT 202
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
301-405 |
1.35e-05 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 48.38 E-value: 1.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 301 LYgKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVER------------------------- 355
Cdd:NF040586 402 LY-LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEAREldedtlerqrrvlglgedhphtlmt 480
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2130968055 356 ------------YYRRALAI----YEGQ---LGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTR 405
Cdd:NF040586 481 agglgadlralgRFREALELdeetLERHrrvFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRR 549
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
375-493 |
5.66e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.60 E-value: 5.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 375 VARTKNNLASCYLKQGKYAEAETLYKEILTRAHlqefgsvdddhkpiwmhaeereemsksrhREGGTPYTEYGgwykack 454
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIAR-----------------------------RLLGPDHPLTA------- 45
|
90 100 110
....*....|....*....|....*....|....*....
gi 2130968055 455 vssptvnTTLRNLGALYRRQGKLEAAETLEECALRSQKQ 493
Cdd:pfam13424 46 -------TTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
292-324 |
1.70e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.97 E-value: 1.70e-04
10 20 30
....*....|....*....|....*....|...
gi 2130968055 292 AATLNNLAVLYGKRGKYKEAEPLCQRALEIREK 324
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
182-293 |
3.81e-04 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 43.75 E-value: 3.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 182 EEEEDPSNGLSRGQGAQHsgyeiPARLRTLHNLVIQYAAQGRYEVAvpLCKQALEDLERTSGRG------HPDVATMLNI 255
Cdd:NF040586 710 ELAEAALEGLRERLGPDH-----PYTLAAAVNLANDLAALGDLDAA--LGEEALERLRRLLGEDlragpdHPDTLACAAN 782
|
90 100 110
....*....|....*....|....*....|....*...
gi 2130968055 256 LALVYRDQNKYKEAAHLLNDALSIRESTLGRDHPAVAA 293
Cdd:NF040586 783 LALDLRATGRTEEAEELRADTLARLRRVLGPDHPDTVA 820
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
206-389 |
1.19e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 41.99 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 206 ARLRTLHNLviqyaAQGRYEVAVPLCKQALedlertsgRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLG 285
Cdd:PRK11447 272 ARAQGLAAV-----DSGQGGKAIPELQQAV--------RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 286 RDHPAVAATLNN--LAVLYG----KRGKYKEAEPLCQRALEIREK----VLGTDhpDVAkqlnnLAllcqnQGKYEAVER 355
Cdd:PRK11447 339 RDKWESLLKVNRywLLIQQGdaalKANNLAQAERLYQQARQVDNTdsyaVLGLG--DVA-----MA-----RKDYAAAER 406
|
170 180 190
....*....|....*....|....*....|....
gi 2130968055 356 YYRRALaiyegQLGPDNPNVARtknNLASCYLKQ 389
Cdd:PRK11447 407 YYQQAL-----RMDPGNTNAVR---GLANLYRQQ 432
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
261-406 |
1.44e-03 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 41.18 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 261 RDQNKYKEAAHLLNDA--LSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPdvAKQ-- 336
Cdd:cd24145 114 SELGKWELRERLLKKAveILLKLGELWMSPSEVGAFLEELATAYDLYGRFCLALPLYMQALSLKGQILLSQAN--CHSlv 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 337 -LNNLAL-LCQNQGK---------------------YEAVERYYRRALAIYEgqlgpDNPNVARTKN----------NLA 383
Cdd:cd24145 192 lMNNEAAeLALHALRkplsstlieasrlpqksrdqlLEAALKWAQKALDVAK-----SIKPKDRDPEcdqacalalyNLG 266
|
170 180
....*....|....*....|...
gi 2130968055 384 SCYLKQGKYAEAETLYKEILTRA 406
Cdd:cd24145 267 VIAEMLGNLDEARKLYKEAISLA 289
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
33-148 |
2.48e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 33 LEALHSEHQAVLQSLSHTIECLQQGGHEEGLVHEKARQLRRSMENIELGLSEAQ-VMLALASHLSTVESEKQKLRAQVRR 111
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkELYALANEISRLEQQKQILRERLAN 313
|
90 100 110
....*....|....*....|....*....|....*..
gi 2130968055 112 LCQENQWLRDELAGTQQRLQRSEQAVAQLEEEKKHLE 148
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
205-411 |
1.40e-26 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 108.56 E-value: 1.40e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 205 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestl 284
Cdd:COG0457 5 PDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL--------DPDDAEALYNLGLAYLRLGRYEEALADYEQALEL----- 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 285 grdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtdhPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIy 364
Cdd:COG0457 72 ---DPDDAEALNNLGLALQALGRYEEALEDYDKALELD--------PDDAEALYNLGLALLELGRYDEAIEAYERALEL- 139
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2130968055 365 egqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRAHLQEF 411
Cdd:COG0457 140 -------DPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALL 179
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
220-416 |
2.53e-20 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 95.37 E-value: 2.53e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 220 AQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSI--RESTLGRDHPAVAATLNN 297
Cdd:NF040586 404 LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEARELDEDTLERqrRVLGLGEDHPHTLMTAGG 483
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 298 LAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIYEGQLGPDNPNVAR 377
Cdd:NF040586 484 LGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRRRRRVLGPDHPRTLL 563
|
170 180 190
....*....|....*....|....*....|....*....
