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Conserved domains on  [gi|2103313005|ref|XP_043816878|]
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alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X2 [Manihot esculenta]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
85-458 6.58e-81

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


:

Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 256.21  E-value: 6.58e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005  85 KPRVCILGGGFGGLYTALRLESLVwadDKKPQVLLVDQSEHFVFKPMLYELLSGAR------------------------ 140
Cdd:COG1252     1 MKRIVIVGGGFAGLEAARRLRKKL---GGDAEVTLIDPNPYHLFQPLLPEVAAGTLspddiaiplrellrragvrfiqge 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 141 -----------------------LVLALGAEAKLDAVPGAAEFAFPFSTLEDARKVDDKLR-LLERRNfgKDSLIRVAVV 196
Cdd:COG1252    78 vtgidpeartvtladgrtlsydyLVIATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLaAFERAE--RRRLLTIVVV 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 197 GCGYSGVELAATISERLK--------DGGVVQAINVE--TTICPTAPPGNREAALKVLSSRKVQLFLGYFVRCIRiasns 266
Cdd:COG1252   156 GGGPTGVELAGELAELLRkllrypgiDPDKVRITLVEagPRILPGLGEKLSEAAEKELEKRGVEVHTGTRVTEVD----- 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 267 ETSATTKENgasediplqhssekyflelqpaekglesQILEADIVLWTVGAK--PLLSQLEsynkpreLPLNARGQTETD 344
Cdd:COG1252   231 ADGVTLEDG----------------------------EEIPADTVIWAAGVKapPLLADLG-------LPTDRRGRVLVD 275

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 345 ETLRVKGHPRIFALGDSSALRDSGGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRNDAAVSpsf 424
Cdd:COG1252   276 PTLQVPGHPNVFAIGDCAAVPDPDGKPVPKTAQAAVQQAKVLAKNIAALLRGKPLKPFRYRDKGCLASLGRGAAVAD--- 352

                         410       420       430
                  ....*....|....*....|....*....|....
gi 2103313005 425 IEGLTLEGPIGHAGRKIAYLIRLPTDEHRLKVGI 458
Cdd:COG1252   353 VGGLKLSGFLAWLLKRAIHLYFLPGFRGRLRVLL 386
PRK15195 super family cl33105
molecular chaperone FimC;
1-113 4.40e-03

molecular chaperone FimC;


The actual alignment was detected with superfamily member PRK15195:

Pssm-ID: 185117 [Multi-domain]  Cd Length: 229  Bit Score: 38.69  E-value: 4.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005   1 MVIMALSSSPALSAFNGISIGATRLgkLFPVSPRWSicSPSFTNSPRRRgfRFVASSAIGKNEGVAEISQGETPPRIYTW 80
Cdd:PRK15195   10 IIIFYLIISASVHAAGGIALGATRV--IYPADAKQT--SLAIRNSHTNE--RYLVNSWIENSSGVKEKSFIVTPPLFVSE 83

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2103313005  81 PDNRKPRVCIlgggFGGLYTALRLESLVWADDK 113
Cdd:PRK15195   84 PKSENTLRII----YAGPPLAADRESLFWMNVK 112
 
Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
85-458 6.58e-81

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 256.21  E-value: 6.58e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005  85 KPRVCILGGGFGGLYTALRLESLVwadDKKPQVLLVDQSEHFVFKPMLYELLSGAR------------------------ 140
Cdd:COG1252     1 MKRIVIVGGGFAGLEAARRLRKKL---GGDAEVTLIDPNPYHLFQPLLPEVAAGTLspddiaiplrellrragvrfiqge 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 141 -----------------------LVLALGAEAKLDAVPGAAEFAFPFSTLEDARKVDDKLR-LLERRNfgKDSLIRVAVV 196
Cdd:COG1252    78 vtgidpeartvtladgrtlsydyLVIATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLaAFERAE--RRRLLTIVVV 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 197 GCGYSGVELAATISERLK--------DGGVVQAINVE--TTICPTAPPGNREAALKVLSSRKVQLFLGYFVRCIRiasns 266
Cdd:COG1252   156 GGGPTGVELAGELAELLRkllrypgiDPDKVRITLVEagPRILPGLGEKLSEAAEKELEKRGVEVHTGTRVTEVD----- 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 267 ETSATTKENgasediplqhssekyflelqpaekglesQILEADIVLWTVGAK--PLLSQLEsynkpreLPLNARGQTETD 344
Cdd:COG1252   231 ADGVTLEDG----------------------------EEIPADTVIWAAGVKapPLLADLG-------LPTDRRGRVLVD 275

