|
Name |
Accession |
Description |
Interval |
E-value |
| KISc_KIF1A_KIF1B |
cd01365 |
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A ... |
2-365 |
0e+00 |
|
Kinesin motor domain, KIF1_like proteins; Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Pssm-ID: 276816 [Multi-domain] Cd Length: 361 Bit Score: 557.35 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 2 ASVKVAVRVRPMNRREKDLNAKFIISMEKNKTTITNLKIPEGGTGDTgRERTKTFTYDFSYFSADSKSPSFVCQETVFKN 81
Cdd:cd01365 1 ANVKVAVRVRPFNSREKERNSKCIVQMSGKETTLKNPKQADKNNKAT-REVPKSFSFDYSYWSHDSEDPNYASQEQVYED 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 82 LGTDVLQSAFEGYNACVFAYGQTGSGKSYTMMGNAGDAGLIPRICEGLFSKIsEKTKRNEASFRTEVSYLEIYNERVRDL 161
Cdd:cd01365 80 LGEELLQHAFEGYNVCLFAYGQTGSGKSYTMMGTQEQPGIIPRLCEDLFSRI-ADTTNQNMSYSVEVSYMEIYNEKVRDL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 162 L-RRKSSKTNNLRIREHPKEGPYVEDLSKHLVQNYGDIEELMDAGNINRTTAATGMNDVSSRSHAIFTINFTQAKFDSE- 239
Cdd:cd01365 159 LnPKPKKNKGNLKVREHPVLGPYVEDLSKLAVTSYEDIQDLMDEGNKSRTVAATNMNDTSSRSHAVFTIVLTQKRHDAEt 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 240 -MPCETVSKIHLVDLAGSERADATGATGVRLKEGGNINKSLVTLGNVISALADLSQDAtnplSKKKQVFVPYRDSVLTWL 318
Cdd:cd01365 239 nLTTEKVSKISLVDLAGSERASSTGATGDRLKEGANINKSLTTLGKVISALADMSSGK----SKKKSSFIPYRDSVLTWL 314
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 2024393550 319 LKDSLGGNSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTIN 365
Cdd:cd01365 315 LKENLGGNSKTAMIAAISPADINYEETLSTLRYADRAKKIVNRAVVN 361
|
|
| KISc |
smart00129 |
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play ... |
3-365 |
1.48e-151 |
|
Kinesin motor, catalytic domain. ATPase; Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Pssm-ID: 214526 [Multi-domain] Cd Length: 335 Bit Score: 457.80 E-value: 1.48e-151
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 3 SVKVAVRVRPMNRREKDLNAKFIISMEKNKTTITNLKIPeggtgdTGRERTKTFTYDFSYFSADSkspsfvcQETVFKNL 82
Cdd:smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVGKTLTVRSP------KNRQGEKKFTFDKVFDATAS-------QEDVFEET 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 83 GTDVLQSAFEGYNACVFAYGQTGSGKSYTMMGNAGDAGLIPRICEGLFSKIseKTKRNEASFRTEVSYLEIYNERVRDLL 162
Cdd:smart00129 68 AAPLVDSVLEGYNATIFAYGQTGSGKTYTMIGTPDSPGIIPRALKDLFEKI--DKREEGWQFSVKVSYLEIYNEKIRDLL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 163 rrkSSKTNNLRIREHPKEGPYVEDLSKHLVQNYGDIEELMDAGNINRTTAATGMNDVSSRSHAIFTINFTQAKFDSEMPC 242
Cdd:smart00129 146 ---NPSSKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVEQKIKNSSSGS 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 243 ETVSKIHLVDLAGSERADATGATGVRLKEGGNINKSLVTLGNVISALADLSqdatnplskkKQVFVPYRDSVLTWLLKDS 322
Cdd:smart00129 223 GKASKLNLVDLAGSERAKKTGAEGDRLKEAGNINKSLSALGNVINALAQHS----------KSRHIPYRDSKLTRLLQDS 292
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 2024393550 323 LGGNSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTIN 365
Cdd:smart00129 293 LGGNSKTLMIANVSPSSSNLEETLSTLRFASRAKEIKNKPIVN 335
|
|
| Kinesin |
pfam00225 |
Kinesin motor domain; |
9-358 |
3.51e-150 |
|
Kinesin motor domain;
Pssm-ID: 459720 [Multi-domain] Cd Length: 326 Bit Score: 453.95 E-value: 3.51e-150
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 9 RVRPMNRREKDLNAKFIISMEKNKTTITNLKIpeggtgDTGRERTKTFTYDFSYfsadsksPSFVCQETVFKNLGTDVLQ 88
Cdd:pfam00225 1 RVRPLNEREKERGSSVIVSVESVDSETVESSH------LTNKNRTKTFTFDKVF-------DPEATQEDVYEETAKPLVE 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 89 SAFEGYNACVFAYGQTGSGKSYTMMGNAGDAGLIPRICEGLFSKISEKTKRNEasFRTEVSYLEIYNERVRDLLRRKSSK 168
Cdd:pfam00225 68 SVLEGYNVTIFAYGQTGSGKTYTMEGSDEQPGIIPRALEDLFDRIQKTKERSE--FSVKVSYLEIYNEKIRDLLSPSNKN 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 169 TNNLRIREHPKEGPYVEDLSKHLVQNYGDIEELMDAGNINRTTAATGMNDVSSRSHAIFTINFTQAKFDSEMPCE-TVSK 247
Cdd:pfam00225 146 KRKLRIREDPKKGVYVKGLTEVEVSSAEEVLELLQLGNKNRTVAATKMNEESSRSHAIFTITVEQRNRSTGGEESvKTGK 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 248 IHLVDLAGSERADATG-ATGVRLKEGGNINKSLVTLGNVISALADlsqdatnplskKKQVFVPYRDSVLTWLLKDSLGGN 326
Cdd:pfam00225 226 LNLVDLAGSERASKTGaAGGQRLKEAANINKSLSALGNVISALAD-----------KKSKHIPYRDSKLTRLLQDSLGGN 294
|
330 340 350
....*....|....*....|....*....|..
gi 2024393550 327 SKTIMIATISPADVNYGETLSTLRYANRAKNI 358
Cdd:pfam00225 295 SKTLMIANISPSSSNYEETLSTLRFASRAKNI 326
|
|
| KISc |
cd00106 |
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity ... |
3-356 |
1.30e-137 |
|
Kinesin motor domain; Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276812 [Multi-domain] Cd Length: 326 Bit Score: 420.89 E-value: 1.30e-137
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 3 SVKVAVRVRPMNRREKDLNAKFIISMEKNKTTITNLKIPEGGTgdtgrertKTFTYDFSyFSADSKspsfvcQETVFKNL 82
Cdd:cd00106 1 NVRVAVRVRPLNGREARSAKSVISVDGGKSVVLDPPKNRVAPP--------KTFAFDAV-FDSTST------QEEVYEGT 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 83 GTDVLQSAFEGYNACVFAYGQTGSGKSYTMMG-NAGDAGLIPRICEGLFSKISEKTKRNeASFRTEVSYLEIYNERVRDL 161
Cdd:cd00106 66 AKPLVDSALEGYNGTIFAYGQTGSGKTYTMLGpDPEQRGIIPRALEDIFERIDKRKETK-SSFSVSASYLEIYNEKIYDL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 162 LRrkSSKTNNLRIREHPKEGPYVEDLSKHLVQNYGDIEELMDAGNINRTTAATGMNDVSSRSHAIFTINFTQAKFDSEMP 241
Cdd:cd00106 145 LS--PVPKKPLSLREDPKRGVYVKGLTEVEVGSLEDALELLDAGNKNRTTASTNMNEHSSRSHAVFTIHVKQRNREKSGE 222
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 242 CETVSKIHLVDLAGSERADATGATGVRLKEGGNINKSLVTLGNVISALADlsqdatnplskKKQVFVPYRDSVLTWLLKD 321
Cdd:cd00106 223 SVTSSKLNLVDLAGSERAKKTGAEGDRLKEGGNINKSLSALGKVISALAD-----------GQNKHIPYRDSKLTRLLQD 291
|
330 340 350
....*....|....*....|....*....|....*
gi 2024393550 322 SLGGNSKTIMIATISPADVNYGETLSTLRYANRAK 356
Cdd:cd00106 292 SLGGNSKTIMIACISPSSENFEETLSTLRFASRAK 326
|
|
| KISc_KIF3 |
cd01371 |
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or ... |
3-358 |
9.39e-120 |
|
Kinesin motor domain, kinesins II or KIF3_like proteins; Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276822 [Multi-domain] Cd Length: 334 Bit Score: 374.10 E-value: 9.39e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 3 SVKVAVRVRPMNRREKDLNAKFIISMEKNKTTITnLKIPEGGTGdtgrERTKTFTYDFSYfsadsksPSFVCQETVFKNL 82
Cdd:cd01371 2 NVKVVVRCRPLNGKEKAAGALQIVDVDEKRGQVS-VRNPKATAN----EPPKTFTFDAVF-------DPNSKQLDVYDET 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 83 GTDVLQSAFEGYNACVFAYGQTGSGKSYTMMGNAGDA---GLIPRICEGLFSKISEKtkRNEASFRTEVSYLEIYNERVR 159
Cdd:cd01371 70 ARPLVDSVLEGYNGTIFAYGQTGTGKTYTMEGKREDPelrGIIPNSFAHIFGHIARS--QNNQQFLVRVSYLEIYNEEIR 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 160 DLLRRKSSKtnNLRIREHPKEGPYVEDLSKHLVQNYGDIEELMDAGNINRTTAATGMNDVSSRSHAIFTINFTQAKF--D 237
Cdd:cd01371 148 DLLGKDQTK--RLELKERPDTGVYVKDLSMFVVKNADEMEHVMNLGNKNRSVGATNMNEDSSRSHAIFTITIECSEKgeD 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 238 SEMPCeTVSKIHLVDLAGSERADATGATGVRLKEGGNINKSLVTLGNVISALADlsqdatnplskKKQVFVPYRDSVLTW 317
Cdd:cd01371 226 GENHI-RVGKLNLVDLAGSERQSKTGATGERLKEATKINLSLSALGNVISALVD-----------GKSTHIPYRDSKLTR 293
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 2024393550 318 LLKDSLGGNSKTIMIATISPADVNYGETLSTLRYANRAKNI 358
Cdd:cd01371 294 LLQDSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 334
|
|
| KISc_KIF4 |
cd01372 |
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members ... |
3-358 |
7.44e-117 |
|
Kinesin motor domain, KIF4-like subfamily; Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276823 [Multi-domain] Cd Length: 341 Bit Score: 366.66 E-value: 7.44e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 3 SVKVAVRVRPMNRREKDLNAKFIISMEKNKTTITnlkipeggtgdtgRERTKTFTYDFSYFSADSkspsfvcQETVFKNL 82
Cdd:cd01372 2 SVRVAVRVRPLLPKEIIEGCRICVSFVPGEPQVT-------------VGTDKSFTFDYVFDPSTE-------QEEVYNTC 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 83 GTDVLQSAFEGYNACVFAYGQTGSGKSYTMMGNAGDA------GLIPRICEGLFSKISEKTKRNEasFRTEVSYLEIYNE 156
Cdd:cd01372 62 VAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAYTAEedeeqvGIIPRAIQHIFKKIEKKKDTFE--FQLKVSFLEIYNE 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 157 RVRDLLRRKSSKTNNLRIREHPKEGPYVEDLSKHLVQNYGDIEELMDAGNINRTTAATGMNDVSSRSHAIFTINFTQAKF 236
Cdd:cd01372 140 EIRDLLDPETDKKPTISIREDSKGGITIVGLTEVTVLSAEDMMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTKK 219
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 237 DSEMPC--------ETVSKIHLVDLAGSERADATGATGVRLKEGGNINKSLVTLGNVISALADlsqdatnplSKKKQVFV 308
Cdd:cd01372 220 NGPIAPmsaddknsTFTSKFHFVDLAGSERLKRTGATGDRLKEGISINSGLLALGNVISALGD---------ESKKGAHV 290
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 2024393550 309 PYRDSVLTWLLKDSLGGNSKTIMIATISPADVNYGETLSTLRYANRAKNI 358
Cdd:cd01372 291 PYRDSKLTRLLQDSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNI 340
|
|
| KISc_KIP3_like |
cd01370 |
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast ... |
3-358 |
5.65e-105 |
|
Kinesin motor domain, KIP3-like subgroup; Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276821 [Multi-domain] Cd Length: 345 Bit Score: 334.70 E-value: 5.65e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 3 SVKVAVRVRPMNRREKDLNAKFIISMEKNKTTI-------TNLKIPEGGTGDTGRERTKTFTYDFSY-FSADSkspsfvC 74
Cdd:cd01370 1 SLTVAVRVRPFSEKEKNEGFRRIVKVMDNHMLVfdpkdeeDGFFHGGSNNRDRRKRRNKELKYVFDRvFDETS------T 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 75 QETVFKNLGTDVLQSAFEGYNACVFAYGQTGSGKSYTMMGNAGDAGLIPRICEGLFSKIseKTKRNEASFRTEVSYLEIY 154
Cdd:cd01370 75 QEEVYEETTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTPQEPGLMVLTMKELFKRI--ESLKDEKEFEVSMSYLEIY 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 155 NERVRDLLRrKSSKTnnLRIREHPKEGPYVEDLSKHLVQNYGDIEELMDAGNINRTTAATGMNDVSSRSHAIFTINFTQ- 233
Cdd:cd01370 153 NETIRDLLN-PSSGP--LELREDAQNGIVVAGLTEHSPKSAEEILELLMKGNRNRTQEPTDANATSSRSHAVLQITVRQq 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 234 AKFDSEMPCETVSKIHLVDLAGSERADATGATGVRLKEGGNINKSLVTLGNVISALADlsqdatnplSKKKQVFVPYRDS 313
Cdd:cd01370 230 DKTASINQQVRQGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALAD---------PGKKNKHIPYRDS 300
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 2024393550 314 VLTWLLKDSLGGNSKTIMIATISPADVNYGETLSTLRYANRAKNI 358
Cdd:cd01370 301 KLTRLLKDSLGGNCRTVMIANISPSSSSYEETHNTLKYANRAKNI 345
|
|
| KISc_CENP_E |
cd01374 |
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like ... |
3-358 |
1.27e-100 |
|
Kinesin motor domain, CENP-E/KIP2-like subgroup; Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276825 [Multi-domain] Cd Length: 321 Bit Score: 322.36 E-value: 1.27e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 3 SVKVAVRVRPMNRREKDLNAKFIISMEKNktTITNLKIPEGgtgdtgrertkTFTYDFSYfsaDSKSPSfvcqETVFKNL 82
Cdd:cd01374 1 KITVTVRVRPLNSREIGINEQVAWEIDND--TIYLVEPPST-----------SFTFDHVF---GGDSTN----REVYELI 60
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 83 GTDVLQSAFEGYNACVFAYGQTGSGKSYTMMGNAGDAGLIPRICEGLFSKISEKTKRNeasFRTEVSYLEIYNERVRDLL 162
Cdd:cd01374 61 AKPVVKSALEGYNGTIFAYGQTSSGKTFTMSGDEDEPGIIPLAIRDIFSKIQDTPDRE---FLLRVSYLEIYNEKINDLL 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 163 rrkSSKTNNLRIREHPKEGPYVEDLSKHLVQNYGDIEELMDAGNINRTTAATGMNDVSSRSHAIFTIN-FTQAKFDSEMP 241
Cdd:cd01374 138 ---SPTSQNLKIRDDVEKGVYVAGLTEEIVSSPEHALSLIARGEKNRHVGETDMNERSSRSHTIFRITiESSERGELEEG 214
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 242 CETVSKIHLVDLAGSERADATGATGVRLKEGGNINKSLVTLGNVISALADlsqdatnplsKKKQVFVPYRDSVLTWLLKD 321
Cdd:cd01374 215 TVRVSTLNLIDLAGSERAAQTGAAGVRRKEGSHINKSLLTLGTVISKLSE----------GKVGGHIPYRDSKLTRILQP 284
|
330 340 350
....*....|....*....|....*....|....*..
