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Conserved domains on  [gi|2024348942|ref|XP_040562939|]
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telomeric repeat-binding factor 2 isoform X3 [Gallus gallus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TRFH super family cl02779
Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain ...
 20-190 1.88e-80

Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.


The actual alignment was detected with superfamily member cd00280:

Pssm-ID: 413471  Cd Length: 200  Bit Score: 252.75  E-value: 1.88e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942  20 SDDREQAVNRWVLQFYFHQAVAAYRAGRNRDFRQLRDVMQALLVRPLEREPAVAQMLRVMQFLSRIEEGENLDCTFDKET 99
Cdd:cd00280     1 EADAEAVANRWVLDFYFHSACRAFREGRYEDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 100 ELTPLESAIGILQLIAKEFSVPEKKIELIHKVLKEAAVIVCIKNKEFSKALAVLKRHM-----------------EKDTG 162
Cdd:cd00280    81 ELTPLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFsdpesqklrmkllmiirEKDPA 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2024348942 163 N-----------QQYMFQFLKTYVDTSE-PLLVTMMKSLN 190
Cdd:cd00280   161 HpvlqnfsyshfMQKMKSYVELVLDEKEsPFLLKAAAKVV 200
SANT_TRF cd11660
Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human ...
 585-633 6.06e-20

Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1.


:

Pssm-ID: 212558 [Multi-domain]  Cd Length: 50  Bit Score: 83.39  E-value: 6.06e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2024348942 585 QKWTVQESEWIKDGVRKYGEGRWKTISEKYPF-QNRTSVQIKDRYRTMKK 633
Cdd:cd11660     1 RKWTDEEDEALVEGVEKYGVGNWAKILKDYFFvNNRTSVDLKDKWRNLKK 50
PTZ00449 super family cl33186
104 kDa microneme/rhoptry antigen; Provisional
 169-491 7.01e-06

104 kDa microneme/rhoptry antigen; Provisional


The actual alignment was detected with superfamily member PTZ00449:

Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 49.30  E-value: 7.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 169 QFLKTYVDTSEPLLVTMMKSLNSEHAEEPK---RSSVTPESPSRTEDQEEAYEPLRRVKHSvgtlrraeTAGGVAGAPSC 245
Cdd:PTZ00449  483 QEIKKLIKKSKKKLAPIEEEDSDKHDEPPEgpeASGLPPKAPGDKEGEEGEHEDSKESDEP--------KEGGKPGETKE 554

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 246 PEMAKDPTGAPEHvgtvkdavrAPCPAESTEDSQGAPRCAETARDvmgapsPSEMTKdllgaPKCTETARDVVRAPSPA- 324
Cdd:PTZ00449  555 GEVGKKPGPAKEH---------KPSKIPTLSKKPEFPKDPKHPKD------PEEPKK-----PKRPRSAQRPTRPKSPKl 614

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 325 -ESTKDPvGTPGHAETARDVARAPSPAETTKnlPGAPECADTVKNTVRAPSPA--------ERRKD--LVRAPKRAETAR 393
Cdd:PTZ00449  615 pELLDIP-KSPKRPESPKSPKRPPPPQRPSS--PERPEGPKIIKSPKPPKSPKppfdpkfkEKFYDdyLDAAAKSKETKT 691

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 394 DVVRAPSPAERVKDTVGA--------------------SEPMKSASYPTASQPriaavKSSKVFSVPVE----ISEQPAA 449
Cdd:PTZ00449  692 TVVLDESFESILKETLPEtpgtpfttprplppklprdeEFPFEPIGDPDAEQP-----DDIEFFTPPEEertfFHETPAD 766

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2024348942 450 AAP------------VHAGVSSRDLERTKRRKEEKNQGSETLDSPEIPHKSKRL 491
Cdd:PTZ00449  767 TPLpdilaeefkeedIHAETGEPDEAMKRPDSPSEHEDKPPGDHPSLPKKRHRL 820
 
Name Accession Description Interval E-value
TRFH cd00280
Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain ...
 20-190 1.88e-80

Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.