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 345 ETLRVKGHPRIFALGDSSALRDSGGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRNDAAVSpsf 424
Cdd:COG1252   276 PTLQVPGHPNVFAIGDCAAVPDPDGKPVPKTAQAAVQQAKVLAKNIAALLRGKPLKPFRYRDKGCLASLGRGAAVAD--- 352

                         410       420       430
                  ....*....|....*....|....*....|....
gi 2103313005 425 IEGLTLEGPIGHAGRKIAYLIRLPTDEHRLKVGI 458
Cdd:COG1252   353 VGGLKLSGFLAWLLKRAIHLYFLPGFRGRLRVLL 386
PTZ00318 PTZ00318
NADH dehydrogenase-like protein; Provisional
 84-461 3.29e-24

NADH dehydrogenase-like protein; Provisional


Pssm-ID: 185553 [Multi-domain]  Cd Length: 424  Bit Score: 104.46  E-value: 3.29e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005  84 RKPRVCILGGGFGGLYTALRLeslvwaDDKKPQVLLVDQSEHFVFKPMLYELLSGA------------------------ 139
Cdd:PTZ00318    9 KKPNVVVLGTGWAGAYFVRNL------DPKKYNITVISPRNHMLFTPLLPQTTTGTlefrsicepvrpalaklpnrylra 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 140 ---------------------------------RLVLALGAEAKLDAVPGAAEFAFPFSTLEDARKVDDKL-RLLERRNF 185
Cdd:PTZ00318   83 vvydvdfeekrvkcgvvsksnnanvntfsvpydKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIvQCIERASL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 186 G------KDSLIRVAVVGCGYSGVELAATISERLKDggvvQAINVETTICPTAPPGNREAALKVLSS------RKVQLFL 253
Cdd:PTZ00318  163 PttsveeRKRLLHFVVVGGGPTGVEFAAELADFFRD----DVRNLNPELVEECKVTVLEAGSEVLGSfdqalrKYGQRRL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 254 GYfvRCIRIASNSETSATTKENGASEDiplqhssekyflelqpaekgleSQILEADIVLWT--VGAKPLLSQLESYNKpr 331
Cdd:PTZ00318  239 RR--LGVDIRTKTAVKEVLDKEVVLKD----------------------GEVIPTGLVVWStgVGPGPLTKQLKVDKT-- 292

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 332 elplnARGQTETDETLRVKGHPRIFALGDSSALRDsggKLLPATAQVAFQQADFAGWNLWAAINDRPLL-PFRFQNLGEM 410
Cdd:PTZ00318  293 -----SRGRISVDDHLRVKPIPNVFALGDCAANEE---RPLPTLAQVASQQGVYLAKEFNNELKGKPMSkPFVYRSLGSL 364

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2103313005 411 MTLGRNDAAVSpsfIEGLTLEGPIGHAGRKIAYLIRLPTDEHRLKVGISWL 461
Cdd:PTZ00318  365 AYLGNYSAIVQ---LGAFDLSGFKALLFWRSAYLTILGSWRSKLYVLVNWA 412
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 86-383 1.78e-21