gi 2024393550 322 SLGGNSKTIMIATISPADVNYGETLSTLRYANRAKNI 358
Cdd:cd01374 285 SLGGNSRTAIICTITPAESHVEETLNTLKFASRAKKI 321
|
|
| KISc_C_terminal |
cd01366 |
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, ... |
9-360 |
1.98e-100 |
|
Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins; Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276817 [Multi-domain] Cd Length: 329 Bit Score: 321.85 E-value: 1.98e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 9 RVRPMNRREKDLNAKFIISMEKNKTTITNLKipeggtgdtGRERTKTFTYDFSYFSADSkspsfvcQETVFKNLGTDVlQ 88
Cdd:cd01366 9 RVRPLLPSEENEDTSHITFPDEDGQTIELTS---------IGAKQKEFSFDKVFDPEAS-------QEDVFEEVSPLV-Q 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 89 SAFEGYNACVFAYGQTGSGKSYTMMGNAGDAGLIPRICEGLFSKISEKTKRNeASFRTEVSYLEIYNERVRDLLRRKSSK 168
Cdd:cd01366 72 SALDGYNVCIFAYGQTGSGKTYTMEGPPESPGIIPRALQELFNTIKELKEKG-WSYTIKASMLEIYNETIRDLLAPGNAP 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 169 TNNLRIREHPKEGP-YVEDLSKHLVQNYGDIEELMDAGNINRTTAATGMNDVSSRSHAIFTINF------TQAKfdsemp 241
Cdd:cd01366 151 QKKLEIRHDSEKGDtTVTNLTEVKVSSPEEVRQLLKKASKNRSTASTAMNEHSSRSHSVFILHIsgrnlqTGEI------ 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 242 ceTVSKIHLVDLAGSERADATGATGVRLKEGGNINKSLVTLGNVISALAdlsqdatnplskKKQVFVPYRDSVLTWLLKD 321
Cdd:cd01366 225 --SVGKLNLVDLAGSERLNKSGATGDRLKETQAINKSLSALGDVISALR------------QKQSHIPYRNSKLTYLLQD 290
|
330 340 350
....*....|....*....|....*....|....*....
gi 2024393550 322 SLGGNSKTIMIATISPADVNYGETLSTLRYANRAKNIIN 360
Cdd:cd01366 291 SLGGNSKTLMFVNISPAESNLNETLNSLRFASKVNSCEL 329
|
|
| KISc_KLP2_like |
cd01373 |
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members ... |
4-367 |
1.87e-99 |
|
Kinesin motor domain, KIF15-like subgroup; Kinesin motor domain, KIF15-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276824 [Multi-domain] Cd Length: 347 Bit Score: 320.22 E-value: 1.87e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 4 VKVAVRVRPMNRREKDLNAKFIISMEKNKTTITNLKIPeggtgdtgrertKTFTYDfSYFSADSKspsfvcQETVFKNLG 83
Cdd:cd01373 3 VKVFVRIRPPAEREGDGEYGQCLKKLSSDTLVLHSKPP------------KTFTFD-HVADSNTN------QESVFQSVG 63
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 84 TDVLQSAFEGYNACVFAYGQTGSGKSYTMMGNAGDA--------GLIPRICEGLFSKIS-EKTKRNEA-SFRTEVSYLEI 153
Cdd:cd01373 64 KPIVESCLSGYNGTIFAYGQTGSGKTYTMWGPSESDnesphglrGVIPRIFEYLFSLIQrEKEKAGEGkSFLCKCSFLEI 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 154 YNERVRDLLRRKSSktnNLRIREHPKEGPYVEDLSKHLVQNYGDIEELMDAGNINRTTAATGMNDVSSRSHAIFTINFTQ 233
Cdd:cd01373 144 YNEQIYDLLDPASR---NLKLREDIKKGVYVENLVEEYVTSAEDVYQVLSKGWSNRKVAATSMNRESSRSHAVFTCTIES 220
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 234 AKFDSEMPCETVSKIHLVDLAGSERADATGATGVRLKEGGNINKSLVTLGNVISALADLSQDatnplskkKQVFVPYRDS 313
Cdd:cd01373 221 WEKKACFVNIRTSRLNLVDLAGSERQKDTHAEGVRLKEAGNINKSLSCLGHVINALVDVAHG--------KQRHVCYRDS 292
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....
gi 2024393550 314 VLTWLLKDSLGGNSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTINED 367
Cdd:cd01373 293 KLTFLLRDSLGGNAKTAIIANVHPSSKCFGETLSTLRFAQRAKLIKNKAVVNED 346
|
|
| KISc_KHC_KIF5 |
cd01369 |
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, ... |
1-358 |
8.11e-98 |
|
Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup; Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276820 [Multi-domain] Cd Length: 325 Bit Score: 314.65 E-value: 8.11e-98
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 1 MASVKVAVRVRPMNRREKDLNAKFIISMEKNKTTITNlkipeggtgdtGRERTKTFTYDfSYFSADSKspsfvcQETVFK 80
Cdd:cd01369 1 ECNIKVVCRFRPLNELEVLQGSKSIVKFDPEDTVVIA-----------TSETGKTFSFD-RVFDPNTT------QEDVYN 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 81 NLGTDVLQSAFEGYNACVFAYGQTGSGKSYTMMGNAGDA---GLIPRICEGLFSKISEKTKrnEASFRTEVSYLEIYNER 157
Cdd:cd01369 63 FAAKPIVDDVLNGYNGTIFAYGQTSSGKTYTMEGKLGDPesmGIIPRIVQDIFETIYSMDE--NLEFHVKVSYFEIYMEK 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 158 VRDLLrrKSSKTNnLRIREHPKEGPYVEDLSKHLVQNYGDIEELMDAGNINRTTAATGMNDVSSRSHAIFTINFTQAkfD 237
Cdd:cd01369 141 IRDLL--DVSKTN-LSVHEDKNRGPYVKGATERFVSSPEEVLDVIDEGKSNRHVAVTNMNEESSRSHSIFLINVKQE--N 215
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 238 SEMPCETVSKIHLVDLAGSERADATGATGVRLKEGGNINKSLVTLGNVISALADlsqdatnplskKKQVFVPYRDSVLTW 317
Cdd:cd01369 216 VETEKKKSGKLYLVDLAGSEKVSKTGAEGAVLDEAKKINKSLSALGNVINALTD-----------GKKTHIPYRDSKLTR 284
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 2024393550 318 LLKDSLGGNSKTIMIATISPADVNYGETLSTLRYANRAKNI 358
Cdd:cd01369 285 ILQDSLGGNSRTTLIICCSPSSYNESETLSTLRFGQRAKTI 325
|
|
| KISc_BimC_Eg5 |
cd01364 |
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle ... |
1-367 |
5.18e-91 |
|
Kinesin motor domain, BimC/Eg5 spindle pole proteins; Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276815 [Multi-domain] Cd Length: 353 Bit Score: 297.31 E-value: 5.18e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 1 MASVKVAVRVRPMNRREKDLNAKFIISMEKNKTTITnlkipEGGTGDTGRERTKTFTYDFSyFSADSKspsfvcQETVFK 80
Cdd:cd01364 1 GKNIQVVVRCRPFNLRERKASSHSVVEVDPVRKEVS-----VRTGGLADKSSTKTYTFDMV-FGPEAK------QIDVYR 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 81 NLGTDVLQSAFEGYNACVFAYGQTGSGKSYTMMGNAG-----------DAGLIPRICEGLFSKISektkRNEASFRTEVS 149
Cdd:cd01364 69 SVVCPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRSpneeytweldpLAGIIPRTLHQLFEKLE----DNGTEYSVKVS 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 150 YLEIYNERVRDLLRRKSSKTNNLRIREHP--KEGPYVEDLSKHLVQNYGDIEELMDAGNINRTTAATGMNDVSSRSHAIF 227
Cdd:cd01364 145 YLEIYNEELFDLLSPSSDVSERLRMFDDPrnKRGVIIKGLEEITVHNKDEVYQILEKGAAKRKTAATLMNAQSSRSHSVF 224
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 228 TINFTQAKFDSEMpcETV---SKIHLVDLAGSERADATGATGVRLKEGGNINKSLVTLGNVISALADlsqdatnplskkK 304
Cdd:cd01364 225 SITIHIKETTIDG--EELvkiGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVE------------R 290
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024393550 305 QVFVPYRDSVLTWLLKDSLGGNSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTINED 367
Cdd:cd01364 291 APHVPYRESKLTRLLQDSLGGRTKTSIIATISPASVNLEETLSTLEYAHRAKNIKNKPEVNQK 353
|
|
| KIP1 |
COG5059 |
Kinesin-like protein [Cytoskeleton]; |
75-441 |
3.88e-81 |
|
Kinesin-like protein [Cytoskeleton];
Pssm-ID: 227392 [Multi-domain] Cd Length: 568 Bit Score: 277.39 E-value: 3.88e-81
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 75 QETVFKNLGTDVLQSAFEGYNACVFAYGQTGSGKSYTMMGNAGDAGLIPRICEGLFSKISEKtkRNEASFRTEVSYLEIY 154
Cdd:COG5059 70 QEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDL--SMTKDFAVSISYLEIY 147
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 155 NERVRDLLrrkSSKTNNLRIREHPKEGPYVEDLSKHLVQNYGDIEELMDAGNINRTTAATGMNDVSSRSHAIFTInfTQA 234
Cdd:COG5059 148 NEKIYDLL---SPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQI--ELA 222
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 235 KFDSEMPCETVSKIHLVDLAGSERADATGATGVRLKEGGNINKSLVTLGNVISALADlsqdatnplsKKKQVFVPYRDSV 314
Cdd:COG5059 223 SKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGD----------KKKSGHIPYRESK 292
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 315 LTWLLKDSLGGNSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTINEDPNVKL--------IRELRAEIARLKAL 386
Cdd:COG5059 293 LTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSReieeikfdLSEDRSEIEILVFR 372
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 2024393550 387 LAQGNQIALLDSPTA--LSMEEKLQQNEARVQELTKEWTNKWNETQNILKEQTLALR 441
Cdd:COG5059 373 EQSQLSQSSLSGIFAymQSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEGWKYK 429
|
|
| FHA_KIF16B |
cd22732 |
forkhead associated (FHA) domain found in kinesin-like protein KIF16B; KIF16B, also called ... |
446-562 |
4.66e-80 |
|
forkhead associated (FHA) domain found in kinesin-like protein KIF16B; KIF16B, also called sorting nexin-23, is a plus end-directed microtubule-dependent motor protein involved in endosome transport and receptor recycling and degradation. It regulates the plus end motility of early endosomes and the balance between recycling and degradation of receptors such as EGF receptor (EGFR) and FGF receptor (FGFR). It regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.