Pssm-ID: 238174  Cd Length: 200  Bit Score: 252.75  E-value: 1.88e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942  20 SDDREQAVNRWVLQFYFHQAVAAYRAGRNRDFRQLRDVMQALLVRPLEREPAVAQMLRVMQFLSRIEEGENLDCTFDKET 99
Cdd:cd00280     1 EADAEAVANRWVLDFYFHSACRAFREGRYEDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 100 ELTPLESAIGILQLIAKEFSVPEKKIELIHKVLKEAAVIVCIKNKEFSKALAVLKRHM-----------------EKDTG 162
Cdd:cd00280    81 ELTPLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFsdpesqklrmkllmiirEKDPA 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2024348942 163 N-----------QQYMFQFLKTYVDTSE-PLLVTMMKSLN 190
Cdd:cd00280   161 HpvlqnfsyshfMQKMKSYVELVLDEKEsPFLLKAAAKVV 200
TRF pfam08558
Telomere repeat binding factor (TRF); Telomere repeat binding factor (TRF) family proteins are ...
 30-189 4.79e-33

Telomere repeat binding factor (TRF); Telomere repeat binding factor (TRF) family proteins are important for the regulation of telomere stability. The two related human TRF proteins hTRF1 and hTRF2 form homodimers and bind directly to telomeric TTAGGG repeats via the myb DNA binding domain pfam00249 at the carboxy terminus. TRF1 is implicated in telomere length regulation and TRF2 in telomere protection. Other telomere complex associated proteins are recruited through their interaction with either TRF1 or TRF2. The fission yeast protein Taz1p (telomere-associated in Schizosaccharomyces pombe) has similarity to both hTRF1 and hTRF2 and may perform the dual functions of TRF1 and TRF2 at fission yeast telomeres. This domain is composed of multiple alpha helices arranged in a solenoid conformation similar to TPR repeats. The fungal members have now also been found to carry two double strand telomeric repeat binding factors.


Pssm-ID: 400735  Cd Length: 212  Bit Score: 125.98  E-value: 4.79e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942  30 WVLQFYFHQAVAAYRAGRNR-----------DFRQLRDVMQALLVRPLEREPAVAQMLR----------VMQFLSRIEEG 88
Cdd:pfam08558   3 WVLDNLSTQLLRALREGPYTdvlaivsepdsEFRESFDILESLFERTKKLYSTRSPLLSpsilkiresyIMQTLRRINLG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942  89 ENLDCTFDkETELTPLESAIGILQLIAKEFSVPEKKIELIHKVLKEAAVIVCIKNKEFSKALAVLKRHMEKDTGNqqYMF 168
Cdd:pfam08558  83 TFLDSVFG-NLEVGFLELAENFLDIFCPEDGKLLKPQGVLYLDLKTQAYIVALKEGPFKSASEILDKLFPDDLAD--ILK 159

                         170       180
                  ....*....|....*....|.
gi 2024348942 169 QFLKTYVDTSEPLLVTMMKSL 189
Cdd:pfam08558 160 QRNDKLLTPSETDFVERCKKR 180
SANT_TRF cd11660
Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human ...
 585-633 6.06e-20

Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1.


Pssm-ID: 212558 [Multi-domain]  Cd Length: 50  Bit Score: 83.39  E-value: 6.06e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2024348942 585 QKWTVQESEWIKDGVRKYGEGRWKTISEKYPF-QNRTSVQIKDRYRTMKK 633
Cdd:cd11660     1 RKWTDEEDEALVEGVEKYGVGNWAKILKDYFFvNNRTSVDLKDKWRNLKK 50
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
584-633 2.27e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 58.77  E-value: 2.27e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 2024348942  584 KQKWTVQESEWIKDGVRKYGEGRWKTISEKYPfqNRTSVQIKDRYRTMKK 633
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP--GRTAEQCRERWRNLLK 48
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 584-632 6.05e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 57.51  E-value: 6.05e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2024348942 584 KQKWTVQESEWIKDGVRKYGeGRWKTISEKYPfqNRTSVQIKDRYRTMK 632
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLP--GRTDNQCKNRWQNYL 46
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 169-491 7.01e-06