gi 2130968055 378 TKNNLASCYLKQGKYAEAETLYKEILTRaHLQEFGSVDD 416
Cdd:NF040586 564 SANNLARDLRELGRYAEALDLLEEALER-YREVLGGPDH 601
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
192-489 |
4.71e-20 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 94.60 E-value: 4.71e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 192 SRGQGAQHsgyeiPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAH 271
Cdd:NF040586 467 VLGLGEDH-----PHTLMTAGGLGADLRALGRFREALELDEETLERHRRVFGEDHPRTLRAANNLAVSLRLLGDYREALE 541
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 272 LLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVL-GTDHPDVAKQLNNLALLCQNQGKY 350
Cdd:NF040586 542 LDREVLRRRRRVLGPDHPRTLLSANNLARDLRELGRYAEALDLLEEALERYREVLgGPDHPDTLRAAKSLAVALRRAGRL 621
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 351 EAVERYYRRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRaHLQEFGsvdDDHkpiwmhaeeree 430
Cdd:NF040586 622 EEALELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDR-YRRVLG---EDH------------ 685
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*....
gi 2130968055 431 msksrhreggtPYTeyggwyKACKVssptvnttlrNLGALYRRQGKLEAAETLEECALR 489
Cdd:NF040586 686 -----------PFT------LACRN----------NLAVLLRALGDPEEARELAEAALE 717
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
191-406 |
5.96e-20 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 93.90 E-value: 5.96e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 191 LSRGQGAQHSGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRghPDVATMLNILALVYRDQNKYKEAA 270
Cdd:COG3914 21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAAL--LLLAALLELAALLLQALGRYEEAL 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 271 HLLNDALSIrestlgrdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtdHPDVAKQLNNLALLCQNQGKY 350
Cdd:COG3914 99 ALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALAL--------NPDFAEAYLNLGEALRRLGRL 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 2130968055 351 EAVERYYRRALAIyegqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 406
Cdd:COG3914 163 EEAIAALRRALEL--------DPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD 210
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
193-405 |
6.91e-19 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 91.13 E-value: 6.91e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 193 RGQGAQHSGYEIPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPD-VATMLNiLALVYRDQNKYKEAAH 271
Cdd:NF040586 590 ERYREVLGGPDHPDTLRAAKSLAVALRRAGRLEEALELAEDTYERYRRRFGPDHPDtLAAALS-LANDLRALGDADEARE 668
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 272 LLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHP---DVAKQL-NNLALLCQNQ 347
Cdd:NF040586 669 LAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEARELAEAALEGLRERLGPDHPytlAAAVNLaNDLAALGDLD 748
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 2130968055 348 GKYEAVERYYRRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTR 405
Cdd:NF040586 749 AALGEEALERLRRLLGEDLRAGPDHPDTLACAANLALDLRATGRTEEAEELRADTLAR 806
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
191-418 |
1.42e-18 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 89.98 E-value: 1.42e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 191 LSRGQGAQHsgyeiPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERT-SGRGHPDVATMLNILALVYRDQNKYKEA 269
Cdd:NF040586 550 RRRVLGPDH-----PRTLLSANNLARDLRELGRYAEALDLLEEALERYREVlGGPDHPDTLRAAKSLAVALRRAGRLEEA 624
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 270 AHLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGK 349
Cdd:NF040586 625 LELAEDTYERYRRRFGPDHPDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGD 704
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2130968055 350 YEAVERYYRRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRAHLQEFGSVDDDH 418
Cdd:NF040586 705 PEEARELAEAALEGLRERLGPDHPYTLAAAVNLANDLAALGDLDAALGEEALERLRRLLGEDLRAGPDH 773
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
205-409 |
9.22e-18 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 83.13 E-value: 9.22e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 205 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestl 284
Cdd:COG0457 39 PDDAEALYNLGLAYLRLGRYEEALADYEQALEL--------DPDDAEALNNLGLALQALGRYEEALEDYDKALELD---- 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 285 grdhPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtdhPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIY 364
Cdd:COG0457 107 ----PDDAEALYNLGLALLELGRYDEAIEAYERALELD--------PDDADALYNLGIALEKLGRYEEALELLEKLEAAA 174
|
170 180 190 200
....*....|....*....|....*....|....*....|....*
gi 2130968055 365 EGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRAHLQ 409
Cdd:COG0457 175 LAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAAL 219
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
291-365 |
4.13e-17 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 76.27 E-value: 4.13e-17
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2130968055 291 VAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIYE 365
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAE 76
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
193-375 |
6.63e-17 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 84.59 E-value: 6.63e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 193 RGQGAQHsgyeiPARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHL 272
Cdd:NF040586 637 RRFGPDH-----PDTLAAALSLANDLRALGDADEARELAREVLDRYRRVLGEDHPFTLACRNNLAVLLRALGDPEEAREL 711
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 273 LNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLC----QRALEIREKVLGTDHPDVAKQLNNLALLCQNQG 348
Cdd:NF040586 712 AEAALEGLRERLGPDHPYTLAAAVNLANDLAALGDLDAALGEEalerLRRLLGEDLRAGPDHPDTLACAANLALDLRATG 791
|
170 180
....*....|....*....|....*..
gi 2130968055 349 KYEAVERYYRRALAIYEGQLGPDNPNV 375
Cdd:NF040586 792 RTEEAEELRADTLARLRRVLGPDHPDT 818
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
218-491 |
3.01e-16 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 79.39 E-value: 3.01e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 218 YAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgrdhPAVAATLNN 297
Cdd:COG2956 52 YRRRGEYDRAIRIHQKLLER--------DPDRAEALLELAQDYLKAGLLDRAEELLEKLLELD--------PDDAEALRL 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 298 LAVLYGKRGKYKEAEPLCQRALEIrekvlgtdHPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIyegqlgpdNPNVAR 377
Cdd:COG2956 116 LAEIYEQEGDWEKAIEVLERLLKL--------GPENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCAR 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 378 TKNNLASCYLKQGKYAEAETLYKEILTRahlqefgsvDDDHKPIwmhaeeREEMSKSRHREGGtpYTEYGGWYKACKVSS 457
Cdd:COG2956 180 ALLLLAELYLEQGDYEEAIAALERALEQ---------DPDYLPA------LPRLAELYEKLGD--PEEALELLRKALELD 242
|
250 260 270
....*....|....*....|....*....|....