Pssm-ID: 438784 [Multi-domain] Cd Length: 117 Bit Score: 257.56 E-value: 4.66e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 446 GVVLDSELPHLIGIDDDLLSTGIILYHLKEGQTYVGREDAMTEQDIVLHGLDLESEHCIFENLNGTVNLIPLNGAQCSVN 525
Cdd:cd22732 1 GVVLDSELPHLIGIDDDLLSTGIILYHLKEGRTYVGRDDATTEQDIVLHGLDLESEHCIFENLNGTVTLIPLNGAQCSVN 80
|
90 100 110
....*....|....*....|....*....|....*..
gi 2024393550 526 GIQITEATHLNQGAVILLGRTNMFRFNHPKEAAKLRE 562
Cdd:cd22732 81 GVQITEATQLNQGAVILLGRTNMFRFNHPKEAAKLRE 117
|
|
| PLN03188 |
PLN03188 |
kinesin-12 family protein; Provisional |
4-385 |
5.79e-72 |
|
kinesin-12 family protein; Provisional
Pssm-ID: 215621 [Multi-domain] Cd Length: 1320 Bit Score: 263.72 E-value: 5.79e-72
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 4 VKVAVRVRPMNRREKDlnAKFIISMEKNKTTITNlkipeggtgdtgrertKTFTYDfsyfsadSKSPSFVCQETVFKNLG 83
Cdd:PLN03188 100 VKVIVRMKPLNKGEEG--EMIVQKMSNDSLTING----------------QTFTFD-------SIADPESTQEDIFQLVG 154
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 84 TDVLQSAFEGYNACVFAYGQTGSGKSYTMMGNA---------GDA-GLIPRICEGLFSKISE---KTKRNEASFRTEVSY 150
Cdd:PLN03188 155 APLVENCLAGFNSSVFAYGQTGSGKTYTMWGPAnglleehlsGDQqGLTPRVFERLFARINEeqiKHADRQLKYQCRCSF 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 151 LEIYNERVRDLLrrkSSKTNNLRIREHPKEGPYVEDLSKHLVQNYGDIEELMDAGNINRTTAATGMNDVSSRSHAIFTIN 230
Cdd:PLN03188 235 LEIYNEQITDLL---DPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCV 311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 231 FtqakfdsEMPCETV---------SKIHLVDLAGSERADATGATGVRLKEGGNINKSLVTLGNVISALADLSQDAtnpls 301
Cdd:PLN03188 312 V-------ESRCKSVadglssfktSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTG----- 379
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 302 kkKQVFVPYRDSVLTWLLKDSLGGNSKTIMIATISPADVNYGETLSTLRYANRAKNIINKPTINE----DPNV--KLIRE 375
Cdd:PLN03188 380 --KQRHIPYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEvmqdDVNFlrEVIRQ 457
|
410
....*....|
gi 2024393550 376 LRAEIARLKA 385
Cdd:PLN03188 458 LRDELQRVKA 467
|
|
| KISc_KIF9_like |
cd01375 |
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play ... |
3-356 |
8.14e-70 |
|
Kinesin motor domain, KIF9-like subgroup; Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276826 [Multi-domain] Cd Length: 334 Bit Score: 237.48 E-value: 8.14e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 3 SVKVAVRVRPMNRREKDlnakfIISMEKNKTTITNLKIPEGGTGDTGRERTKtFTYDFSYFSADSKspsfvcQETVFKNL 82
Cdd:cd01375 1 KVQAFVRVRPTDDFAHE-----MIKYGEDGKSISIHLKKDLRRGVVNNQQED-WSFKFDGVLHNAS------QELVYETV 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 83 GTDVLQSAFEGYNACVFAYGQTGSGKSYTMMG---NAGDAGLIPRICEGLFSKISEktkRNEASFRTEVSYLEIYNERVR 159
Cdd:cd01375 69 AKDVVSSALAGYNGTIFAYGQTGAGKTFTMTGgteNYKHRGIIPRALQQVFRMIEE---RPTKAYTVHVSYLEIYNEQLY 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 160 DLLR---RKSSKTNNLRIREHPKEGPYVEDLSKHLVQNYGDIEELMDAGNINRTTAATGMNDVSSRSHAIFTINFTQAKF 236
Cdd:cd01375 146 DLLStlpYVGPSVTPMTILEDSPQNIFIKGLSLHLTSQEEEALSLLFLGETNRIIASHTMNKNSSRSHCIFTIHLEAHSR 225
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 237 DSEMPCETVSKIHLVDLAGSERADATGATGVRLKEGGNINKSLVTLGNVISALADlsqdatnplskKKQVFVPYRDSVLT 316
Cdd:cd01375 226 TLSSEKYITSKLNLVDLAGSERLSKTGVEGQVLKEATYINKSLSFLEQAIIALSD-----------KDRTHVPFRQSKLT 294
|
330 340 350 360
....*....|....*....|....*....|....*....|
gi 2024393550 317 WLLKDSLGGNSKTIMIATISPADVNYGETLSTLRYANRAK 356
Cdd:cd01375 295 HVLRDSLGGNCNTVMVANIYGEAAQLEETLSTLRFASRVK 334
|
|
| KISc_KIF2_like |
cd01367 |
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a ... |
4-356 |
6.37e-69 |
|
Kinesin motor domain, KIF2-like group; Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276818 [Multi-domain] Cd Length: 328 Bit Score: 234.50 E-value: 6.37e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 4 VKVAVRVRPMNRREKDLNAKFIISMEKNKTTITNLkipeggtgdtgrERTK----------TFTYDFSyFSADSKSpsfv 73
Cdd:cd01367 2 IKVCVRKRPLNKKEVAKKEIDVVSVPSKLTLIVHE------------PKLKvdltkyienhTFRFDYV-FDESSSN---- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 74 cqETVFKNLGTDVLQSAFEGYNACVFAYGQTGSGKSYTMMGNAGDAGLIPRICEG----LFSKISEKTKRNEasFRTEVS 149
Cdd:cd01367 65 --ETVYRSTVKPLVPHIFEGGKATCFAYGQTGSGKTYTMGGDFSGQEESKGIYALaardVFRLLNKLPYKDN--LGVTVS 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 150 YLEIYNERVRDLLRRKSSktnnLRIREHPKEGPYVEDLSKHLVQNYGDIEELMDAGNINRTTAATGMNDVSSRSHAIFTI 229
Cdd:cd01367 141 FFEIYGGKVFDLLNRKKR----VRLREDGKGEVQVVGLTEKPVTSAEELLELIESGSSLRTTGQTSANSQSSRSHAILQI 216
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 230 NFTQAKFDsempcETVSKIHLVDLAGSER-ADATGATGVRLKEGGNINKSLVTLGNVISALAdlsqdatnplskKKQVFV 308
Cdd:cd01367 217 ILRDRGTN-----KLHGKLSFVDLAGSERgADTSSADRQTRMEGAEINKSLLALKECIRALG------------QNKAHI 279
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 2024393550 309 PYRDSVLTWLLKDSL-GGNSKTIMIATISPADVNYGETLSTLRYANRAK 356
Cdd:cd01367 280 PFRGSKLTQVLKDSFiGENSKTCMIATISPGASSCEHTLNTLRYADRVK 328
|
|
| KISc_KIF23_like |
cd01368 |
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members ... |
4-356 |
4.36e-68 |
|
Kinesin motor domain, KIF23-like subgroup; Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276819 [Multi-domain] Cd Length: 345 Bit Score: 233.05 E-value: 4.36e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 4 VKVAVRVRPMNRREKDLNAKFIISMEkNKTTITnLKIPEGgtgDTGRERTKTFTYDFSYFSADSKSPSFVCQETVFKNLG 83
Cdd:cd01368 3 VKVYLRVRPLSKDELESEDEGCIEVI-NSTTVV-LHPPKG---SAANKSERNGGQKETKFSFSKVFGPNTTQKEFFQGTA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 84 TDVLQSAFEGYNACVFAYGQTGSGKSYTMMGNAGDAGLIPRICEGLFSKISEktkrneasFRTEVSYLEIYNERVRDLLR 163
Cdd:cd01368 78 LPLVQDLLHGKNGLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG--------YSVFVSYIEIYNEYIYDLLE 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 164 RKSS----KTNNLRIREHPKEGPYVEDLSKHLVQNYGDIEELMDAGNINRTTAATGMNDVSSRSHAIFTINFTQAKFDSE 239
Cdd:cd01368 150 PSPSsptkKRQSLRLREDHNGNMYVAGLTEIEVKSTEEARKVLKRGQKNRSVAGTKLNRESSRSHSVFTIKLVQAPGDSD 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 240 MPCE------TVSKIHLVDLAGSERADATGATGVRLKEGGNINKSLVTLGNVISALADlsqdatNPLSKKKQVfVPYRDS 313
Cdd:cd01368 230 GDVDqdkdqiTVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGTCIEVLRE------NQLQGTNKM-VPFRDS 302
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 2024393550 314 VLTWLLKDSLGGNSKTIMIATISPADVNYGETLSTLRYANRAK 356
Cdd:cd01368 303 KLTHLFQNYFDGEGKASMIVNVNPCASDYDETLHVMKFSAIAQ 345
|
|
| KISc_KID_like |
cd01376 |
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. ... |
4-356 |
2.10e-67 |
|
Kinesin motor domain, KIF22/Kid-like subgroup; Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward.