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 49.30  E-value: 7.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 169 QFLKTYVDTSEPLLVTMMKSLNSEHAEEPK---RSSVTPESPSRTEDQEEAYEPLRRVKHSvgtlrraeTAGGVAGAPSC 245
Cdd:PTZ00449  483 QEIKKLIKKSKKKLAPIEEEDSDKHDEPPEgpeASGLPPKAPGDKEGEEGEHEDSKESDEP--------KEGGKPGETKE 554

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 246 PEMAKDPTGAPEHvgtvkdavrAPCPAESTEDSQGAPRCAETARDvmgapsPSEMTKdllgaPKCTETARDVVRAPSPA- 324
Cdd:PTZ00449  555 GEVGKKPGPAKEH---------KPSKIPTLSKKPEFPKDPKHPKD------PEEPKK-----PKRPRSAQRPTRPKSPKl 614

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 325 -ESTKDPvGTPGHAETARDVARAPSPAETTKnlPGAPECADTVKNTVRAPSPA--------ERRKD--LVRAPKRAETAR 393
Cdd:PTZ00449  615 pELLDIP-KSPKRPESPKSPKRPPPPQRPSS--PERPEGPKIIKSPKPPKSPKppfdpkfkEKFYDdyLDAAAKSKETKT 691

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 394 DVVRAPSPAERVKDTVGA--------------------SEPMKSASYPTASQPriaavKSSKVFSVPVE----ISEQPAA 449
Cdd:PTZ00449  692 TVVLDESFESILKETLPEtpgtpfttprplppklprdeEFPFEPIGDPDAEQP-----DDIEFFTPPEEertfFHETPAD 766

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2024348942 450 AAP------------VHAGVSSRDLERTKRRKEEKNQGSETLDSPEIPHKSKRL 491
Cdd:PTZ00449  767 TPLpdilaeefkeedIHAETGEPDEAMKRPDSPSEHEDKPPGDHPSLPKKRHRL 820
 
Name Accession Description Interval E-value
TRFH cd00280
Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain ...
 20-190 1.88e-80

Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.


Pssm-ID: 238174  Cd Length: 200  Bit Score: 252.75  E-value: 1.88e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942  20 SDDREQAVNRWVLQFYFHQAVAAYRAGRNRDFRQLRDVMQALLVRPLEREPAVAQMLRVMQFLSRIEEGENLDCTFDKET 99
Cdd:cd00280     1 EADAEAVANRWVLDFYFHSACRAFREGRYEDFRRTRDIAEALLVGPLKLTATQLKTLRIMQFLSRIAEGKNLDCQFENDE 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 100 ELTPLESAIGILQLIAKEFSVPEKKIELIHKVLKEAAVIVCIKNKEFSKALAVLKRHM-----------------EKDTG 162
Cdd:cd00280    81 ELTPLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFsdpesqklrmkllmiirEKDPA 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2024348942 163 N-----------QQYMFQFLKTYVDTSE-PLLVTMMKSLN 190
Cdd:cd00280   161 HpvlqnfsyshfMQKMKSYVELVLDEKEsPFLLKAAAKVV 200
TRF pfam08558
Telomere repeat binding factor (TRF); Telomere repeat binding factor (TRF) family proteins are ...
 30-189 4.79e-33

Telomere repeat binding factor (TRF); Telomere repeat binding factor (TRF) family proteins are important for the regulation of telomere stability. The two related human TRF proteins hTRF1 and hTRF2 form homodimers and bind directly to telomeric TTAGGG repeats via the myb DNA binding domain pfam00249 at the carboxy terminus. TRF1 is implicated in telomere length regulation and TRF2 in telomere protection. Other telomere complex associated proteins are recruited through their interaction with either TRF1 or TRF2. The fission yeast protein Taz1p (telomere-associated in Schizosaccharomyces pombe) has similarity to both hTRF1 and hTRF2 and may perform the dual functions of TRF1 and TRF2 at fission yeast telomeres. This domain is composed of multiple alpha helices arranged in a solenoid conformation similar to TPR repeats. The fungal members have now also been found to carry two double strand telomeric repeat binding factors.