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 94.69  E-value: 1.78e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005  86 PRVCILGGGFGGLYTALRLeslvwaDDKKPQVLLVDQSEHFV-FKPMLYELLSGA------------------------- 139
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTL------AQLGGKVTLIEDEGTCPyGGCVLSKALLGAaeapeiaslwadlykrkeevvkkln 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 140 -------------------------------------RLVLALGAEAKLDAVPGAAEFAFPF-STLEDArkvdDKLRLLE 181
Cdd:pfam07992  75 ngievllgtevvsidpgakkvvleelvdgdgetitydRLVIATGARPRLPPIPGVELNVGFLvRTLDSA----EALRLKL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 182 RRNfgkdsliRVAVVGCGYSGVELAATISERLKDGGVVQAinvETTICPTAPPGNREAALKVLSSRKVQLFLGYFVRciR 261
Cdd:pfam07992 151 LPK-------RVVVVGGGYIGVELAAALAKLGKEVTLIEA---LDRLLRAFDEEISAALEKALEKNGVEVRLGTSVK--E 218

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 262 IASNSETSATTKENGasediplqhssekyflelqpaekglesQILEADIVLWTVGAKPLLSQLESYNkpreLPLNARGQT 341
Cdd:pfam07992 219 IIGDGDGVEVILKDG---------------------------TEIDADLVVVAIGRRPNTELLEAAG----LELDERGGI 267

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 2103313005 342 ETDETLRVKgHPRIFALGDssalrdsGGKLLPATAQVAFQQA 383
Cdd:pfam07992 268 VVDEYLRTS-VPGIYAAGD-------CRVGGPELAQNAVAQG 301
PRK15195 PRK15195
molecular chaperone FimC;
1-113 4.40e-03

molecular chaperone FimC;


Pssm-ID: 185117 [Multi-domain]  Cd Length: 229  Bit Score: 38.69  E-value: 4.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005   1 MVIMALSSSPALSAFNGISIGATRLgkLFPVSPRWSicSPSFTNSPRRRgfRFVASSAIGKNEGVAEISQGETPPRIYTW 80
Cdd:PRK15195   10 IIIFYLIISASVHAAGGIALGATRV--IYPADAKQT--SLAIRNSHTNE--RYLVNSWIENSSGVKEKSFIVTPPLFVSE 83

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2103313005  81 PDNRKPRVCIlgggFGGLYTALRLESLVWADDK 113
Cdd:PRK15195   84 PKSENTLRII----YAGPPLAADRESLFWMNVK 112
 
Name Accession Description Interval E-value
Ndh COG1252
NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];
85-458 6.58e-81

NADH dehydrogenase, FAD-containing subunit [Energy production and conversion];


Pssm-ID: 440864 [Multi-domain]  Cd Length: 386  Bit Score: 256.21  E-value: 6.58e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005  85 KPRVCILGGGFGGLYTALRLESLVwadDKKPQVLLVDQSEHFVFKPMLYELLSGAR------------------------ 140
Cdd:COG1252     1 MKRIVIVGGGFAGLEAARRLRKKL---GGDAEVTLIDPNPYHLFQPLLPEVAAGTLspddiaiplrellrragvrfiqge 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 141 -----------------------LVLALGAEAKLDAVPGAAEFAFPFSTLEDARKVDDKLR-LLERRNfgKDSLIRVAVV 196
Cdd:COG1252    78 vtgidpeartvtladgrtlsydyLVIATGSVTNFFGIPGLAEHALPLKTLEDALALRERLLaAFERAE--RRRLLTIVVV 155

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 197 GCGYSGVELAATISERLK--------DGGVVQAINVE--TTICPTAPPGNREAALKVLSSRKVQLFLGYFVRCIRiasns 266
Cdd:COG1252   156 GGGPTGVELAGELAELLRkllrypgiDPDKVRITLVEagPRILPGLGEKLSEAAEKELEKRGVEVHTGTRVTEVD----- 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 267 ETSATTKENgasediplqhssekyflelqpaekglesQILEADIVLWTVGAK--PLLSQLEsynkpreLPLNARGQTETD 344
Cdd:COG1252   231 ADGVTLEDG----------------------------EEIPADTVIWAAGVKapPLLADLG-------LPTDRRGRVLVD 275