Pssm-ID: 276827 [Multi-domain] Cd Length: 319 Bit Score: 230.08 E-value: 2.10e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 4 VKVAVRVRPMNRREKDLNAKFIIS-MEKNKTTITNlkipeggtgdtGRERTKTFTYDFSYFSADSKSpsfvcQETVFKNL 82
Cdd:cd01376 2 VRVAVRVRPFVDGTAGASDPSCVSgIDSCSVELAD-----------PRNHGETLKYQFDAFYGEEST-----QEDIYARE 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 83 GTDVLQSAFEGYNACVFAYGQTGSGKSYTMMGNAGDAGLIPRICEGLFSkISEKTKRneaSFRTEVSYLEIYNERVRDLL 162
Cdd:cd01376 66 VQPIVPHLLEGQNATVFAYGSTGAGKTFTMLGSPEQPGLMPLTVMDLLQ-MTRKEAW---ALSFTMSYLEIYQEKILDLL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 163 rrkSSKTNNLRIREHPKEGPYVEDLSKHLVQNYGDIEELMDAGNINRTTAATGMNDVSSRSHAIFTINFTQAKFDSEMPC 242
Cdd:cd01376 142 ---EPASKELVIREDKDGNILIPGLSSKPIKSMAEFEEAFLPASKNRTVAATRLNDNSSRSHAVLLIKVDQRERLAPFRQ 218
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 243 ETvSKIHLVDLAGSERADATGATGVRLKEGGNINKSLVTLGNVISALadlsqdatnplsKKKQVFVPYRDSVLTWLLKDS 322
Cdd:cd01376 219 RT-GKLNLIDLAGSEDNRRTGNEGIRLKESGAINSSLFVLSKVVNAL------------NKNLPRIPYRDSKLTRLLQDS 285
|
330 340 350
....*....|....*....|....*....|....
gi 2024393550 323 LGGNSKTIMIATISPADVNYGETLSTLRYANRAK 356
Cdd:cd01376 286 LGGGSRCIMVANIAPERTFYQDTLSTLNFAARSR 319
|
|
| FHA_KIF16 |
cd22708 |
forkhead associated (FHA) domain found in the kinesin-like protein KIF16 family; The KIF16 ... |
446-554 |
8.40e-65 |
|
forkhead associated (FHA) domain found in the kinesin-like protein KIF16 family; The KIF16 family includes StARD9/KIF16A and KIF16B. StARD9, also called START domain-containing protein 9, or kinesin-like protein KIF16A, is a microtubule-dependent motor protein required for spindle pole assembly during mitosis. It is required to stabilize the pericentriolar material (PCM). KIF16B, also called sorting nexin-23, is a plus end-directed microtubule-dependent motor protein involved in endosome transport and receptor recycling and degradation. It regulates the plus end motility of early endosomes and the balance between recycling and degradation of receptors such as EGF receptor (EGFR) and FGF receptor (FGFR). It regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.
Pssm-ID: 438760 [Multi-domain] Cd Length: 109 Bit Score: 214.44 E-value: 8.40e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 446 GVVLDSELPHLIGIDDDLLSTGIILYHLKEGQTYVGREDAMTEQDIVLHGLDLESEHCIFENLNGTVNLIPLNGAQCSVN 525
Cdd:cd22708 1 GVVLDSELPHLIGIDDDLLSTGVVLYHLKEGKTRIGREDAPQEQDIVLDGEDIEAEHCIIENVGGVVTLHPLPGALCAVN 80
|
90 100
....*....|....*....|....*....
gi 2024393550 526 GIQITEATHLNQGAVILLGRTNMFRFNHP 554
Cdd:cd22708 81 GQVITQPTRLTQGDVILLGKTNMFRFNHP 109
|
|
| FHA_KIF16A_STARD9 |
cd22731 |
forkhead associated (FHA) domain found in StAR-related lipid transfer protein 9 (StARD9); ... |
446-564 |
1.23e-49 |
|
forkhead associated (FHA) domain found in StAR-related lipid transfer protein 9 (StARD9); StARD9, also called START domain-containing protein 9, or kinesin-like protein KIF16A, is a microtubule-dependent motor protein required for spindle pole assembly during mitosis. It is required to stabilize the pericentriolar material (PCM). The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.
Pssm-ID: 438783 [Multi-domain] Cd Length: 119 Bit Score: 171.50 E-value: 1.23e-49
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 446 GVVLDSELPHLIGIDDDLLSTGIILYHLKEGQTYVGREDAMTEQDIVLHGLDLESEHCIFENLNGTVNLIPLNGAQCSVN 525
Cdd:cd22731 1 GVTIDSNLPHLIAMDDDILSTGVVLYHLREGTTKIGRSDSEQEQDIVLQGPWIERDHCMIHNECGVVTLRPAQGAQCTVN 80
|
90 100 110
....*....|....*....|....*....|....*....
gi 2024393550 526 GIQITEATHLNQGAVILLGRTNMFRFNHPKEAAKLREKR 564
Cdd:cd22731 81 GREVTESCRLSQGAVIVLGKTHKFRFNHPAEAAILRQRR 119
|
|
| FHA_PHLB1 |
cd22713 |
forkhead associated (FHA) domain found in pleckstrin homology-like domain family B member 1 ... |
438-561 |
5.02e-34 |
|
forkhead associated (FHA) domain found in pleckstrin homology-like domain family B member 1 (PHLDB1) and similar proteins; PHLDB1, also called protein LL5-alpha (LL5A), acts as an insulin-responsive protein that enhances Akt activation. PHLDB1 contains a pleckstrin homology domain, which binds phosphatidylinositol PI(3,4)P(2), PI(3,5)P(2), and PI(3,4,5)P(3), as well as a Forkhead-associated (FHA) domain and coiled coil regions. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.
Pssm-ID: 438765 Cd Length: 120 Bit Score: 126.67 E-value: 5.02e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 438 LALRKEGIGVVLDSELPHLIGIDDDLLSTGIILYHLKEGQTYVGREDAMTeqdIVLHGLDLESEHCIFENLNGTVNLIPL 517
Cdd:cd22713 1 LELTETGKALKVQTEKPHLVSLGSGRLSTAVTLLPLPEGKTTIGTAASDI---ISLQGPGVEPEHCYIENINGTVTLYPC 77
|
90 100 110 120
....*....|....*....|....*....|....*....|....
gi 2024393550 518 nGAQCSVNGIQITEATHLNQGAVILLGRTNMFRFNHPKEAAKLR 561
Cdd:cd22713 78 -GNLCSVDGLPITEPTRLTQGCMICLGRSNYFRFNHPAEAKRMK 120
|
|
| FHA_KIF1 |
cd22705 |
forkhead associated (FHA) domain found in the kinesin-like protein KIF1 family; The KIF1 ... |
453-553 |
2.49e-31 |
|
forkhead associated (FHA) domain found in the kinesin-like protein KIF1 family; The KIF1 family includes KIF1A, KIF1B, and KIF1C. KIF1A, also called axonal transporter of synaptic vesicles (ATSV), microtubule-based motor KIF1A, Unc-104- and KIF1A-related protein, or Unc-104, is an axonal transporter of synaptic vesicles, which is mutated in hereditary sensory and autonomic neuropathy type 2. It is also required for neuronal dense core vesicle (DCV) transport to dendritic spines and axons. The calcium-dependent interaction with CALM1 increases vesicle motility, and interaction with the scaffolding proteins PPFIA2 and TANC2 recruits DCVs to synaptic sites. KIF1B, also called Klp, is a motor for anterograde transport of mitochondria. It has a microtubule plus end-directed motility. Isoform 1 mediates the transport of synaptic vesicles in neuronal cells, while isoform 2 is required for induction of neuronal apoptosis. KIF1C is a new kinesin-like protein involved in vesicle transport from the Golgi apparatus to the endoplasmic reticulum. It has a microtubule plus end-directed motility. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.
Pssm-ID: 438757 [Multi-domain] Cd Length: 101 Bit Score: 118.49 E-value: 2.49e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 453 LPHLIGIDDDLLSTGIILYHLKEGQTYVGREDAMTEQDIVLHGLDLESEHCIFENLNGTVNLIPLNGAQCSVNGIQITEA 532
Cdd:cd22705 1 TPHLVNLNEDPLMSECLLYYIKPGITRVGRADADVPQDIQLSGTHILEEHCTFENEDGVVTLEPCEGALTYVNGKRVTEP 80
|
90 100
....*....|....*....|.
gi 2024393550 533 THLNQGAVILLGRTNMFRFNH 553
Cdd:cd22705 81 TRLKTGSRVILGKNHVFRFNH 101
|
|
| FHA_KIF1A |
cd22726 |
forkhead associated (FHA) domain found in kinesin-like protein KIF1A; KIF1A, also called ... |
454-562 |
1.30e-26 |
|
forkhead associated (FHA) domain found in kinesin-like protein KIF1A; KIF1A, also called axonal transporter of synaptic vesicles (ATSV), microtubule-based motor KIF1A, Unc-104- and KIF1A-related protein, or Unc-104, is an axonal transporter of synaptic vesicles, which is mutated in hereditary sensory and autonomic neuropathy type 2. It is also required for neuronal dense core vesicle (DCV) transport to dendritic spines and axons. The calcium-dependent interaction with CALM1 increases vesicle motility, and interaction with the scaffolding proteins PPFIA2 and TANC2 recruits DCVs to synaptic sites. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.
Pssm-ID: 438778 [Multi-domain] Cd Length: 115 Bit Score: 105.40 E-value: 1.30e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 454 PHLIGIDDDLLSTGIILYHLKEGQTYVGREDAMTEQDIVLHGLDLESEHCIFENLNGT-----VNLIPLNGAQCSVNGIQ 528
Cdd:cd22726 2 PHLVNLNEDPLMSECLLYYIKDGITRVGREDAERRQDIVLSGHFIKEEHCIFRSDTRSggeavVTLEPCEGADTYVNGKK 81
|
90 100 110
....*....|....*....|....*....|....
gi 2024393550 529 ITEATHLNQGAVILLGRTNMFRFNHPKEAAKLRE 562
Cdd:cd22726 82 VTEPSILRSGNRIIMGKSHVFRFNHPEQARQERE 115
|
|
| FHA_KIF14 |
cd22707 |
forkhead associated (FHA) domain found in kinesin-like protein KIF14 and similar proteins; ... |
450-554 |
1.45e-26 |
|
forkhead associated (FHA) domain found in kinesin-like protein KIF14 and similar proteins; KIF14 is a microtubule motor protein that binds to microtubules with high affinity through each tubulin heterodimer and has an ATPase activity. It plays a role in many processes like cell division, cytokinesis and in cell proliferation and apoptosis. KIF14 is a potential oncogene and is involved in the metastasis of various cancers. Mutations of KIF14 cause primary microcephaly by impairing cytokinesis. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.
Pssm-ID: 438759 [Multi-domain] Cd Length: 108 Bit Score: 105.04 E-value: 1.45e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 450 DSELPHLIGIDDDLLSTGIILYHLKEGQTYVGREDAMTEQDIVLHGLDLESEHCIFENLNGTVNLIPLNGAQCSVNGIQI 529
Cdd:cd22707 4 DNKLPNLVNLNEDPQLSEMLLYMLKEGQTRVGRSKASSSHDIQLSGALIADDHCTIENNGGKVTIIPVGDAETYVNGELI 83
|
90 100
....*....|....*....|....*
gi 2024393550 530 TEATHLNQGAVILLGRTNMFRFNHP 554
Cdd:cd22707 84 SEPTVLHHGDRVILGGDHYFRFNHP 108
|
|
| FHA_KIF1B |
cd22727 |
forkhead associated (FHA) domain found in kinesin-like protein KIF1B; KIF1B, also called Klp, ... |
454-556 |
4.73e-24 |
|
forkhead associated (FHA) domain found in kinesin-like protein KIF1B; KIF1B, also called Klp, is a motor for anterograde transport of mitochondria. It has a microtubule plus end-directed motility. Isoform 1 mediates the transport of synaptic vesicles in neuronal cells, while isoform 2 is required for induction of neuronal apoptosis. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.
Pssm-ID: 438779 [Multi-domain] Cd Length: 110 Bit Score: 98.18 E-value: 4.73e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 454 PHLIGIDDDLLSTGIILYHLKEGQTYVGREDAMTEQDIVLHGLDLESEHCIF---ENLNG--TVNLIPLNGAQCSVNGIQ 528
Cdd:cd22727 3 PHLVNLNEDPLMSECLLYYIKDGITRVGQADAERRQDIVLSGAHIKEEHCIFrseRNNNGevIVTLEPCERSETYVNGKR 82
|
90 100
....*....|....*....|....*...
gi 2024393550 529 ITEATHLNQGAVILLGRTNMFRFNHPKE 556
Cdd:cd22727 83 VVQPVQLRSGNRIIMGKNHVFRFNHPEQ 110
|
|
| Motor_domain |
cd01363 |
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the ... |
75-288 |
5.11e-23 |
|
Myosin and Kinesin motor domain; Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Some of the names do not match with what is given in the sequence list. This is because they are based on the current nomenclature by Kollmar/Sebe-Pedros.