Pssm-ID: 400735  Cd Length: 212  Bit Score: 125.98  E-value: 4.79e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942  30 WVLQFYFHQAVAAYRAGRNR-----------DFRQLRDVMQALLVRPLEREPAVAQMLR----------VMQFLSRIEEG 88
Cdd:pfam08558   3 WVLDNLSTQLLRALREGPYTdvlaivsepdsEFRESFDILESLFERTKKLYSTRSPLLSpsilkiresyIMQTLRRINLG 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942  89 ENLDCTFDkETELTPLESAIGILQLIAKEFSVPEKKIELIHKVLKEAAVIVCIKNKEFSKALAVLKRHMEKDTGNqqYMF 168
Cdd:pfam08558  83 TFLDSVFG-NLEVGFLELAENFLDIFCPEDGKLLKPQGVLYLDLKTQAYIVALKEGPFKSASEILDKLFPDDLAD--ILK 159

                         170       180
                  ....*....|....*....|.
gi 2024348942 169 QFLKTYVDTSEPLLVTMMKSL 189
Cdd:pfam08558 160 QRNDKLLTPSETDFVERCKKR 180
SANT_TRF cd11660
Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human ...
 585-633 6.06e-20

Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family; Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1.


Pssm-ID: 212558 [Multi-domain]  Cd Length: 50  Bit Score: 83.39  E-value: 6.06e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 2024348942 585 QKWTVQESEWIKDGVRKYGEGRWKTISEKYPF-QNRTSVQIKDRYRTMKK 633
Cdd:cd11660     1 RKWTDEEDEALVEGVEKYGVGNWAKILKDYFFvNNRTSVDLKDKWRNLKK 50
SANT cd00167
'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric ...
 586-632 2.20e-11

'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.


Pssm-ID: 238096 [Multi-domain]  Cd Length: 45  Bit Score: 58.74  E-value: 2.20e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2024348942 586 KWTVQESEWIKDGVRKYGEGRWKTISEKYPfqNRTSVQIKDRYRTMK 632
Cdd:cd00167     1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP--GRTPKQCRERWRNLL 45
SANT smart00717
SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;
584-633 2.27e-11

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains;


Pssm-ID: 197842 [Multi-domain]  Cd Length: 49  Bit Score: 58.77  E-value: 2.27e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|
gi 2024348942  584 KQKWTVQESEWIKDGVRKYGEGRWKTISEKYPfqNRTSVQIKDRYRTMKK 633
Cdd:smart00717   1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP--GRTAEQCRERWRNLLK 48
Myb_DNA-binding pfam00249
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 584-632 6.05e-11

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 459731 [Multi-domain]  Cd Length: 46  Bit Score: 57.51  E-value: 6.05e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2024348942 584 KQKWTVQESEWIKDGVRKYGeGRWKTISEKYPfqNRTSVQIKDRYRTMK 632
Cdd:pfam00249   1 RGPWTPEEDELLLEAVEKLG-NRWKKIAKLLP--GRTDNQCKNRWQNYL 46
SANT_DMAP1_like cd11658
SANT/myb-like domain of Human Dna Methyltransferase 1 Associated Protein 1-like; These ...
 587-631 3.96e-07

SANT/myb-like domain of Human Dna Methyltransferase 1 Associated Protein 1-like; These proteins are members of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of the DNA-binding Myb domains and is found in a diverse set of proteins.


Pssm-ID: 212556  Cd Length: 46  Bit Score: 47.02  E-value: 3.96e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2024348942 587 WTVQESEWIKDGVRKYGEgRWKTISEKYPFQN-RTSVQIKDRYRTM 631
Cdd:cd11658     1 WTKEETDYLFDLVKRFDL-RWNVILDRYPFQKgRSVEDLKEKYYHL 45
PTZ00449 PTZ00449
104 kDa microneme/rhoptry antigen; Provisional
 169-491 7.01e-06

104 kDa microneme/rhoptry antigen; Provisional


Pssm-ID: 185628 [Multi-domain]  Cd Length: 943  Bit Score: 49.30  E-value: 7.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 169 QFLKTYVDTSEPLLVTMMKSLNSEHAEEPK---RSSVTPESPSRTEDQEEAYEPLRRVKHSvgtlrraeTAGGVAGAPSC 245
Cdd:PTZ00449  483 QEIKKLIKKSKKKLAPIEEEDSDKHDEPPEgpeASGLPPKAPGDKEGEEGEHEDSKESDEP--------KEGGKPGETKE 554