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 345 ETLRVKGHPRIFALGDSSALRDSGGKLLPATAQVAFQQADFAGWNLWAAINDRPLLPFRFQNLGEMMTLGRNDAAVSpsf 424
Cdd:COG1252   276 PTLQVPGHPNVFAIGDCAAVPDPDGKPVPKTAQAAVQQAKVLAKNIAALLRGKPLKPFRYRDKGCLASLGRGAAVAD--- 352

                         410       420       430
                  ....*....|....*....|....*....|....
gi 2103313005 425 IEGLTLEGPIGHAGRKIAYLIRLPTDEHRLKVGI 458
Cdd:COG1252   353 VGGLKLSGFLAWLLKRAIHLYFLPGFRGRLRVLL 386
PTZ00318 PTZ00318
NADH dehydrogenase-like protein; Provisional
 84-461 3.29e-24

NADH dehydrogenase-like protein; Provisional


Pssm-ID: 185553 [Multi-domain]  Cd Length: 424  Bit Score: 104.46  E-value: 3.29e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005  84 RKPRVCILGGGFGGLYTALRLeslvwaDDKKPQVLLVDQSEHFVFKPMLYELLSGA------------------------ 139
Cdd:PTZ00318    9 KKPNVVVLGTGWAGAYFVRNL------DPKKYNITVISPRNHMLFTPLLPQTTTGTlefrsicepvrpalaklpnrylra 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 140 ---------------------------------RLVLALGAEAKLDAVPGAAEFAFPFSTLEDARKVDDKL-RLLERRNF 185
Cdd:PTZ00318   83 vvydvdfeekrvkcgvvsksnnanvntfsvpydKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIvQCIERASL 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 186 G------KDSLIRVAVVGCGYSGVELAATISERLKDggvvQAINVETTICPTAPPGNREAALKVLSS------RKVQLFL 253
Cdd:PTZ00318  163 PttsveeRKRLLHFVVVGGGPTGVEFAAELADFFRD----DVRNLNPELVEECKVTVLEAGSEVLGSfdqalrKYGQRRL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 254 GYfvRCIRIASNSETSATTKENGASEDiplqhssekyflelqpaekgleSQILEADIVLWT--VGAKPLLSQLESYNKpr 331
Cdd:PTZ00318  239 RR--LGVDIRTKTAVKEVLDKEVVLKD----------------------GEVIPTGLVVWStgVGPGPLTKQLKVDKT-- 292

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 332 elplnARGQTETDETLRVKGHPRIFALGDSSALRDsggKLLPATAQVAFQQADFAGWNLWAAINDRPLL-PFRFQNLGEM 410
Cdd:PTZ00318  293 -----SRGRISVDDHLRVKPIPNVFALGDCAANEE---RPLPTLAQVASQQGVYLAKEFNNELKGKPMSkPFVYRSLGSL 364

                         410       420       430       440       450
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2103313005 411 MTLGRNDAAVSpsfIEGLTLEGPIGHAGRKIAYLIRLPTDEHRLKVGISWL 461
Cdd:PTZ00318  365 AYLGNYSAIVQ---LGAFDLSGFKALLFWRSAYLTILGSWRSKLYVLVNWA 412
Pyr_redox_2 pfam07992
Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II ...
 86-383 1.78e-21

Pyridine nucleotide-disulphide oxidoreductase; This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.