Pssm-ID: 276814 [Multi-domain] Cd Length: 170 Bit Score: 97.03 E-value: 5.11e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 75 QETVFKNLGtDVLQSAFEGYN-ACVFAYGQTGSGKSYTMMgnagdaGLIPRICEGLFSKIseKTKRNEASFRTEVSYLEI 153
Cdd:cd01363 32 QPHVFAIAD-PAYQSMLDGYNnQSIFAYGESGAGKTETMK------GVIPYLASVAFNGI--NKGETEGWVYLTEITVTL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 154 YNErvrdllrrkssktnnlrirehpkegpyvedlskhlvqnygdIEELMDAGNINRtTAATGMNDVSSRSHAIFTInftq 233
Cdd:cd01363 103 EDQ-----------------------------------------ILQANPILEAFG-NAKTTRNENSSRFGKFIEI---- 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2024393550 234 akfdsempcetvskihLVDLAGSERadatgatgvrlkeggnINKSLVTLGNVISA 288
Cdd:cd01363 137 ----------------LLDIAGFEI----------------INESLNTLMNVLRA 159
|
|
| FHA_KIF28P |
cd22709 |
forkhead associated (FHA) domain found in kinesin-like protein KIF28P and similar proteins; ... |
454-554 |
1.31e-22 |
|
forkhead associated (FHA) domain found in kinesin-like protein KIF28P and similar proteins; KIF28P, also called kinesin-like protein 6 (KLP6), is a microtubule-dependent motor protein required for mitochondrion morphology and transport of mitochondria in neuronal cells. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.
Pssm-ID: 438761 [Multi-domain] Cd Length: 102 Bit Score: 93.43 E-value: 1.31e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 454 PHLIGIDDDLLSTGIILYHLKEGQTYVGREDAMTEQDIVLHGLDLESEHCIFENLNGTVNLIPLN-GAQCSVNGIQITEA 532
Cdd:cd22709 1 PHLLNLNEDPQLSGVIVHFLQEGETTIGRADAEPEPDIVLSGLSIQKQHAVITNTDGKVTIEPVSpGAKVIVNGVPVTGE 80
|
90 100
....*....|....*....|..
gi 2024393550 533 THLNQGAVILLGRTNMFRFNHP 554
Cdd:cd22709 81 TELHHLDRVILGSNHLYVFVGP 102
|
|
| FHA_KIF13 |
cd22706 |
forkhead associated (FHA) domain found in the kinesin-like protein KIF13 family; The KIF13 ... |
471-554 |
3.74e-21 |
|
forkhead associated (FHA) domain found in the kinesin-like protein KIF13 family; The KIF13 family includes KIF13A and KIF13B. KIF13A, also called kinesin-like protein RBKIN, is a plus end-directed microtubule-dependent motor protein involved in intracellular transport and in regulating various processes such as mannose-6-phosphate receptor (M6PR) transport to the plasma membrane, endosomal sorting during melanosome biogenesis, and cytokinesis. It mediates the transport of M6PR-containing vesicles from trans-Golgi network to the plasma membrane via direct interaction with the AP-1 complex. During melanosome maturation, KIF13A is required for delivering melanogenic enzymes from recycling endosomes to nascent melanosomes by creating peripheral recycling endosomal subdomains in melanocytes. It is also required for the abscission step in cytokinesis: it mediates translocation of ZFYVE26, and possibly TTC19, to the midbody during cytokinesis. KIF13B, also called kinesin-like protein GAKIN, is a novel kinesin-like protein that associates with the human homolog of the Drosophila discs large tumor suppressor in T lymphocytes. It is involved in reorganization of the cortical cytoskeleton. It regulates axon formation by promoting the formation of extra axons. KIF13B may be functionally important for the intracellular trafficking of membrane-associated guanylate kinase homologs (MAGUKs) and associated protein complexes. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.
Pssm-ID: 438758 [Multi-domain] Cd Length: 101 Bit Score: 89.28 E-value: 3.74e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 471 YHLKEgQTYVGREDAMTEQDIVLHGLDLESEHCIFENLNGTVNLIPLNGAQCSVNGIQITEATHLNQGAVILLGRTNMFR 550
Cdd:cd22706 19 YYLKE-HTLIGRSDAPTQQDIQLSGLGIQPEHCIITIENEDVYLTPLEGARTCVNGSIVTEKTQLRHGDRILWGNNHFFR 97
|
....
gi 2024393550 551 FNHP 554
Cdd:cd22706 98 LNCP 101
|
|
| FHA_KIF1C |
cd22728 |
forkhead associated (FHA) domain found in kinesin-like protein KIF1C; KIF1C is a new ... |
454-553 |
1.40e-19 |
|
forkhead associated (FHA) domain found in kinesin-like protein KIF1C; KIF1C is a new kinesin-like protein involved in vesicle transport from the Golgi apparatus to the endoplasmic reticulum. It has a microtubule plus end-directed motility. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.
Pssm-ID: 438780 [Multi-domain] Cd Length: 102 Bit Score: 84.92 E-value: 1.40e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 454 PHLIGIDDDLLSTGIILYHLKEGQTYVGREDAmteqDIVLHGLDLESEHCIFE---NLNG--TVNLIPLNGAQCSVNGIQ 528
Cdd:cd22728 2 PHLVNLNEDPLMSECLLYHIKDGVTRVGQVDV----DIKLSGQFIREQHCLFRsipNPSGevVVTLEPCEGAETYVNGKQ 77
|
90 100
....*....|....*....|....*
gi 2024393550 529 ITEATHLNQGAVILLGRTNMFRFNH 553
Cdd:cd22728 78 VTEPLVLKSGNRIVMGKNHVFRFNH 102
|
|
| Microtub_bd |
pfam16796 |
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding ... |
3-162 |
8.59e-17 |
|
Microtubule binding; This motor homology domain binds microtubules and lacks an ATP-binding site.
Pssm-ID: 465274 [Multi-domain] Cd Length: 144 Bit Score: 78.42 E-value: 8.59e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 3 SVKVAVRVRPMNRREkdlnakFIISMEKNKTTITnlkipeggtgdTGRERTKTFTYDfSYFSADSKSpSFVCQEtvFKNL 82
Cdd:pfam16796 21 NIRVFARVRPELLSE------AQIDYPDETSSDG-----------KIGSKNKSFSFD-RVFPPESEQ-EDVFQE--ISQL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 83 gtdvLQSAFEGYNACVFAYGQTGSGksytmmgnaGDAGLIPRICEGLFSKISEKTKrnEASFRTEVSYLEIYNERVRDLL 162
Cdd:pfam16796 80 ----VQSCLDGYNVCIFAYGQTGSG---------SNDGMIPRAREQIFRFISSLKK--GWKYTIELQFVEIYNESSQDLL 144
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
605-1088 |
9.02e-17 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 86.14 E-value: 9.02e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 605 LRLEFERQQREELEkLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQLQIRKQEESLKRRSVHIESRLKDLL 684
Cdd:COG1196 279 LELELEEAQAEEYE-LLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAE 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 685 AEKEKfeeeRLREQQEIELQKKKQQEEIFARVKEELQRLQELNHKEKAEKmQIFRELEKLKKEKDEQYIKLESEKKRIEE 764
Cdd:COG1196 358 AELAE----AEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLE-ELEEAEEALLERLERLEEELEELEEALAE 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 765 QEREQVMLVAHLEEQLREKQVmIQLLKRGDVQRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKAQHSFIEFKKKQL 844
Cdd:COG1196 433 LEEEEEEEEEALEEAAEEEAE-LEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVK 511
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 845 EQLTILEKDLVQQMDHLEKDIAHEKETLEYLKLAEEEHVNLKKDDENFGDAVFKAEEFDMVKLTEYRLqSKVRQLEYLKN 924
Cdd:COG1196 512 AALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPL-DKIRARAALAA 590
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 925 NHLPALLEEKQRATEVLDRGLLGLDNTL--YQIEKEIEDKEEQLAQYRASTNQLQQLQETFEFT---------------- 986
Cdd:COG1196 591 ALARGAIGAAVDLVASDLREADARYYVLgdTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEggsaggsltggsrrel 670
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 987 ANVARQEEKVRKKEKEILQSREKQQREALEQAVAKLERRHSALQRRSTIDFEIEEQKQKLATLNNSCSEQ----AGLQAS 1062
Cdd:COG1196 671 LAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEElleeEELLEE 750
|
490 500
....*....|....*....|....*.
gi 2024393550 1063 LEAEQKALEQDRERLDQEIQQLKQKI 1088
Cdd:COG1196 751 EALEELPEPPDLEELERELERLEREI 776
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
608-1090 |
2.77e-16 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 84.60 E-value: 2.77e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 608 EFERQQREELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQLQIRKQEESLKRrsvhiESRLKDLLAEK 687
Cdd:COG1196 236 ELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELAR-----LEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 688 EKFEEERLREQQEIELQKKKQQEEIFARVKEELQRLQELnHKEKAEKMQIFRELEKLKKEKDEQYIKLESEKKRIEEQER 767
Cdd:COG1196 311 RRELEERLEELEEELAELEEELEELEEELEELEEELEEA-EEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELL 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 768 EQVMLVAHLEEQLREKQVMIQLLKRGDVQRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKAQhsfiefkkKQLEQL 847
Cdd:COG1196 390 EALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELE--------EEEEAL 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 848 TILEKDLVQQMDHLEKDIAHEKETLEYLKLAEEEHVNLKKDDENFGDAVF----------------------KAEEFDMV 905
Cdd:COG1196 462 LELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEADYEGFLEGVKaalllaglrglagavavligveAAYEAALE 541
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 906 KLTEYRLQSKV--------RQLEYLKNNHL------------PALLEEKQRATEVLDRGLLGLDNTLYQIEKEIEDKEEQ 965
Cdd:COG1196 542 AALAAALQNIVveddevaaAAIEYLKAAKAgratflpldkirARAALAAALARGAIGAAVDLVASDLREADARYYVLGDT 621
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 966 LAQYRASTNQLQQLQETFEFTANVARQEEKVRKKEKEILQSREKQQREALEQAVAKLERRHSALQRRSTIDFEIEEQKQK 1045
Cdd:COG1196 622 LLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLA 701
|
490 500 510 520
....*....|....*....|....*....|....*....|....*
gi 2024393550 1046 LATLNNSCSEQAGLQASLEAEQKALEQDRERLDQEIQQLKQKIYE 1090
Cdd:COG1196 702 EEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEE 746
|
|
| FHA_AFDN |
cd22711 |
forkhead associated (FHA) domain found in afadin and similar proteins; Afadin, also called ... |
453-554 |
2.34e-14 |
|
forkhead associated (FHA) domain found in afadin and similar proteins; Afadin, also called ALL1-fused gene from chromosome 6 protein, protein AF-6, Afadin adherens junction formation factor, or MLLT4, is a nectin- and actin-filament-binding protein that connects nectin to the actin cytoskeleton. It is essential for the organization of adherens junctions. It may play a key role in the organization of epithelial structures of the embryonic ectoderm. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.
Pssm-ID: 438763 [Multi-domain] Cd Length: 106 Bit Score: 70.04 E-value: 2.34e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 453 LPHLI-----GIDDDLLstgiILYHLKEGQTYVG--REDAMTEQDIVLHGLDLESEHCIFENLNGTVNLIPLNG-AQCSV 524
Cdd:cd22711 1 LPYLLelspdGSDRDKP----RRHRLQPNVTEVGseRSPANSGQFIQLFGPDILPRHCVITHMEGVVTVTPASQdAETYV 76
|
90 100 110
....*....|....*....|....*....|
gi 2024393550 525 NGIQITEATHLNQGAVILLGRTNMFRFNHP 554
Cdd:cd22711 77 NGQRIYETTMLQHGMVVQFGRSHTFRFCDP 106
|
|
| Kinesin_assoc |
pfam16183 |
Kinesin-associated; |
364-476 |
2.10e-12 |
|
Kinesin-associated;
Pssm-ID: 465047 [Multi-domain] Cd Length: 177 Bit Score: 66.79 E-value: 2.10e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 364 INEDPNVKLIRELRAEIARLKALL-AQG----------------NQIA-------------------------------- 394
Cdd:pfam16183 3 INEDPNNKLIRELKDEVARLRDLLyAQGlgdiidtiahptkkraNTPAanasaataamagaspspslsalssraasvssl 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 395 ---LLDSPTALSMEEKLQQNEARVQELTKEWTNKWNETQNI-------LKEQTLALRKEG--IGVVLDSELPHLIGIDDD 462
Cdd:pfam16183 83 herIMFTPGSEEAIERLKETEKIIAELNETWEEKLRKTEAIrmerealLAEMGVAIREDGgtLGVFSPKKTPHLVNLNED 162
|
170
....*....|....
gi 2024393550 463 LLSTGIILYHLKEG 476
Cdd:pfam16183 163 PLMSECLLYYIKDG 176
|
|
| FHA_KIF13A |
cd22729 |
forkhead associated (FHA) domain found in kinesin-like protein KIF13A; KIF13A, also called ... |
456-564 |
2.49e-12 |
|
forkhead associated (FHA) domain found in kinesin-like protein KIF13A; KIF13A, also called kinesin-like protein RBKIN, is a plus end-directed microtubule-dependent motor protein involved in intracellular transport and in regulating various processes such as mannose-6-phosphate receptor (M6PR) transport to the plasma membrane, endosomal sorting during melanosome biogenesis, and cytokinesis. It mediates the transport of M6PR-containing vesicles from trans-Golgi network to the plasma membrane via direct interaction with the AP-1 complex. During melanosome maturation, KIF13A is required for delivering melanogenic enzymes from recycling endosomes to nascent melanosomes by creating peripheral recycling endosomal subdomains in melanocytes. It is also required for the abscission step in cytokinesis: it mediates translocation of ZFYVE26, and possibly TTC19, to the midbody during cytokinesis. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.