gi 2130968055 458 PTvNTTLRNLGALYRRQGKLEAAETLEECALRSQ 491
Cdd:COG2956 243 PS-DDLLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
248-324 |
2.84e-15 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 70.88 E-value: 2.84e-15
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2130968055 248 DVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREK 324
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| Spy |
COG3914 |
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ... |
217-406 |
6.53e-14 |
|
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443119 [Multi-domain] Cd Length: 658 Bit Score: 75.03 E-value: 6.53e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 217 QYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRE-STLGRDHPAVAATL 295
Cdd:COG3914 2 AAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEaAAAAAALLLLAALL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 296 NNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtdHPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIyegqlgpdNPNV 375
Cdd:COG3914 82 ELAALLLQALGRYEEALALYRRALAL--------NPDNAEALFNLGNLLLALGRLEEALAALRRALAL--------NPDF 145
|
170 180 190
....*....|....*....|....*....|.
gi 2130968055 376 ARTKNNLASCYLKQGKYAEAETLYKEILTRA 406
Cdd:COG3914 146 AEAYLNLGEALRRLGRLEEAIAALRRALELD 176
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
217-493 |
7.64e-14 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 72.07 E-value: 7.64e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 217 QYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlgrdHPAVAATLN 296
Cdd:COG2956 17 NYLLNGQPDKAIDLLEEALEL--------DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER--------DPDRAEALL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 297 NLAVLYGKRGKYKEAEPLCQRALEIRekvlgtdhPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIyegqlgpdNPNVA 376
Cdd:COG2956 81 ELAQDYLKAGLLDRAEELLEKLLELD--------PDDAEALRLLAEIYEQEGDWEKAIEVLERLLKL--------GPENA 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 377 RTKNNLASCYLKQGKYAEAETLYKEILtrahlqefgSVDDDHKPIWMHAEEREEMSKSrhreggtpYTEYGGWYKACKVS 456
Cdd:COG2956 145 HAYCELAELYLEQGDYDEAIEALEKAL---------KLDPDCARALLLLAELYLEQGD--------YEEAIAALERALEQ 207
|
250 260 270
....*....|....*....|....*....|....*..
gi 2130968055 457 SPTVNTTLRNLGALYRRQGKLEAAETLEECALRSQKQ 493
Cdd:COG2956 208 DPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS 244
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
332-406 |
1.92e-13 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 65.87 E-value: 1.92e-13
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2130968055 332 DVAKQLNNLALLCQNQGKYEAVERYYRRALAIYEGQLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 406
Cdd:pfam13424 1 DVATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALA 75
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
291-332 |
5.07e-13 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 63.29 E-value: 5.07e-13
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2130968055 291 VAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPD 332
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
256-406 |
5.66e-13 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 66.37 E-value: 5.66e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 256 LALVYRDQNKYKEAAHLLNDALsirestlgRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtdHPDVAK 335
Cdd:COG4783 10 LAQALLLAGDYDEAEALLEKAL--------ELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL--------DPDEPE 73
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2130968055 336 QLNNLALLCQNQGKYEAVERYYRRALAIYegqlgPDNPNVARtknNLASCYLKQGKYAEAETLYKEILTRA 406
Cdd:COG4783 74 ARLNLGLALLKAGDYDEALALLEKALKLD-----PEHPEAYL---RLARAYRALGRPDEAIAALEKALELD 136
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
206-364 |
2.11e-12 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 64.83 E-value: 2.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 206 ARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlg 285
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALEL------ 67
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2130968055 286 rdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEirekvLGTDHPDVakqLNNLALLCQNQGKYEAVERYYRRALAIY 364
Cdd:COG4783 68 --DPDEPEARLNLGLALLKAGDYDEALALLEKALK-----LDPEHPEA---YLRLARAYRALGRPDEAIAALEKALELD 136
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
207-282 |
3.91e-12 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 62.02 E-value: 3.91e-12
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2130968055 207 RLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRES 282
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIARRLLGPDHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
255-406 |
9.50e-12 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 65.91 E-value: 9.50e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 255 ILALVYRDQNKYKEAAHLLNDALSIrestlgrdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtdHPDVA 334
Cdd:COG2956 13 FKGLNYLLNGQPDKAIDLLEEALEL--------DPETVEAHLALGNLYRRRGEYDRAIRIHQKLLER--------DPDRA 76
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2130968055 335 KQLNNLALLCQNQGKYEAVERYYRRALaiyegQLGPDNPNVARtknNLASCYLKQGKYAEAETLYKEILTRA 406
Cdd:COG2956 77 EALLELAQDYLKAGLLDRAEELLEKLL-----ELDPDDAEALR---LLAEIYEQEGDWEKAIEVLERLLKLG 140
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
301-403 |
1.31e-11 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 60.95 E-value: 1.31e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 301 LYGKRGKYKEAEPLCQRALEIrekvlgtdHPDVAKQLNNLALLCQNQGKYEAVERYyRRALAIyegqlgpdNPNVARTKN 380
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63
|
90 100
....*....|....*....|...