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 246 PEMAKDPTGAPEHvgtvkdavrAPCPAESTEDSQGAPRCAETARDvmgapsPSEMTKdllgaPKCTETARDVVRAPSPA- 324
Cdd:PTZ00449  555 GEVGKKPGPAKEH---------KPSKIPTLSKKPEFPKDPKHPKD------PEEPKK-----PKRPRSAQRPTRPKSPKl 614

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 325 -ESTKDPvGTPGHAETARDVARAPSPAETTKnlPGAPECADTVKNTVRAPSPA--------ERRKD--LVRAPKRAETAR 393
Cdd:PTZ00449  615 pELLDIP-KSPKRPESPKSPKRPPPPQRPSS--PERPEGPKIIKSPKPPKSPKppfdpkfkEKFYDdyLDAAAKSKETKT 691

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 394 DVVRAPSPAERVKDTVGA--------------------SEPMKSASYPTASQPriaavKSSKVFSVPVE----ISEQPAA 449
Cdd:PTZ00449  692 TVVLDESFESILKETLPEtpgtpfttprplppklprdeEFPFEPIGDPDAEQP-----DDIEFFTPPEEertfFHETPAD 766

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2024348942 450 AAP------------VHAGVSSRDLERTKRRKEEKNQGSETLDSPEIPHKSKRL 491
Cdd:PTZ00449  767 TPLpdilaeefkeedIHAETGEPDEAMKRPDSPSEHEDKPPGDHPSLPKKRHRL 820
PHA03247 PHA03247
large tegument protein UL36; Provisional
 191-434 2.82e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.63  E-value: 2.82e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942  191 SEHAEEPKRSSVTPESPSRTEDQEEAyepLRRVKHSvgtlRRAETAGGVAGAPSCPEMAKdPTGAPEHVGTVKDAVRAPC 270
Cdd:PHA03247  2632 SPAANEPDPHPPPTVPPPERPRDDPA---PGRVSRP----RRARRLGRAAQASSPPQRPR-RRAARPTVGSLTSLADPPP 2703

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942  271 PAESTEDsqgAPRCAetardVMGAPSPsemtkdlLGAPKCTETARDVVRAPSPAESTKDPVGTPGHAETARDVARAPSPA 350
Cdd:PHA03247  2704 PPPTPEP---APHAL-----VSATPLP-------PGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPA 2768

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942  351 ETTknlPGAPECADTVKNTVRAPSPAERRKDLVRAPKRAETARDVVRAPSPAERVKDTVGASEPMKSASYPTASQPRIAA 430
Cdd:PHA03247  2769 PAP---PAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGP 2845


                   ....
gi 2024348942  431 VKSS 434
Cdd:PHA03247  2846 PPPS 2849
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
231-452 6.67e-05

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 46.00  E-value: 6.67e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 231 RRAETAGGVAGAPScpEMAKDPTGAPEHVGTVKDAVRAPCPAESTEDSQGAPRCAETARDVMGAPSPSEMTKDLLGAPKC 310
Cdd:PRK07003  394 SAVPAVTAVTGAAG--AALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPP 471

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 311 TETARDVVRAPS-PAESTKDPVGTPGHAETARDVARAPSPAETTKNLPGAPECADTVKNTVRAPSPAERrkdlvRAPKR- 388
Cdd:PRK07003  472 ADSGSASAPASDaPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAA-----APAARa 546

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024348942 389 --AETARDVVRAPS---PAERVKDTVGASEP-MKSASYPTASQPRIAA-VKSSKVFSVPVEISEQPAAAAP 452
Cdd:PRK07003  547 ggAAAALDVLRNAGmrvSSDRGARAAAAAKPaAAPAAAPKPAAPRVAVqVPTPRARAATGDAPPNGAARAE 617
PRK14951 PRK14951
DNA polymerase III subunits gamma and tau; Provisional
 334-458 7.02e-05

DNA polymerase III subunits gamma and tau; Provisional


Pssm-ID: 237865 [Multi-domain]  Cd Length: 618  Bit Score: 45.86  E-value: 7.02e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 334 PGHAETARDVARAPSPAETTKNLPGAPECADTVKNTVRAPSPAerrkdlvrAPKRAETARDVVRAPSPAERVKDTVGASE 413
Cdd:PRK14951  366 PAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPA--------AAASAPAAPPAAAPPAPVAAPAAAAPAAA 437