Pssm-ID: 400379 [Multi-domain]  Cd Length: 301  Bit Score: 94.69  E-value: 1.78e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005  86 PRVCILGGGFGGLYTALRLeslvwaDDKKPQVLLVDQSEHFV-FKPMLYELLSGA------------------------- 139
Cdd:pfam07992   1 YDVVVIGGGPAGLAAALTL------AQLGGKVTLIEDEGTCPyGGCVLSKALLGAaeapeiaslwadlykrkeevvkkln 74

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 140 -------------------------------------RLVLALGAEAKLDAVPGAAEFAFPF-STLEDArkvdDKLRLLE 181
Cdd:pfam07992  75 ngievllgtevvsidpgakkvvleelvdgdgetitydRLVIATGARPRLPPIPGVELNVGFLvRTLDSA----EALRLKL 150

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 182 RRNfgkdsliRVAVVGCGYSGVELAATISERLKDGGVVQAinvETTICPTAPPGNREAALKVLSSRKVQLFLGYFVRciR 261
Cdd:pfam07992 151 LPK-------RVVVVGGGYIGVELAAALAKLGKEVTLIEA---LDRLLRAFDEEISAALEKALEKNGVEVRLGTSVK--E 218

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 262 IASNSETSATTKENGasediplqhssekyflelqpaekglesQILEADIVLWTVGAKPLLSQLESYNkpreLPLNARGQT 341
Cdd:pfam07992 219 IIGDGDGVEVILKDG---------------------------TEIDADLVVVAIGRRPNTELLEAAG----LELDERGGI 267

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 2103313005 342 ETDETLRVKgHPRIFALGDssalrdsGGKLLPATAQVAFQQA 383
Cdd:pfam07992 268 VVDEYLRTS-VPGIYAAGD-------CRVGGPELAQNAVAQG 301
FadH2 COG0446
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase ...
 102-390 4.32e-15

NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism];


Pssm-ID: 440215 [Multi-domain]  Cd Length: 322  Bit Score: 76.00  E-value: 4.32e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 102 LRLESLVWA-DDKKPQVLLVDQSEhfvfkpmlyelLSGARLVLALGAEAKLDAVPGA-AEFAFPFSTLEDARKVDDKLRL 179
Cdd:COG0446    53 VRTGTEVTAiDPEAKTVTLRDGET-----------LSYDKLVLATGARPRPPPIPGLdLPGVFTLRTLDDADALREALKE 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 180 LErrnfGKdsliRVAVVGCGYSGVELAATISERlkdGGVVQAINVETTICPTAPPGNREAALKVLSSRKVQLFLGYFVrc 259
Cdd:COG0446   122 FK----GK----RAVVIGGGPIGLELAEALRKR---GLKVTLVERAPRLLGVLDPEMAALLEEELREHGVELRLGETV-- 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 260 IRIASNSETSATTKENGAsediplqhssekyflelqpaekglesqiLEADIVLWTVGAKP---LLSQLesynkprELPLN 336
Cdd:COG0446   189 VAIDGDDKVAVTLTDGEE----------------------------IPADLVVVAPGVRPnteLAKDA-------GLALG 233

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2103313005 337 ARGQTETDETLRVkGHPRIFALGDSSALRD--SGGKLLPATAQVAFQQADFAGWNL 390
Cdd:COG0446   234 ERGWIKVDETLQT-SDPDVYAAGDCAEVPHpvTGKTVYIPLASAANKQGRVAAENI 288
NirB COG1251
NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];
140-390 1.53e-07

NAD(P)H-nitrite reductase, large subunit [Energy production and conversion];


Pssm-ID: 440863 [Multi-domain]  Cd Length: 402  Bit Score: 53.61  E-value: 1.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 140 RLVLALGAEAKLDAVPGA-AEFAFPFSTLEDARkvddklRLLERRNFGKdsliRVAVVGCGYSGVELAATiserLKDGGv 218
Cdd:COG1251   101 KLVLATGSRPRVPPIPGAdLPGVFTLRTLDDAD------ALRAALAPGK----RVVVIGGGLIGLEAAAA----LRKRG- 165

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 219 vqainVETTICPTAP-PGNR----EAA---LKVLSSRKVQLFLGYFVRCIRiASNSETSATTKeNGasediplqhsseky 290
Cdd:COG1251   166 -----LEVTVVERAPrLLPRqldeEAGallQRLLEALGVEVRLGTGVTEIE-GDDRVTGVRLA-DG-------------- 224