gi 2130968055 381 NLASCYLKQGKYAEAETLYKEIL 403
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERAL 86
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
250-409 |
1.37e-11 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 63.06 E-value: 1.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 250 ATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtd 329
Cdd:COG5010 12 LYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL-------- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 330 HPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIyegqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRAHLQ 409
Cdd:COG5010 84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSPLK 155
|
|
| TPR |
COG0457 |
Tetratricopeptide (TPR) repeat [General function prediction only]; |
205-368 |
7.32e-11 |
|
Tetratricopeptide (TPR) repeat [General function prediction only];
Pssm-ID: 440225 [Multi-domain] Cd Length: 245 Bit Score: 62.72 E-value: 7.32e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 205 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEdlertsgrGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestl 284
Cdd:COG0457 73 PDDAEALNNLGLALQALGRYEEALEDYDKALE--------LDPDDAEALYNLGLALLELGRYDEAIEAYERALELD---- 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 285 grdhPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIY 364
Cdd:COG0457 141 ----PDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTL 216
|
....
gi 2130968055 365 EGQL 368
Cdd:COG0457 217 AALA 220
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
259-363 |
1.80e-10 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 57.87 E-value: 1.80e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 259 VYRDQNKYKEAAHLLNDALSIrestlgrdHPAVAATLNNLAVLYGKRGKYKEAEPLcQRALEIrekvlgtdHPDVAKQLN 338
Cdd:COG3063 1 LYLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALL 63
|
90 100
....*....|....*....|....*
gi 2130968055 339 NLALLCQNQGKYEAVERYYRRALAI 363
Cdd:COG3063 64 NLAELLLELGDYDEALAYLERALEL 88
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
290-406 |
3.95e-10 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 58.28 E-value: 3.95e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 290 AVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtdHPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIYegqlg 369
Cdd:COG4783 2 ACAEALYALAQALLLAGDYDEAEALLEKALEL--------DPDNPEAFALLGEILLQLGDLDEAIVLLHEALELD----- 68
|
90 100 110
....*....|....*....|....*....|....*..
gi 2130968055 370 PDNPNVArtkNNLASCYLKQGKYAEAETLYKEILTRA 406
Cdd:COG4783 69 PDEPEAR---LNLGLALLKAGDYDEALALLEKALKLD 102
|
|
| TadD |
COG5010 |
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ... |
205-363 |
1.07e-09 |
|
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];
Pssm-ID: 444034 [Multi-domain] Cd Length: 155 Bit Score: 57.66 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 205 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestl 284
Cdd:COG5010 9 RLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL----- 83
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2130968055 285 grdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtdHPDVAKQLNNLALLCQNQGKYEAVERYYRRALAI 363
Cdd:COG5010 84 ---DPNNPELYYNLALLYSRSGDKDEAKEYYEKALAL--------SPDNPNAYSNLAALLLSLGQDDEAKAALQRALGT 151
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
213-400 |
1.99e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 58.00 E-value: 1.99e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 213 NLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgrdhPAVA 292
Cdd:COG4785 36 ALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD--------PDLA 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 293 ATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtdhPDVAKQLNNLALLCQNQGKYEAVERYYRRALA---------- 362
Cdd:COG4785 108 EAYNNRGLAYLLLGDYDAALEDFDRALELD--------PDYAYAYLNRGIALYYLGRYELAIADLEKALEldpndperal 179
|
170 180 190 200
....*....|....*....|....*....|....*....|.
gi 2130968055 363 ---IYEGQLGPDnPNVARTKNNLASCYLKQGKYAEAETLYK 400
Cdd:COG4785 180 wlyLAERKLDPE-KALALLLEDWATAYLLQGDTEEARELFK 219
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
256-429 |
2.66e-09 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 57.62 E-value: 2.66e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 256 LALVYRDQNKYKEAAHLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtdhPDVAK 335
Cdd:COG4785 37 LAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELD--------PDLAE 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 336 QLNNLALLCQNQGKYEAVERYYRRALAIyegqlgpdNPNVARTKNNLASCYLKQGKYAEAEtlykeiltrAHLQEFGSVD 415
Cdd:COG4785 109 AYNNRGLAYLLLGDYDAALEDFDRALEL--------DPDYAYAYLNRGIALYYLGRYELAI---------ADLEKALELD 171
|
170
....*....|....*.
gi 2130968055 416 --DDHKPIWMHAEERE 429
Cdd:COG4785 172 pnDPERALWLYLAERK 187
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
286-406 |
2.88e-09 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 55.40 E-value: 2.88e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 286 RDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIRekvlgtdhPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIye 365
Cdd:COG4235 11 AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALAL-- 80
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 2130968055 366 gqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 406
Cdd:COG4235 81 ------DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALL 115
|
|
| type_IV_pilW |
TIGR02521 |
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ... |
206-409 |
3.82e-09 |
|
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Pssm-ID: 131573 [Multi-domain] Cd Length: 234 Bit Score: 57.35 E-value: 3.82e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 206 ARLRTlhNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlg 285
Cdd:TIGR02521 31 AKIRV--QLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 286 rdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEirekvlGTDHPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIye 365
Cdd:TIGR02521 95 --NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE------DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI-- 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 2130968055 366 gqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRAHLQ 409
Cdd:TIGR02521 165 ------DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQT 202
|
|
| LapB |
COG2956 |
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ... |
205-364 |
5.26e-09 |
|
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 442196 [Multi-domain] Cd Length: 275 Bit Score: 57.43 E-value: 5.26e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 205 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestl 284
Cdd:COG2956 141 PENAHAYCELAELYLEQGDYDEAIEALEKALKL--------DPDCARALLLLAELYLEQGDYEEAIAALERALEQ----- 207
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 285 grdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIrekvlgtdHPDVAkQLNNLALLCQNQGKYEAVERYYRRALAIY 364
Cdd:COG2956 208 ---DPDYLPALPRLAELYEKLGDPEEALELLRKALEL--------DPSDD-LLLALADLLERKEGLEAALALLERQLRRH 275
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
218-326 |
6.27e-09 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 53.64 E-value: 6.27e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 218 YAAQGRYEVAVPLCKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLlNDALSIrestlgrdHPAVAATLNN 297
Cdd:COG3063 2 YLKLGDLEEAEEYYEKALEL--------DPDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALLN 64
|
90 100
....*....|....*....|....*....