Pssm-ID: 438781 [Multi-domain] Cd Length: 109 Bit Score: 64.52 E-value: 2.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 456 LIGIDDDLLSTGIILYHLKeGQTYVGredAMTEQDIVLHGLDLESEHCIFE-NLNGTVNLIPLNGAQCSVNGIQITEATH 534
Cdd:cd22729 4 LVNLNADPALNELLVYYLK-DHTRVG---ADTSQDIQLFGIGIQPEHCVIDiAADGDVTLTPKENARTCVNGTLVCSVTQ 79
|
90 100 110
....*....|....*....|....*....|
gi 2024393550 535 LNQGAVILLGRTNMFRFNHPKEAAKLREKR 564
Cdd:cd22729 80 LWHGDRILWGNNHFFRINLPKRKRRDWLKE 109
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
605-1106 |
6.71e-12 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 70.56 E-value: 6.71e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 605 LRLEFERQQREELEKLESKRKQIE---EMEEKQRSD----KAELVRMQQEVESQRKETEIVQLQIRKQEESLKRRSVHiE 677
Cdd:PTZ00121 1283 LKKAEEKKKADEAKKAEEKKKADEakkKAEEAKKADeakkKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE-A 1361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 678 SRLKDLLAEKEKFEEERLREQQEIELQKKKQQEEIFARVKEELQRLQELNHKEKAEKmqifrELEKLKKEKDEQYIKLES 757
Cdd:PTZ00121 1362 AEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK-----KADEAKKKAEEKKKADEA 1436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 758 EKKRIEEQEREQVMLVAHLEEQLREKQVMIQLLKRGD-VQRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKAQHSF 836
Cdd:PTZ00121 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADeAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK 1516
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 837 IEFKKKQLEQLTILEKdlVQQMDHLEKdiAHEKETLEYLKLAEE----EHV----NLKKDDENFGDAVFKAEEFDMVKLT 908
Cdd:PTZ00121 1517 KAEEAKKADEAKKAEE--AKKADEAKK--AEEKKKADELKKAEElkkaEEKkkaeEAKKAEEDKNMALRKAEEAKKAEEA 1592
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 909 EYRLQSKVRQLE-YLKNNHLPALLEEKQRATEVldrgllgldNTLYQIEKEIEDKEEQLAQYRASTNQLQQLQETFEFTA 987
Cdd:PTZ00121 1593 RIEEVMKLYEEEkKMKAEEAKKAEEAKIKAEEL---------KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKA 1663
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 988 NVARQEEKVRKKEKEILQSREKQQREALEQAVAKLERRHSALQRRSTIDFEIE--EQKQKLATLNNSCSEQAGLQAslEA 1065
Cdd:PTZ00121 1664 AEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKkaEELKKAEEENKIKAEEAKKEA--EE 1741
|
490 500 510 520
....*....|....*....|....*....|....*....|....
gi 2024393550 1066 EQKALEQDR--ERLDQEIQQL-KQKIYESDGGQKGNHGMLEEKL 1106
Cdd:PTZ00121 1742 DKKKAEEAKkdEEEKKKIAHLkKEEEKKAEEIRKEKEAVIEEEL 1785
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
611-880 |
4.63e-11 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 67.07 E-value: 4.63e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 611 RQQREELEKLESKRKQIEEME-------EKQRSDKAELVRMQQEVEsqrKETEIVQLQIRKQE-ESLKRRSVHIE-SRLK 681
Cdd:pfam17380 302 RQEKEEKAREVERRRKLEEAEkarqaemDRQAAIYAEQERMAMERE---RELERIRQEERKRElERIRQEEIAMEiSRMR 378
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 682 DLlaEKEKFEEERLREQQEIELQ---KKKQQEEIFARVKEELQRLQELNHKEKAEKMQifRELEKLKKEKDEqyiklESE 758
Cdd:pfam17380 379 EL--ERLQMERQQKNERVRQELEaarKVKILEEERQRKIQQQKVEMEQIRAEQEEARQ--REVRRLEEERAR-----EME 449
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 759 KKRIEEQEREQVMLVAHLEEQLREKQVMIQLLKRGDVQRVEEEKR-----DLEDIRESLLKVKEARSEGEENCEELEKAQ 833
Cdd:pfam17380 450 RVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRRkilekELEERKQAMIEEERKRKLLEKEMEERQKAI 529
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 2024393550 834 HSFIEFKKKQLEQLTILEKDLVQQMDHLEKDIAHEKETLEYLKLAEE 880
Cdd:pfam17380 530 YEEERRREAEEERRKQQEMEERRRIQEQMRKATEERSRLEAMERERE 576
|
|
| FHA_KIF13B |
cd22730 |
forkhead associated (FHA) domain found in kinesin-like protein KIF13B; KIF13B, also called ... |
456-554 |
8.50e-11 |
|
forkhead associated (FHA) domain found in kinesin-like protein KIF13B; KIF13B, also called kinesin-like protein GAKIN, is a novel kinesin-like protein that associates with the human homolog of the Drosophila discs large tumor suppressor in T lymphocytes. It is involved in reorganization of the cortical cytoskeleton. It regulates axon formation by promoting the formation of extra axons. KIF13B may be functionally important for the intracellular trafficking of membrane-associated guanylate kinase homologs (MAGUKs) and associated protein complexes. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.
Pssm-ID: 438782 [Multi-domain] Cd Length: 99 Bit Score: 59.93 E-value: 8.50e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 456 LIGIDDDLLSTGIILYHLKEgQTYVGREDAmteQDIVLHGLDLESEHCIFE-NLNGTVNLIPLNGAQCSVNGIQITEATH 534
Cdd:cd22730 4 LVNLNADPALNELLVYYLKE-HTLIGSADS---QDIQLCGMGILPEHCIIDiTPEGQVMLTPQKNTRTFVNGSAVTSPIQ 79
|
90 100
....*....|....*....|
gi 2024393550 535 LNQGAVILLGRTNMFRFNHP 554
Cdd:cd22730 80 LHHGDRILWGNNHFFRINLP 99
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
610-1088 |
2.06e-10 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 65.34 E-value: 2.06e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 610 ERQQREELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQLQIRKQEESLKRRSVHIESRLKDLLAEKEK 689
Cdd:COG1196 339 LEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLER 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 690 FEEERLREQQEIE--LQKKKQQEEIFARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQYIKLESEKKRIEEQER 767
Cdd:COG1196 419 LEEELEELEEALAelEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLE 498
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 768 EQVMLVAHLEEQLREKQVMIQLLKRGDVQRVeeekRDLEDIRESLLKVKEARSEGEENCEELEKAQHSFIEFKKKQLEQL 847
Cdd:COG1196 499 AEADYEGFLEGVKAALLLAGLRGLAGAVAVL----IGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRA 574
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 848 TILEKDLVQQMDHLEKDIAHEKETLEYLKLA---EEEHVNLKKDDENFGDAVFKAEEFDMVKLTEYRLQSKVRQLEYLKN 924
Cdd:COG1196 575 TFLPLDKIRARAALAAALARGAIGAAVDLVAsdlREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGE 654
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 925 NHLPALLEEKQRATEVLDRGLLGLDNTLYQIEKEIEDKEEQLAQYRASTNQLQQLQETFEFTANVARQEEKVRKKEKEIL 1004
Cdd:COG1196 655 GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAER 734
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 1005 QSREKQQREALEQAVAKLERRHSALQRRSTIDFEIEEQKQKLATLN--NSCSEQAglQASLEAEQKALEQDRERLDQEIQ 1082
Cdd:COG1196 735 EELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEALGpvNLLAIEE--YEELEERYDFLSEQREDLEEARE 812
|
....*.
gi 2024393550 1083 QLKQKI 1088
Cdd:COG1196 813 TLEEAI 818
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
605-906 |
4.39e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 4.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 605 LRLEFERQQREELE---KLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIvqlqIRKQEESLKRRSVHIESRLK 681
Cdd:TIGR02168 682 LEEKIEELEEKIAElekALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR----LEAEVEQLEERIAQLSKELT 757
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 682 DLLAEKEKFEEERLREQQEIE--LQKKKQQEEIFARVKEELQ----RLQELN------HKEKAEKMQIFRELEKLKKEKD 749
Cdd:TIGR02168 758 ELEAEIEELEERLEEAEEELAeaEAEIEELEAQIEQLKEELKalreALDELRaeltllNEEAANLRERLESLERRIAATE 837
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 750 EQYIKLESEKKRIEEQEREQVMLVAHLEEQLREKQVMIQLL---KRGDVQRVEEEKRDLEDIRESLLKVKEARSEGEENC 826
Cdd:TIGR02168 838 RRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALlneRASLEEALALLRSELEELSEELRELESKRSELRREL 917
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 827 EELEKAQHSFIEfKKKQLEQ--LTILEKDLVQQMDHLEKDIAHEKETLEYLKLAEEEHVNLKKDDENFGDAVFKA-EEFD 903
Cdd:TIGR02168 918 EELREKLAQLEL-RLEGLEVriDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAiEEYE 996
|
...
gi 2024393550 904 MVK 906
Cdd:TIGR02168 997 ELK 999
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
606-863 |
4.62e-10 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 64.31 E-value: 4.62e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 606 RLEFERQQREELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVEsqRKETEIVQlqIRKQEESLKRRSVHIESRLKDLLA 685
Cdd:TIGR02168 255 LEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEIS--RLEQQKQI--LRERLANLERQLEELEAQLEELES 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 686 EKEKFEEERLREQQEIElQKKKQQEEIFARVKEELQRLQELNHKEKAekmqIFRELEKLKKEKDEQYIKLESEKKRIEEQ 765
Cdd:TIGR02168 331 KLDELAEELAELEEKLE-ELKEELESLEAELEELEAELEELESRLEE----LEEQLETLRSKVAQLELQIASLNNEIERL 405
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 766 EREQVMLVAHLEEQLREKQVMIQLLKRGDVQRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKAQHSFIEFKKKQLE 845
Cdd:TIGR02168 406 EARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELA 485
|
250
....*....|....*...
gi 2024393550 846 QLTILEKDLVQQMDHLEK 863
Cdd:TIGR02168 486 QLQARLDSLERLQENLEG 503
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
602-879 |
7.55e-10 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 63.45 E-value: 7.55e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 602 PICLRLEFERQQREELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQLQIRKQEESLKRRSVHIESRLK 681
Cdd:pfam02463 189 IIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQEIEKEEEKLA 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 682 DLLAEKEKFEEERLREQQEIELQKKKQQEEIFARVK---------EELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQY 752
Cdd:pfam02463 269 QVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKlerrkvddeEKLKESEKEKKKAEKELKKEKEEIEELEKELKELE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 753 IKLESEKKRIEEQEREQVMLVAHLEEQLREKQVMIQLLKRGDVQRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKA 832
Cdd:pfam02463 349 IKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSEEEKEAQLLLELARQLEDLLKEEKKEE 428
|
250 260 270 280
....*....|....*....|....*....|....*....|....*..