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 291 flelqpaekglesQILEADIVLWTVGAKP---LLSQLesynkprELPLNaRGqTETDETLRVkGHPRIFALGDSSALRDS 367
Cdd:COG1251   225 -------------EELPADLVVVAIGVRPnteLARAA-------GLAVD-RG-IVVDDYLRT-SDPDIYAAGDCAEHPGP 281

                         250       260
                  ....*....|....*....|....
gi 2103313005 368 G-GKLLPATAQVAFQQADFAGWNL 390
Cdd:COG1251   282 VyGRRVLELVAPAYEQARVAAANL 305
Lpd COG1249
Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex ...
 134-390 6.86e-07

Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase is part of the Pathway/BioSystem: Glycine cleavagePyruvate oxidation


Pssm-ID: 440861 [Multi-domain]  Cd Length: 456  Bit Score: 51.63  E-value: 6.86e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 134 ELLSGARLVLALGAEAKLDAVPGAAEFafPFSTLEDArkvddklrlLERRNFGKdsliRVAVVGCGYSGVELaATISERL 213
Cdd:COG1249   127 ETLTADHIVIATGSRPRVPPIPGLDEV--RVLTSDEA---------LELEELPK----SLVVIGGGYIGLEF-AQIFARL 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 214 kdgGV-VQAINVETTICPTAPPGNREAALKVLSSRKVQLFLGYFVrciriasnseTSATTKENGasediplqhssekyfL 292
Cdd:COG1249   191 ---GSeVTLVERGDRLLPGEDPEISEALEKALEKEGIDILTGAKV----------TSVEKTGDG---------------V 242

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 293 ELQpAEKGLESQILEADIVLWTVGAKPLLSQ--LESynkpRELPLNARGQTETDETLRVkGHPRIFALGDSsalrdSGGK 370
Cdd:COG1249   243 TVT-LEDGGGEEAVEADKVLVATGRRPNTDGlgLEA----AGVELDERGGIKVDEYLRT-SVPGIYAIGDV-----TGGP 311

                         250       260
                  ....*....|....*....|
gi 2103313005 371 LLpatAQVAFQQADFAGWNL 390
Cdd:COG1249   312 QL---AHVASAEGRVAAENI 328
PRK06292 PRK06292
dihydrolipoamide dehydrogenase; Validated
 192-402 9.20e-07

dihydrolipoamide dehydrogenase; Validated


Pssm-ID: 235774 [Multi-domain]  Cd Length: 460  Bit Score: 50.95  E-value: 9.20e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 192 RVAVVGCGYSGVELAATISeRLkdgGV-VQAINVETTICPTAPPGNREAALKVLSSRkvqlflgyfvrcIRIASNSETSA 270
Cdd:PRK06292  171 SLAVIGGGVIGLELGQALS-RL---GVkVTVFERGDRILPLEDPEVSKQAQKILSKE------------FKIKLGAKVTS 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 271 TTKENGASEDIplqhssekyflelqpAEKGLESQILEADIVLWTVGAKPLLSQLesynKPREL--PLNARGQTETDETLR 348
Cdd:PRK06292  235 VEKSGDEKVEE---------------LEKGGKTETIEADYVLVATGRRPNTDGL----GLENTgiELDERGRPVVDEHTQ 295