gi 2130968055 298 LAVLYGKRGKYKEAEPLCQRALEIREKVL 326
Cdd:COG3063 65 LAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
249-289 |
1.43e-08 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 50.96 E-value: 1.43e-08
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 2130968055 249 VATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLGRDHP 289
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHP 41
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
244-404 |
1.79e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 57.79 E-value: 1.79e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 244 RGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlgrdHPAVAATLNNLAVLYGKRgKYKEAEPLCQRALEIRe 323
Cdd:TIGR02917 764 KTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKK--------APDNAVVLNNLAWLYLEL-KDPRALEYAERALKLA- 833
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 324 kvlgtdhPDVAKQLNNLALLCQNQGKYEAVERYYRRALAIyegqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEIL 403
Cdd:TIGR02917 834 -------PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--------APEAAAIRYHLALALLATGRKAEARKELDKLL 898
|
.
gi 2130968055 404 T 404
Cdd:TIGR02917 899 N 899
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
304-405 |
2.65e-08 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 52.30 E-value: 2.65e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 304 KRGKYKEAEPLCQRALEirekvlgtDHPD---VAKQLNNLALLCQNQGKYEAVERYYRRALAIYegqlgPDNPNVARTKN 380
Cdd:COG1729 5 KAGDYDEAIAAFKAFLK--------RYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRY-----PDSPKAPDALL 71
|
90 100
....*....|....*....|....*
gi 2130968055 381 NLASCYLKQGKYAEAETLYKEILTR 405
Cdd:COG1729 72 KLGLSYLELGDYDKARATLEELIKK 96
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
218-406 |
2.84e-08 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 57.02 E-value: 2.84e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 218 YAAQGRYEVAVPLCKQALEdLERTSGrghpdvATMLniLALVYRDQNKYKEAAHLLNDALsirestlgRDHPAVAATLNN 297
Cdd:TIGR02917 713 YLRQKDYPAAIQAYRKALK-RAPSSQ------NAIK--LHRALLASGNTAEAVKTLEAWL--------KTHPNDAVLRTA 775
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 298 LAVLYGKRGKYKEAEPLCQRALEIrekvlgtdHPDVAKQLNNLALLCQNQGKYEAVErYYRRALaiyegQLGPDNPNVAR 377
Cdd:TIGR02917 776 LAELYLAQKDYDKAIKHYQTVVKK--------APDNAVVLNNLAWLYLELKDPRALE-YAERAL-----KLAPNIPAILD 841
|
170 180
....*....|....*....|....*....
gi 2130968055 378 TknnLASCYLKQGKYAEAETLYKEILTRA 406
Cdd:TIGR02917 842 T---LGWLLVEKGEADRALPLLRKAVNIA 867
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
205-321 |
6.51e-06 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 45.77 E-value: 6.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 205 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDLertsgrghPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestl 284
Cdd:COG4235 14 PNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLD--------PDNADALLDLAEALLAAGDTEEAEELLERALAL----- 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 2130968055 285 grdHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEI 321
Cdd:COG4235 81 ---DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLAL 114
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
232-406 |
7.86e-06 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 48.93 E-value: 7.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 232 KQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgrdhPAVAATLNNLAVLYGKRGKYKEA 311
Cdd:TIGR02917 107 QQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAID--------PRSLYAKLGLAQLALAENRFDEA 178
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 312 EPLCQRALEIrekvlgtdHPDVAKQLNNLALLCQNQGKYEAVERYYRRALaiyegQLGPDNPNVartKNNLASCYLKQGK 391
Cdd:TIGR02917 179 RALIDEVLTA--------DPGNVDALLLKGDLLLSLGNIELALAAYRKAI-----ALRPNNIAV---LLALATILIEAGE 242
|
170
....*....|....*
gi 2130968055 392 YAEAETLYKEILTRA 406
Cdd:TIGR02917 243 FEEAEKHADALLKKA 257
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
163-362 |
7.90e-06 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 47.22 E-value: 7.90e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 163 AEEKEGDATKDSLDDLFPNEEEEDPSNGLSRGQGAQHSGYEI---PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEDle 239
Cdd:COG4785 25 LLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRAlalPDLAQLYYERGVAYDSLGDYDLAIADFDQALEL-- 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 240 rtsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRestlgrdhPAVAATLNNLAVLYGKRGKYKEAEPLCQRAL 319
Cdd:COG4785 103 ------DPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELD--------PDYAYAYLNRGIALYYLGRYELAIADLEKAL 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2130968055 320 EIREK----------VLGTDHPDVAKQL--NNLALLCQNQGKYEAVERYYRRALA 362
Cdd:COG4785 169 ELDPNdperalwlylAERKLDPEKALALllEDWATAYLLQGDTEEARELFKLALA 223
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
208-248 |
9.22e-06 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 42.87 E-value: 9.22e-06
10 20 30 40
....*....|....*....|....*....|....*....|.