gi 2024393550 833 qhsfIEFKKKQLEQLTILEKDLVQQMDHLEKDIAHEKETLEYLKLAE 879
Cdd:pfam02463 429 ----LEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSE 471
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
606-817 |
8.87e-10 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 63.22 E-value: 8.87e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 606 RLEFERQQREEL--EKLESKRKQIEEMEEKQRSDKAELVRMQQeVESQRKETEIVQLQIRKQEESLKRRSVHIEsrlkdl 683
Cdd:pfam17380 382 RLQMERQQKNERvrQELEAARKVKILEEERQRKIQQQKVEMEQ-IRAEQEEARQREVRRLEEERAREMERVRLE------ 454
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 684 laEKEKFEEERLREQQEIELQKKKQQEEifaRVKEELQRLQELNHK-----EKAEKMQIFRELEK---LKKEKDE-QYIK 754
Cdd:pfam17380 455 --EQERQQQVERLRQQEEERKRKKLELE---KEKRDRKRAEEQRRKilekeLEERKQAMIEEERKrklLEKEMEErQKAI 529
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024393550 755 LESEKKRIEEQEREQVMlvaHLEEQLR-EKQVMIQLLKRGDVQRVEEEKRDLEDIRESLLKVKE 817
Cdd:pfam17380 530 YEEERRREAEEERRKQQ---EMEERRRiQEQMRKATEERSRLEAMEREREMMRQIVESEKARAE 590
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
611-1082 |
1.18e-08 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 59.40 E-value: 1.18e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 611 RQQREELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVES-----QRKETEIVQLQIRKQEESLKRRSVHIESRLKDLLA 685
Cdd:COG4717 74 KELEEELKEAEEKEEEYAELQEELEELEEELEELEAELEElreelEKLEKLLQLLPLYQELEALEAELAELPERLEELEE 153
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 686 EKEKFEEERLREQqeielQKKKQQEEIFARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQYIKLESEKKRIEEQ 765
Cdd:COG4717 154 RLEELRELEEELE-----ELEAELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELEEELEEAQEELEELEEE 228
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 766 --EREQVMLVAHLEEQLREKQVMIQLLKrgdvqrveeekrdledireSLLKVKEARSEGEENCEELEKAQHSFIEFKKKQ 843
Cdd:COG4717 229 leQLENELEAAALEERLKEARLLLLIAA-------------------ALLALLGLGGSLLSLILTIAGVLFLVLGLLALL 289
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 844 LEQLTILEKDLVQQMDHLEKDIAHEK-ETLEYLKLAEEEHVNLKKDDENFGDAVFKAEEfdmvklteyrLQSKVRQLEYL 922
Cdd:COG4717 290 FLLLAREKASLGKEAEELQALPALEElEEEELEELLAALGLPPDLSPEELLELLDRIEE----------LQELLREAEEL 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 923 KNNHLPALLEEKQRAteVLDRGLLGLDNTLYQIEKEIEDKEEQLAQYRASTNQLQQLQETF-EFTANVARQEEKVRKKEK 1001
Cdd:COG4717 360 EEELQLEELEQEIAA--LLAEAGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELeELLEALDEEELEEELEEL 437
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 1002 EILQSREKQQREALEQAVAKLERRHSALQRrstiDFEIEEQKQKLATLNNSCSEQAGLQASLEAEQKALEQDRERLDQEI 1081
Cdd:COG4717 438 EEELEELEEELEELREELAELEAELEQLEE----DGELAELLQELEELKAELRELAEEWAALKLALELLEEAREEYREER 513
|
.
gi 2024393550 1082 Q 1082
Cdd:COG4717 514 L 514
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
605-944 |
1.76e-08 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 59.21 E-value: 1.76e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 605 LRLEFERQQREELEKLESKRKQIEEMEEKQRSDKAELVRMQ-QEVESQRKETEIVQLQIRKQEESLKRRSVHIESRLKDL 683
Cdd:pfam02463 163 AGSRLKRKKKEALKKLIEETENLAELIIDLEELKLQELKLKeQAKKALEYYQLKEKLELEEEYLLYLDYLKLNEERIDLL 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 684 LAEKEKFEEERLREQQEIELQKKKQQEE-----IFARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQYIKLESE 758
Cdd:pfam02463 243 QELLRDEQEEIESSKQEIEKEEEKLAQVlkenkEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKE 322
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 759 KKRIEEQEREQVMLVAHLEEQLREKQVMIQLLKRGDVQRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKAQHSFIE 838
Cdd:pfam02463 323 KKKAEKELKKEKEEIEELEKELKELEIKREAEEEEEEELEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKSE 402
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 839 FKKKQLEQLTILEKDLVQQMDhLEKDIAHEKETLEYLKLAEEEHVNLKKDDENFGDAVFKA--EEFDMVKLTEYRLQSKV 916
Cdd:pfam02463 403 EEKEAQLLLELARQLEDLLKE-EKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKdeLELKKSEDLLKETQLVK 481
|
330 340
....*....|....*....|....*...
gi 2024393550 917 RQLEYLKNNHLPALLEEKQRATEVLDRG 944
Cdd:pfam02463 482 LQEQLELLLSRQKLEERSQKESKARSGL 509
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
611-782 |
4.36e-08 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 57.27 E-value: 4.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 611 RQQREELEKLESKRKQIEEMEEKQRS----DKAELVRMQQEVESQRKETEIVQLQIRKQEESLKRRSVHIESRLKDLLAE 686
Cdd:pfam15709 339 RAERAEMRRLEVERKRREQEEQRRLQqeqlERAEKMREELELEQQRRFEEIRLRKQRLEEERQRQEEEERKQRLQLQAAQ 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 687 KEKFEEERLREQQEIELQKKKQQEEIfARVKEELQRLQELNHK--EKAEKMQIFRELEKL----KKEKDEQYIKLESEKK 760
Cdd:pfam15709 419 ERARQQQEEFRRKLQELQRKKQQEEA-ERAEAEKQRQKELEMQlaEEQKRLMEMAEEERLeyqrQKQEAEEKARLEAEER 497
|
170 180
....*....|....*....|....*
gi 2024393550 761 RIEEQEREQVML---VAHLEEQLRE 782
Cdd:pfam15709 498 RQKEEEAARLALeeaMKQAQEQARQ 522
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
608-888 |
5.67e-08 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 57.37 E-value: 5.67e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 608 EFERQqreeLEKLESKRKQIEEMEE-KQRSDKAELVRMQQEVESQRKETEIVQLQIRK---QEESLKRRSVHIES----- 678
Cdd:TIGR02168 197 ELERQ----LKSLERQAEKAERYKElKAELRELELALLVLRLEELREELEELQEELKEaeeELEELTAELQELEEkleel 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 679 RLKDLLAEKEKFEEERLREQQEIELQKKKQQEEI----FARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQYIK 754
Cdd:TIGR02168 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQIlrerLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEE 352
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 755 LESEKKRIEEQEREQVMLVAHLE------EQLREKQVMIQL---LKRGDVQRVEEEKRDLEDIRESLLkvKEARSEGEEN 825
Cdd:TIGR02168 353 LESLEAELEELEAELEELESRLEeleeqlETLRSKVAQLELqiaSLNNEIERLEARLERLEDRRERLQ--QEIEELLKKL 430
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024393550 826 CEELEKAQHSFIEFKKKQLEQLTILEKDLVQQMDHLEKDIAhEKETLEYLKLAEEEHVNLKKD 888
Cdd:TIGR02168 431 EEAELKELQAELEELEEELEELQEELERLEEALEELREELE-EAEQALDAAERELAQLQARLD 492
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
605-817 |
8.11e-08 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 56.75 E-value: 8.11e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 605 LRLEFERQQREELEKLESKRKQIEEMEEKQRSDKAELvrmqqevesQRKETEIVQLQirKQEESLKRRSVHIESRLKDLL 684
Cdd:pfam10174 455 LKEQREREDRERLEELESLKKENKDLKEKVSALQPEL---------TEKESSLIDLK--EHASSLASSGLKKDSKLKSLE 523
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 685 AEKEKfeeeRLREQQEIELQ-KKKQQEEIFARVKEEL-QRLQELN-----HKEKAEKMQ--------IFRELEKLKKEKD 749
Cdd:pfam10174 524 IAVEQ----KKEECSKLENQlKKAHNAEEAVRTNPEInDRIRLLEqevarYKEESGKAQaeverllgILREVENEKNDKD 599
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024393550 750 EQYIKLESEKKRieeQEREQVMLVAHL-----EEQLREKQVMIQLLKRGDVQRVEEEKRDLEDIRESLLKVKE 817
Cdd:pfam10174 600 KKIAELESLTLR---QMKEQNKKVANIkhgqqEMKKKGAQLLEEARRREDNLADNSQQLQLEELMGALEKTRQ 669
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
606-819 |
9.32e-08 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.61 E-value: 9.32e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 606 RLEFERQQREELEK-LESKRKQIEEMEEKQRSDKAELVRMQQEVESQ----RKETEIVQLQIRKqeeslKRRSVHIE-SR 679
Cdd:TIGR02169 231 EKEALERQKEAIERqLASLEEELEKLTEEISELEKRLEEIEQLLEELnkkiKDLGEEEQLRVKE-----KIGELEAEiAS 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 680 LKDLLAEKEKFEEERLREQQEIELQKKKQQEEI------FARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQYI 753
Cdd:TIGR02169 306 LERSIAEKERELEDAEERLAKLEAEIDKLLAEIeelereIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRD 385
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024393550 754 KLESEKKRIEEQEREqvmlvahLEEQLREKQVMIQLLKRGDvQRVEEEKRDLEDIRESLLKVKEAR 819
Cdd:TIGR02169 386 ELKDYREKLEKLKRE-------INELKRELDRLQEELQRLS-EELADLNAAIAGIEAKINELEEEK 443
|
|
| FHA |
cd00060 |
forkhead associated (FHA) domain superfamily; Forkhead-associated (FHA) domains are small ... |
455-551 |
1.05e-07 |
|
forkhead associated (FHA) domain superfamily; Forkhead-associated (FHA) domains are small phosphopeptide recognition modules mostly found in eubacteria and eukaryotes. It is about 95-120 residues long that fold into an 11-stranded beta-sandwich. FHA domains can mediate the recognition of phosphorylated and non-phosphorylated substrates, as well as protein oligomerization. They specifically recognize threonine phosphorylation (pThr) accompanying activation of protein serine/threonine kinases. FHA domains show diverse ligand specificity. They may recognize the pTXXD motif, the pTXXI/L motif, and TQ clusters (singly and multiply phosphorylated). In eukaryotes, FHA superfamily members include forkhead-type transcription factors, as well as other signaling proteins, such as many regulatory proteins, kinases, phosphatases, motor proteins called kinesins, and metabolic enzymes. Many of them localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. FHA domains play important roles in human diseases, particularly in relation to DNA damage responses and cancers. In bacteria, FHA domain-containing proteins may participate in injection of viral proteins into host cells, transmembrane transporters, and cell division. FHA domain-containing proteins rarely include more than one copy of the domain. The only exception in eukaryotes is the checkpoint kinase Rad53 from Saccharomyces cerevisiae, which harbors two FHA domains (FHA1 and FHA2) flanking a central kinase domain. The two FHA domains recognize different phosphorylated targets and function independently from one another. In contrast, Mycobacterium tuberculosis ABC transporter Rv1747 contains two FHA domains but only one of them is essential for protein function.