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2024348942 414 PMKSASyPTASQPRIAAVKSSKVFSVPVEISEQPAA--AAPVHAGVS 458
Cdd:PRK14951  438 PAAAPA-AVALAPAPPAQAAPETVAIPVRVAPEPAVasAAPAPAAAP 483
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
238-451 2.52e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 44.10  E-value: 2.52e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 238 GVAGAPSCPEMAKDPTGAPEHVGTVKDAVRAPCPAESTEDSQGAPRCAETARDVMGAPSPSEMTKDLLGAPKCTETARDV 317
Cdd:PRK12323  366 GQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPG 445

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 318 VR-------APSPAESTKDPVGTP-GHAETARDVARAPSPAETTKNLPGAPECADTVKNTVRAPSPAERRKDLVRAPKrA 389
Cdd:PRK12323  446 GApapapapAAAPAAAARPAAAGPrPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVA-E 524

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024348942 390 ETARDVVRAPSPAERVKDTVGASEPMKSASYPTASQPRIAAVKSSKVFSVPVEISEQPAAAA 451
Cdd:PRK12323  525 SIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPALAA 586
Myb_DNA-bind_6 pfam13921
Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, ...
 587-631 3.61e-04

Myb-like DNA-binding domain; This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family.


Pssm-ID: 372817 [Multi-domain]  Cd Length: 60  Bit Score: 38.83  E-value: 3.61e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2024348942 587 WTVQESEWIKDGVRKYGeGRWKTISEKYPFqnRTSVQIKDRYRTM 631
Cdd:pfam13921   1 WTEEEDEKLLKLVEKYG-NDWKQIAKELGR--RTPKQCFDRWRRK 42
PRK11907 PRK11907
bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;
253-357 4.24e-04

bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase;


Pssm-ID: 237019 [Multi-domain]  Cd Length: 814  Bit Score: 43.69  E-value: 4.24e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 253 TGAPEHVGTVKDAVRAPcPAESTEDSQGAPrcaetardvmgAPSPSEMTKDLLGAPKCTETArdvVRAPSPAESTKDPVG 332
Cdd:PRK11907   19 TASNPKLAQAEEIVTTT-PATSTEAEQTTP-----------VESDATEEADNTETPVAATTA---AEAPSSSETAETSDP 83

                          90       100
                  ....*....|....*....|....*
gi 2024348942 333 TPGHAETARDVARAPSPAETTKNLP 357
Cdd:PRK11907   84 TSEATDTTTSEARTVTPAATETSKP 108
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
306-451 1.18e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 42.14  E-value: 1.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 306 GAPKCTETARDVVRAPSPAESTKDPVGTPGHAETARDVARAPSPAETTKNLPGAPECADTVKNTVRAPSPaerrkdlVRA 385
Cdd:PRK07003  379 AVPAPGARAAAAVGASAVPAVTAVTGAAGAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAP-------VPA 451

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024348942 386 PKRAETARDVVRAPSPAERVKDTVGASEPMKSASYPTASQPRIAAVKSSKVFSVPVEISEQPAAAA 451
Cdd:PRK07003  452 KANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAAS 517
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
234-430 4.15e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 40.22  E-value: 4.15e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 234 ETAGGVAGAPSCPEMAKDPTGAPehvgtVKDAVRAPCPAESTEDSQGAPRCAETArdvmgAPSPSEmtkdllGAPKCTET 313
Cdd:PRK07003  359 EPAVTGGGAPGGGVPARVAGAVP-----APGARAAAAVGASAVPAVTAVTGAAGA-----ALAPKA------AAAAAATR 422

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 314 ARDVVRAPSPAESTKDPVGTPGHAETARDVARAPSPAETTKNLPGAPECADTVKNTVRAPS--PAERRKDLVRAPKRAET 391
Cdd:PRK07003  423 AEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDapPDAAFEPAPRAAAPSAA 502