gi 2130968055 208 LRTLHNLVIQYAAQGRYEVAVPLCKQALEDLERTSGRGHPD 248
Cdd:pfam13374 2 ASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| BepA |
COG4783 |
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ... |
205-321 |
1.25e-05 |
|
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443813 [Multi-domain] Cd Length: 139 Bit Score: 45.18 E-value: 1.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 205 PARLRTLHNLVIQYAAQGRYEVAVPLCKQALEdlertsgrGHPDVATMLNILALVYRDQNKYKEAAHLLNDALsirestl 284
Cdd:COG4783 35 PDNPEAFALLGEILLQLGDLDEAIVLLHEALE--------LDPDEPEARLNLGLALLKAGDYDEALALLEKAL------- 99
|
90 100 110
....*....|....*....|....*....|....*..
gi 2130968055 285 gRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEI 321
Cdd:COG4783 100 -KLDPEHPEAYLRLARAYRALGRPDEAIAALEKALEL 135
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
301-405 |
1.35e-05 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 48.38 E-value: 1.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 301 LYgKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQGKYEAVER------------------------- 355
Cdd:NF040586 402 LY-LRGDYESARDLAERALERWRERLGPDDRQTLRLRFHLANALRSLGRYEEAREldedtlerqrrvlglgedhphtlmt 480
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2130968055 356 ------------YYRRALAI----YEGQ---LGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTR 405
Cdd:NF040586 481 agglgadlralgRFREALELdeetLERHrrvFGEDHPRTLRAANNLAVSLRLLGDYREALELDREVLRR 549
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
333-374 |
1.35e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 42.49 E-value: 1.35e-05
10 20 30 40
....*....|....*....|....*....|....*....|..
gi 2130968055 333 VAKQLNNLALLCQNQGKYEAVERYYRRALAIYEGQLGPDNPN 374
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRERVLGPDHPD 42
|
|
| TPR_MalT |
pfam17874 |
MalT-like TPR region; This entry contains a series of TPR repeats. |
217-416 |
2.99e-05 |
|
MalT-like TPR region; This entry contains a series of TPR repeats.
Pssm-ID: 436107 [Multi-domain] Cd Length: 336 Bit Score: 46.54 E-value: 2.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 217 QYAAQGRYEVAVPLCKQALEDLERTSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALsiresTLGRDHPAVAATLN 296
Cdd:pfam17874 89 ILRAQGRLHQALETYQQALQLARDHGLQHLPLHGFLLVGLADLLYEWNDLEEAEQHAQQGI-----QLGRQWEPDAAVDA 163
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 297 NLAVLYGK--RGKYKEAEPLCQRALEI-REKVLGTDHPDVAKQLNNLALLCQNQgkyeavERYYRRALAIYEGQLGPDNP 373
Cdd:pfam17874 164 YVLLARIAlaQGELEEALTLLRRAELLaRQSFFHVDWLANAERVRVRLWLARGD------LRAAVRWLRAAEPPSDADNH 237
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 2130968055 374 NVARTKNNLASCYLKQGKYAEAETLYKEILTRAhlQEFGSVDD 416
Cdd:pfam17874 238 FLERELRNLARVLLALGRFDDALSLLERLQNLA--EQLGRVRS 278
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
292-324 |
3.08e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 41.25 E-value: 3.08e-05
10 20 30
....*....|....*....|....*....|...
gi 2130968055 292 AATLNNLAVLYGKRGKYKEAEPLCQRALEIREK 324
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPN 33
|
|
| NrfG |
COG4235 |
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ... |
330-407 |
3.28e-05 |
|
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443378 [Multi-domain] Cd Length: 131 Bit Score: 43.84 E-value: 3.28e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2130968055 330 HPDVAKQLNNLALLCQNQGKYEAVERYYRRALaiyegQLGPDNPNVartKNNLASCYLKQGKYAEAETLYKEILTRAH 407
Cdd:COG4235 13 NPNDAEGWLLLGRAYLRLGRYDEALAAYEKAL-----RLDPDNADA---LLDLAEALLAAGDTEEAEELLERALALDP 82
|
|
| TPR_12 |
pfam13424 |
Tetratricopeptide repeat; |
375-493 |
5.66e-05 |
|
Tetratricopeptide repeat;
Pssm-ID: 315987 [Multi-domain] Cd Length: 77 Bit Score: 41.60 E-value: 5.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 375 VARTKNNLASCYLKQGKYAEAETLYKEILTRAHlqefgsvdddhkpiwmhaeereemsksrhREGGTPYTEYGgwykack 454
Cdd:pfam13424 2 VATALNNLAAVLRRLGRYDEALELLEKALEIAR-----------------------------RLLGPDHPLTA------- 45
|
90 100 110
....*....|....*....|....*....|....*....