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2103313005 349 vKGHPRIFALGDSsalrdSGGKLLpatAQVAFQQADFAGWNLWAAIN---DRPLLPF 402
Cdd:PRK06292  296 -TSVPGIYAAGDV-----NGKPPL---LHEAADEGRIAAENAAGDVAggvRYHPIPS 343
PRK06416 PRK06416
dihydrolipoamide dehydrogenase; Reviewed
 192-386 5.42e-06

dihydrolipoamide dehydrogenase; Reviewed


Pssm-ID: 235798 [Multi-domain]  Cd Length: 462  Bit Score: 48.60  E-value: 5.42e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 192 RVAVVGCGYSGVELAatiserlkdgGVVQAINVETTICPTAP---PGNREA----ALKVLSSRKVQLFLGYFVrcirias 264
Cdd:PRK06416  174 SLVVIGGGYIGVEFA----------SAYASLGAEVTIVEALPrilPGEDKEisklAERALKKRGIKIKTGAKA------- 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 265 nseTSATTKENGASEDIplqhssekyflelqpaEKGLESQILEADIVLWTVGAKPLLSqlesynkprELPLNA------R 338
Cdd:PRK06416  237 ---KKVEQTDDGVTVTL----------------EDGGKEETLEADYVLVAVGRRPNTE---------NLGLEElgvktdR 288

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2103313005 339 GQTETDETLRvKGHPRIFALGDSsalrdSGGkllPATAQVAFQQADFA 386
Cdd:PRK06416  289 GFIEVDEQLR-TNVPNIYAIGDI-----VGG---PMLAHKASAEGIIA 327
PRK09754 PRK09754
phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
 140-371 6.27e-06

phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional


Pssm-ID: 170080 [Multi-domain]  Cd Length: 396  Bit Score: 48.38  E-value: 6.27e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 140 RLVLALGAEAK----LDAVpgaAEFAFPFSTLEDARkvddklRLLERRNFGKdsliRVAVVGCGYSGVELAATISERlkd 215
Cdd:PRK09754  103 QLFIATGAAARplplLDAL---GERCFTLRHAGDAA------RLREVLQPER----SVVIVGAGTIGLELAASATQR--- 166

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005 216 GGVVQAINVETTIC-PTAPPGNREAALKVLSSRKVQLFLgyfvrciriasnsETSATTKENGasediplqhssEKYFLEL 294
Cdd:PRK09754  167 RCKVTVIELAATVMgRNAPPPVQRYLLQRHQQAGVRILL-------------NNAIEHVVDG-----------EKVELTL 222

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2103313005 295 QPAEKglesqiLEADIVLWTVGAKpLLSQLesynkPRELPLNARGQTETDETLRVkGHPRIFALGDSSALRDSGGKL 371
Cdd:PRK09754  223 QSGET------LQADVVIYGIGIS-ANDQL-----AREANLDTANGIVIDEACRT-CDPAIFAGGDVAITRLDNGAL 286
PRK15195 PRK15195
molecular chaperone FimC;
1-113 4.40e-03

molecular chaperone FimC;


Pssm-ID: 185117 [Multi-domain]  Cd Length: 229  Bit Score: 38.69  E-value: 4.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2103313005   1 MVIMALSSSPALSAFNGISIGATRLgkLFPVSPRWSicSPSFTNSPRRRgfRFVASSAIGKNEGVAEISQGETPPRIYTW 80
Cdd:PRK15195   10 IIIFYLIISASVHAAGGIALGATRV--IYPADAKQT--SLAIRNSHTNE--RYLVNSWIENSSGVKEKSFIVTPPLFVSE 83

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2103313005  81 PDNRKPRVCIlgggFGGLYTALRLESLVWADDK 113
Cdd:PRK15195   84 PKSENTLRII----YAGPPLAADRESLFWMNVK 112
PRK12771 PRK12771
putative glutamate synthase (NADPH) small subunit; Provisional
 295-360 6.81e-03

putative glutamate synthase (NADPH) small subunit; Provisional


Pssm-ID: 237198 [Multi-domain]  Cd Length: 564  Bit Score: 39.09  E-value: 6.81e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2103313005 295 QPAEKglESQILEADIVLWTVGAKPLLSQLESYNKPRelplNARGQTETDETLRVKGHPRIFALGD 360
Cdd:PRK12771  358 SPVTG--EEETLEADLVVLAIGQDIDSAGLESVPGVE----VGRGVVQVDPNFMMTGRPGVFAGGD 417
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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