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 2024348942 392 ARDVVR---APSPAERVKDTVGASEPMKSASYPTASQPRIAA 430
Cdd:PRK07003  503 TPAAVPdarAPAAASREDAPAAAAPPAPEARPPTPAAAAPAA 544
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
206-460 4.69e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 40.24  E-value: 4.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 206 SPSRTEDQEEAYEPLRRVKHSVGTLRRAETAGGVAGAPSCPEMAKDPTGAPehvgTVKDAVRAPCPAESTEDSQGAPRCA 285
Cdd:PRK12323  373 GPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAP----ARRSPAPEALAAARQASARGPGGAP 448

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 286 ETARDVMGAPSPSEMTKDLLGAPKCTETARDVVRAPSPAESTKDPVGTPGHAETARDVArAPSPAETTKNLPGApECADT 365
Cdd:PRK12323  449 APAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFA-SPAPAQPDAAPAGW-VAESI 526

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 366 VKNTVRAPSPAERRKDLVRAPKRAETARDVVRAPSPAERVKDTVGASEPMKSASYPT--------------ASQPRIAAV 431
Cdd:PRK12323  527 PDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMFDGDWPAlaarlpvrglaqqlARQSELAGV 606

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 2024348942 432 KSSKV-FSVPV------EISEQPAAAAPVHAGVSSR 460
Cdd:PRK12323  607 EGDTVrLRVPVpalaeaEVVERLQAALTEHFGQPVR 642
PRK07003 PRK07003
DNA polymerase III subunit gamma/tau;
194-414 7.18e-03

DNA polymerase III subunit gamma/tau;


Pssm-ID: 235906 [Multi-domain]  Cd Length: 830  Bit Score: 39.45  E-value: 7.18e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 194 AEEPKRSSVTPESPSRTEDQEEAYEPLRRVKHSVGTLRRAETAGGVAGAPSCPEMAKDPTGAPEHVGTVKDAVRAPcPAE 273
Cdd:PRK07003  407 GAALAPKAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPADSGSASAPAS-DAP 485

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942 274 STEDSQGAPRCAETARDVMGAPSPSEmtkDLLGAPKCTETARDVVRAP---SPAESTKDPVGTPGHAETARDV------- 343
Cdd:PRK07003  486 PDAAFEPAPRAAAPSAATPAAVPDAR---APAAASREDAPAAAAPPAPearPPTPAAAAPAARAGGAAAALDVlrnagmr 562

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024348942 344 -----ARAPSPAETTKNLPGAPECADTVKNTVRAPSPaerrkdlvRAPKRAETARDVVRAPSPaeRVKDTVGASEP 414
Cdd:PRK07003  563 vssdrGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTP--------RARAATGDAPPNGAARAE--QAAESRGAPPP 628
PHA03247 PHA03247
large tegument protein UL36; Provisional
 240-460 9.62e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 39.15  E-value: 9.62e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942  240 AGAPSCPEMAKDPTGAPEHVGTVKDAVRAPCPAESTEDSQGA---PR-------CAETARDVMGAPSPSEMTKDLLGAP- 308
Cdd:PHA03247  2486 ARFPFAAGAAPDPGGGGPPDPDAPPAPSRLAPAILPDEPVGEpvhPRmltwirgLEELASDDAGDPPPPLPPAAPPAAPd 2565

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942  309 KCTETARDVVRAPSPAESTKD--------------PVGTPGhaETARDVARAPSPAETTK------------NLPGAPEC 362
Cdd:PHA03247  2566 RSVPPPRPAPRPSEPAVTSRArrpdappqsarpraPVDDRG--DPRGPAPPSPLPPDTHApdppppspspaaNEPDPHPP 2643

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024348942  363 ADTVKNTVRAPSPAERRkdlVRAPKRAETARDVVRAPSPAER-----VKDTVGA-------------SEPMKSASYPTAS 424
Cdd:PHA03247  2644 PTVPPPERPRDDPAPGR---VSRPRRARRLGRAAQASSPPQRprrraARPTVGSltsladpppppptPEPAPHALVSATP 2720

                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 2024348942  425 QPRIAAVKSSKVFSVPVEISEQPAAAAPVHAGVSSR 460
Cdd:PHA03247  2721 LPPGPAAARQASPALPAAPAPPAVPAGPATPGGPAR 2756
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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