gi 2130968055 455 vssptvnTTLRNLGALYRRQGKLEAAETLEECALRSQKQ 493
Cdd:pfam13424 46 -------TTLLNLGRLYLELGRYEEALELLERALALAEK 77
|
|
| CpoB |
COG1729 |
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ... |
260-384 |
9.00e-05 |
|
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 441335 [Multi-domain] Cd Length: 113 Bit Score: 42.29 E-value: 9.00e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 260 YRDQNKYKEAAHLLNDALSirestLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEirekvLGTDHPDVAKQLNN 339
Cdd:COG1729 3 LLKAGDYDEAIAAFKAFLK-----RYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLK-----RYPDSPKAPDALLK 72
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2130968055 340 LALLCQNQGKYEAVERYYRRALAIYegqlgPDNPNVARTKNNLAS 384
Cdd:COG1729 73 LGLSYLELGDYDKARATLEELIKKY-----PDSEAAKEARARLAR 112
|
|
| NlpI |
COG4785 |
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis]; |
268-403 |
1.41e-04 |
|
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 443815 [Multi-domain] Cd Length: 223 Bit Score: 43.75 E-value: 1.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 268 EAAHLLNDALSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPDVAKQLNNLALLCQNQ 347
Cdd:COG4785 7 ALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALALPDLAQLYYERGVAYDSL 86
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 2130968055 348 GKYEAVERYYRRALAIyegqlgpdNPNVARTKNNLASCYLKQGKYAEAETLYKEIL 403
Cdd:COG4785 87 GDYDLAIADFDQALEL--------DPDLAEAYNNRGLAYLLLGDYDAALEDFDRAL 134
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
292-324 |
1.70e-04 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 38.97 E-value: 1.70e-04
10 20 30
....*....|....*....|....*....|...
gi 2130968055 292 AATLNNLAVLYGKRGKYKEAEPLCQRALEIREK 324
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPN 33
|
|
| FxSxx_TPR |
NF040586 |
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ... |
182-293 |
3.81e-04 |
|
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.
Pssm-ID: 468560 [Multi-domain] Cd Length: 836 Bit Score: 43.75 E-value: 3.81e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 182 EEEEDPSNGLSRGQGAQHsgyeiPARLRTLHNLVIQYAAQGRYEVAvpLCKQALEDLERTSGRG------HPDVATMLNI 255
Cdd:NF040586 710 ELAEAALEGLRERLGPDH-----PYTLAAAVNLANDLAALGDLDAA--LGEEALERLRRLLGEDlragpdHPDTLACAAN 782
|
90 100 110
....*....|....*....|....*....|....*...
gi 2130968055 256 LALVYRDQNKYKEAAHLLNDALSIRESTLGRDHPAVAA 293
Cdd:NF040586 783 LALDLRATGRTEEAEELRADTLARLRRVLGPDHPDTVA 820
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
339-406 |
5.35e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.86 E-value: 5.35e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2130968055 339 NLALLCQNQGKYEAVERYYRRALAiyegqLGPDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 406
Cdd:pfam13432 2 ALARAALRAGDYDDAAAALEAALA-----RFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAA 64
|
|
| PEP_TPR_lipo |
TIGR02917 |
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ... |
232-406 |
6.73e-04 |
|
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Pssm-ID: 274350 [Multi-domain] Cd Length: 899 Bit Score: 42.76 E-value: 6.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 232 KQALEDLERTSGRgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIrestlgrdHPAVAATLNNLAVLYGKRGKYKEA 311
Cdd:TIGR02917 618 NKAVSSFKKLLAL-QPDSALALLLLADAYAVMKNYAKAITSLKRALEL--------KPDNTEAQIGLAQLLLAAKRTESA 688
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 312 EPLCQRALEIREKvlgtdHPDVAKQLNNLALLcqnQGKYEAVERYYRRALAIYEG-----QLG----------------- 369
Cdd:TIGR02917 689 KKIAKSLQKQHPK-----AALGFELEGDLYLR---QKDYPAAIQAYRKALKRAPSsqnaiKLHrallasgntaeavktle 760
|
170 180 190 200
....*....|....*....|....*....|....*....|
gi 2130968055 370 ---PDNPNVARTKNNLASCYLKQGKYAEAETLYKEILTRA 406
Cdd:TIGR02917 761 awlKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKA 800
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
256-321 |
7.85e-04 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 38.09 E-value: 7.85e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2130968055 256 LALVYRDQNKYKEAAHLLNDALsiresTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEI 321
Cdd:pfam13432 3 LARAALRAGDYDDAAAALEAAL-----ARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRA 63
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
334-365 |
9.03e-04 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 37.02 E-value: 9.03e-04
10 20 30
....*....|....*....|....*....|..
gi 2130968055 334 AKQLNNLALLCQNQGKYEAVERYYRRALAIYE 365
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
|
|
| TPR_7 |
pfam13176 |
Tetratricopeptide repeat; |
294-327 |
1.14e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 433012 [Multi-domain] Cd Length: 36 Bit Score: 36.75 E-value: 1.14e-03
10 20 30
....*....|....*....|....*....|....
gi 2130968055 294 TLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLG 327
Cdd:pfam13176 1 ALLNLGRIYRKLGDYDEAISLYEQALALAKDPYD 34
|
|
| PRK11447 |
PRK11447 |
cellulose synthase subunit BcsC; Provisional |
206-389 |
1.19e-03 |
|
cellulose synthase subunit BcsC; Provisional
Pssm-ID: 183140 [Multi-domain] Cd Length: 1157 Bit Score: 41.99 E-value: 1.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 206 ARLRTLHNLviqyaAQGRYEVAVPLCKQALedlertsgRGHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTLG 285
Cdd:PRK11447 272 ARAQGLAAV-----DSGQGGKAIPELQQAV--------RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN 338
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 286 RDHPAVAATLNN--LAVLYG----KRGKYKEAEPLCQRALEIREK----VLGTDhpDVAkqlnnLAllcqnQGKYEAVER 355
Cdd:PRK11447 339 RDKWESLLKVNRywLLIQQGdaalKANNLAQAERLYQQARQVDNTdsyaVLGLG--DVA-----MA-----RKDYAAAER 406
|
170 180 190
....*....|....*....|....*....|....
gi 2130968055 356 YYRRALaiyegQLGPDNPNVARtknNLASCYLKQ 389
Cdd:PRK11447 407 YYQQAL-----RMDPGNTNAVR---GLANLYRQQ 432
|
|
| Mgr3-like |
cd24145 |
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ... |
261-406 |
1.44e-03 |
|
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.
Pssm-ID: 467945 [Multi-domain] Cd Length: 307 Bit Score: 41.18 E-value: 1.44e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 261 RDQNKYKEAAHLLNDA--LSIRESTLGRDHPAVAATLNNLAVLYGKRGKYKEAEPLCQRALEIREKVLGTDHPdvAKQ-- 336
Cdd:cd24145 114 SELGKWELRERLLKKAveILLKLGELWMSPSEVGAFLEELATAYDLYGRFCLALPLYMQALSLKGQILLSQAN--CHSlv 191
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 337 -LNNLAL-LCQNQGK---------------------YEAVERYYRRALAIYEgqlgpDNPNVARTKN----------NLA 383
Cdd:cd24145 192 lMNNEAAeLALHALRkplsstlieasrlpqksrdqlLEAALKWAQKALDVAK-----SIKPKDRDPEcdqacalalyNLG 266
|
170 180
....*....|....*....|...
gi 2130968055 384 SCYLKQGKYAEAETLYKEILTRA 406
Cdd:cd24145 267 VIAEMLGNLDEARKLYKEAISLA 289
|
|
| PilF |
COG3063 |
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures]; |
205-284 |
1.71e-03 |
|
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
Pssm-ID: 442297 [Multi-domain] Cd Length: 94 Bit Score: 37.84 E-value: 1.71e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 205 PARLRTLHNLVIQYAAQGRYEVAVPLcKQALEDlertsgrgHPDVATMLNILALVYRDQNKYKEAAHLLNDALSIRESTL 284
Cdd:COG3063 23 PDNADALNNLGLLLLEQGRYDEAIAL-EKALKL--------DPNNAEALLNLAELLLELGDYDEALAYLERALELDPSAL 93
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
33-148 |
2.48e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 2.48e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 33 LEALHSEHQAVLQSLSHTIECLQQGGHEEGLVHEKARQLRRSMENIELGLSEAQ-VMLALASHLSTVESEKQKLRAQVRR 111
Cdd:TIGR02168 234 LEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQkELYALANEISRLEQQKQILRERLAN 313
|
90 100 110
....*....|....*....|....*....|....*..
gi 2130968055 112 LCQENQWLRDELAGTQQRLQRSEQAVAQLEEEKKHLE 148
Cdd:TIGR02168 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELK 350
|
|
| TPR_1 |
pfam00515 |
Tetratricopeptide repeat; |
376-403 |
4.63e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 459840 [Multi-domain] Cd Length: 34 Bit Score: 35.09 E-value: 4.63e-03
10 20
....*....|....*....|....*...
gi 2130968055 376 ARTKNNLASCYLKQGKYAEAETLYKEIL 403
Cdd:pfam00515 1 AKALYNLGNAYFKLGKYDEALEYYEKAL 28
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
376-406 |
5.59e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.73 E-value: 5.59e-03
10 20 30
....*....|....*....|....*....|.
gi 2130968055 376 ARTKNNLASCYLKQGKYAEAETLYKEILTRA 406
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALELD 31
|
|
| TPR_19 |
pfam14559 |
Tetratricopeptide repeat; |
347-403 |
5.63e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 434038 [Multi-domain] Cd Length: 65 Bit Score: 35.64 E-value: 5.63e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 2130968055 347 QGKYEAVERYYRRALAIYegqlgPDNPNVartKNNLASCYLKQGKYAEAETLYKEIL 403
Cdd:pfam14559 1 EGDYAEALELLEQALAED-----PDNAEA---RLGLAEALLALGRLDEAEALLAALP 49
|
|
| TPR_16 |
pfam13432 |
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ... |
218-277 |
6.26e-03 |
|
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.
Pssm-ID: 433202 [Multi-domain] Cd Length: 68 Bit Score: 35.77 E-value: 6.26e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2130968055 218 YAAQGRYEVAVPLCKQALEdlertSGRGHPDVATMLNILALVYRDQNKYKEAAHLLNDAL 277
Cdd:pfam13432 7 ALRAGDYDDAAAALEAALA-----RFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAAL 61
|
|
| TPR |
smart00028 |
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ... |
334-363 |
7.37e-03 |
|
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Pssm-ID: 197478 [Multi-domain] Cd Length: 34 Bit Score: 34.34 E-value: 7.37e-03
10 20 30
....*....|....*....|....*....|
gi 2130968055 334 AKQLNNLALLCQNQGKYEAVERYYRRALAI 363
Cdd:smart00028 1 AEALYNLGNAYLKLGDYDEALEYYEKALEL 30
|
|
| TPR_10 |
pfam13374 |
Tetratricopeptide repeat; |
375-418 |
7.41e-03 |
|
Tetratricopeptide repeat;
Pssm-ID: 463861 [Multi-domain] Cd Length: 42 Bit Score: 34.79 E-value: 7.41e-03
10 20 30 40
....*....|....*....|....*....|....*....|....
gi 2130968055 375 VARTKNNLASCYLKQGKYAEAETLYKEILTRAHlQEFGsvdDDH 418
Cdd:pfam13374 1 TASSLNNLANALRAQGRYDEAEELLEEALAIRE-RVLG---PDH 40
|
|
|