Pssm-ID: 438714 [Multi-domain] Cd Length: 92 Bit Score: 50.74 E-value: 1.05e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 455 HLIGIDDDllsTGIILYHLKEGQTYVGREDamtEQDIVLHGLDLESEHCIFENLNGTVNLIPL---NGaqCSVNGIQITE 531
Cdd:cd00060 1 RLIVLDGD---GGGREFPLTKGVVTIGRSP---DCDIVLDDPSVSRRHARIEVDGGGVYLEDLgstNG--TFVNGKRITP 72
|
90 100
....*....|....*....|
gi 2024393550 532 ATHLNQGAVILLGRTNmFRF 551
Cdd:cd00060 73 PVPLQDGDVIRLGDTT-FRF 91
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
609-940 |
1.13e-07 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 56.69 E-value: 1.13e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 609 FERQQREELEKLESKRKQIEEMEEKQRSDKAELVRMQQEV----ESQRKETEIVQLQIRKQEESlkrRSVHIESRLKDll 684
Cdd:PTZ00121 1100 AEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDArkaeEARKAEDAKRVEIARKAEDA---RKAEEARKAED-- 1174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 685 AEKEKFEEERLREQQEIELQKKKQQEEI-FARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEqyiklesekKRIE 763
Cdd:PTZ00121 1175 AKKAEAARKAEEVRKAEELRKAEDARKAeAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEE---------AKKA 1245
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 764 EQEREQvmlvahlEEQLREKQVMIQLLKRGDVQRVEEEKRDLEDIR--ESLLKVKEARSEGEENCEELEKAQHSfiefKK 841
Cdd:PTZ00121 1246 EEERNN-------EEIRKFEEARMAHFARRQAAIKAEEARKADELKkaEEKKKADEAKKAEEKKKADEAKKKAE----EA 1314
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 842 KQLEQLTILEKDLVQQMDHLEKDIAHEKETLEYLKLAEEEHVNLKKDDENFGDAVFKAEEFDMVKLTEYRLQS-KVRQLE 920
Cdd:PTZ00121 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAeEKKKAD 1394
|
330 340
....*....|....*....|
gi 2024393550 921 YLKNNhlpaLLEEKQRATEV 940
Cdd:PTZ00121 1395 EAKKK----AEEDKKKADEL 1410
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
627-920 |
1.42e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 56.23 E-value: 1.42e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 627 IEEMEEKQRSDKAELvrmqQEVESQRKETEIVQLQIRKQEESLKRRSVHIEsRLKDLLAEKEKFeeerlreQQEIELQKK 706
Cdd:TIGR02169 165 VAEFDRKKEKALEEL----EEVEENIERLDLIIDEKRQQLERLRREREKAE-RYQALLKEKREY-------EGYELLKEK 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 707 KQQEEIFARVKEELQRLQElnhkekaEKMQIFRELEKLKKEKDEQYIKLESEKKRIEEQ-EREQVmlvaHLEEQLREKQV 785
Cdd:TIGR02169 233 EALERQKEAIERQLASLEE-------ELEKLTEEISELEKRLEEIEQLLEELNKKIKDLgEEEQL----RVKEKIGELEA 301
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 786 MIQLLKRgdvqRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKAqhsfIEFKKKQLEQLTILEKDLVQQMDHLEKDI 865
Cdd:TIGR02169 302 EIASLER----SIAEKERELEDAEERLAKLEAEIDKLLAEIEELERE----IEEERKRRDKLTEEYAELKEELEDLRAEL 373
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2024393550 866 AHEKETLEYLKlaeEEHVNLKKDDENFGdavfkaEEFDMVKLTEYRLQSKVRQLE 920
Cdd:TIGR02169 374 EEVDKEFAETR---DELKDYREKLEKLK------REINELKRELDRLQEELQRLS 419
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
607-881 |
1.57e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.84 E-value: 1.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 607 LEFERQQREELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEivqlQIRKQEESLKRRSVHIESrLKDLLAE 686
Cdd:PRK03918 168 GEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELP----ELREELEKLEKEVKELEE-LKEEIEE 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 687 KEKFEEERLREQQEIElQKKKQQEEIFARVKEELQRLQElnhkekaekmqIFRELEKLKKEKDEqYIKLESEKKRIEEQE 766
Cdd:PRK03918 243 LEKELESLEGSKRKLE-EKIRELEERIEELKKEIEELEE-----------KVKELKELKEKAEE-YIKLSEFYEEYLDEL 309
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 767 REQVMLVAHLEEQLREKQVMIQLL--KRGDVQRVEEE----KRDLEDIRESLLKVKEARSEGEENCEELEKAQHSFIEFK 840
Cdd:PRK03918 310 REIEKRLSRLEEEINGIEERIKELeeKEERLEELKKKlkelEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKL 389
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 2024393550 841 KKQLEQLTILEKDLVQQMDHLEKDIAHEKETLEYLKLAEEE 881
Cdd:PRK03918 390 EKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEE 430
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
610-1088 |
1.71e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 55.84 E-value: 1.71e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 610 ERQQREELEKLESKRKQIEEMEEKQrsdkAELVRMQQEVESQRKETEIVQLQIRKQEESLKRRSVHIESRLKDLLAEKEK 689
Cdd:PRK03918 216 LPELREELEKLEKEVKELEELKEEI----EELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEK 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 690 FEEERLREQQEIELQKKKQQ-EEIFARVKEELQRLQELnhKEKAEKMQifRELEKLKKEKDEqyikLESEKKRIEEQERE 768
Cdd:PRK03918 292 AEEYIKLSEFYEEYLDELREiEKRLSRLEEEINGIEER--IKELEEKE--ERLEELKKKLKE----LEKRLEELEERHEL 363
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 769 QVMLVAHLEEQLREKQVMIQLLKRGDVQRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKAqhsFIEFKK------- 841
Cdd:PRK03918 364 YEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKA---IEELKKakgkcpv 440
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 842 -------------------------KQLEQLTILEKDLVQQMDHLEKDIAHEKETLEYLKLAEE--------EHVNLKKD 888
Cdd:PRK03918 441 cgrelteehrkelleeytaelkrieKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQlkeleeklKKYNLEEL 520
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 889 DENFGDAVFKAEEFDMVKLTEYRLQSKVRQLEYLKNNhLPALLEEKQRATEVLDRGLLGLDNTLYQIEKEIEDKEEQLAQ 968
Cdd:PRK03918 521 EKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKK-LAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEP 599
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 969 Y-------RASTNQLQQLQETFEFTANVARQEEKVRKKEKEILQSREKQQREAL----EQAVAKLERRHSALQRrstidf 1037
Cdd:PRK03918 600 FyneylelKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEkkysEEEYEELREEYLELSR------ 673
|
490 500 510 520 530
....*....|....*....|....*....|....*....|....*....|....*..
gi 2024393550 1038 EIEEQKQKLATLNNSCSEQAGLQASLEAEQKALEQDRERLD------QEIQQLKQKI 1088
Cdd:PRK03918 674 ELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEklekalERVEELREKV 730
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
606-888 |
1.80e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.84 E-value: 1.80e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 606 RLEFERQQREELEKLESKRKQIEEMEEKQRsdKAELVRMQQEVESQRKETEIVQLQIRKQEESLKRRSVHIESRLKDLLA 685
Cdd:TIGR02169 202 RLRREREKAERYQALLKEKREYEGYELLKE--KEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNK 279
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 686 EKEKfeeerLREQQEIELQKK--------KQQEEIFARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQYIKLES 757
Cdd:TIGR02169 280 KIKD-----LGEEEQLRVKEKigeleaeiASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDK 354
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 758 EKKRIEEQEREQVMLVAHLEEQLREKQVMIQLLKRgDVQRVEEEKRDLEDIRESLLKVKEaRSEGEENCEELEKAQHSFI 837
Cdd:TIGR02169 355 LTEEYAELKEELEDLRAELEEVDKEFAETRDELKD-YREKLEKLKREINELKRELDRLQE-ELQRLSEELADLNAAIAGI 432
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2024393550 838 EFKKKQLEQltilEKDLVQqmDHLEKDIAHEKETLEYLKLAEEEHVNLKKD 888
Cdd:TIGR02169 433 EAKINELEE----EKEDKA--LEIKKQEWKLEQLAADLSKYEQELYDLKEE 477
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1007-1108 |
2.52e-07 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 55.31 E-value: 2.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 1007 REKQQREALEQAVAKLERRHSALQRRSTID-----FEIEEQKQKLATLNNSCSEQAGLQASLEAEQKALEQDRERLDQEI 1081
Cdd:COG4913 246 DAREQIELLEPIRELAERYAAARERLAELEylraaLRLWFAQRRLELLEAELEELRAELARLEAELERLEARLDALREEL 325
|
90 100
....*....|....*....|....*..
gi 2024393550 1082 QQLKQKIYESDGGQKGNhgmLEEKLSH 1108
Cdd:COG4913 326 DELEAQIRGNGGDRLEQ---LEREIER 349
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
607-920 |
2.55e-07 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 55.46 E-value: 2.55e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 607 LEFERQQREELEK-LESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQLQIRKQEESL---KRRSVHIESRLKD 682
Cdd:TIGR02169 690 LSSLQSELRRIENrLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIenvKSELKELEARIEE 769
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 683 LLAEKEKFEEERLREQQEIELQKKKQQEEIFARVKEELQRLQE-LNHKEKAEKMQIFRE--LEKLKKEKDEQYIKLE--- 756
Cdd:TIGR02169 770 LEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEArLREIEQKLNRLTLEKeyLEKEIQELQEQRIDLKeqi 849
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 757 -SEKKRIEEQEREqvmlVAHLEEQLREKQVMIQLLkrgdvqrvEEEKRDLE-DIRESLLKVKEARSEGEENCEElekaqh 834
Cdd:TIGR02169 850 kSIEKEIENLNGK----KEELEEELEELEAALRDL--------ESRLGDLKkERDELEAQLRELERKIEELEAQ------ 911
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 835 sfIEFKKKQLEQLTILEKDLVQQMDHLEKDIAHEKETLEYLKLAEEEHVNLKK---DDENFGDAVFKA-EEFDMVKLTEY 910
Cdd:TIGR02169 912 --IEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRveeEIRALEPVNMLAiQEYEEVLKRLD 989
|
330
....*....|
gi 2024393550 911 RLQSKVRQLE 920
Cdd:TIGR02169 990 ELKEKRAKLE 999
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
651-984 |
2.60e-07 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 55.45 E-value: 2.60e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 651 QRKETEivqLQIRKQEESLKRrsvhiesrLKDLLAEKEKFEEErlreqqeieLQKKKQQEEIFARVKEEL---------Q 721
Cdd:TIGR02168 173 RRKETE---RKLERTRENLDR--------LEDILNELERQLKS---------LERQAEKAERYKELKAELrelelallvL 232
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 722 RLQELNHK------EKAEKMQIFRELEKLKKEKDEQYIKLESEK---------------------KRIEEQEREQVMLVA 774
Cdd:TIGR02168 233 RLEELREEleelqeELKEAEEELEELTAELQELEEKLEELRLEVseleeeieelqkelyalaneiSRLEQQKQILRERLA 312
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 775 HLEEQLREKQVMIQLLKRgDVQRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKAQHSFIEFKKKQLEQLTILEKDL 854
Cdd:TIGR02168 313 NLERQLEELEAQLEELES-KLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 855 VQQMDHLEKDIAHEKETLEYLKlaeeehVNLKKDDENFGDAVFKAEEFDMVKLTEyrlqskvrQLEYLKnnhlpALLEEK 934
Cdd:TIGR02168 392 ELQIASLNNEIERLEARLERLE------DRRERLQQEIEELLKKLEEAELKELQA--------ELEELE-----EELEEL 452
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|
gi 2024393550 935 QRATEVLDRGLLGLDNTLYQIEKEIEDKEEQLAQYRASTNQLQQLQETFE 984
Cdd:TIGR02168 453 QEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLE 502
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
612-820 |
2.61e-07 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 54.38 E-value: 2.61e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 612 QQREELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQLQIRKQEESLKRrsvhIESRLKDLLAEKEKFE 691
Cdd:COG4942 21 AAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAA----LEAELAELEKEIAELR 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 692 EERLREQQEIE-----LQKKKQQEEI------------------FARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEK 748
Cdd:COG4942 97 AELEAQKEELAellraLYRLGRQPPLalllspedfldavrrlqyLKYLAPARREQAEELRADLAELAALRAELEAERAEL 176
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024393550 749 DEQYIKLESEKKRIEEQEREQVMLVAHLEEQLREKQVMIQLLKRgdvqrveeEKRDLEDIRESLLKVKEARS 820
Cdd:COG4942 177 EALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQ--------EAEELEALIARLEAEAAAAA 240
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
610-785 |
6.65e-07 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 52.91 E-value: 6.65e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 610 ERQQREELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQLQIRKQEESLKRR--------------SVH 675
Cdd:COG3883 29 QAELEAAQAELDALQAELEELNEEYNELQAELEALQAEIDKLQAEIAEAEAEIEERREELGERaralyrsggsvsylDVL 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 676 IESR-LKDLLAEKEKFEEERLREQQEIELQKKKQQ--EEIFARVKEELQRLQELnhKEKAEKMQifRELEKLKKEKDEQY 752
Cdd:COG3883 109 LGSEsFSDFLDRLSALSKIADADADLLEELKADKAelEAKKAELEAKLAELEAL--KAELEAAK--AELEAQQAEQEALL 184
|
170 180 190
....*....|....*....|....*....|...
gi 2024393550 753 IKLESEKKRIEEQEREQVMLVAHLEEQLREKQV 785
Cdd:COG3883 185 AQLSAEEAAAEAQLAELEAELAAAEAAAAAAAA 217
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
702-924 |
7.07e-07 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 53.91 E-value: 7.07e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 702 ELQKKKQQEEIFARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQYIKLESEKKRIEEqereqvmlvahLEEQLR 781
Cdd:PRK03918 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEE-----------LKEEIE 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 782 EKQVMIQLLkRGDVQRVEEEKRDLED-IRESLLKVKEARSEGEENCEELEKAQH--SFIEFKKKQLEQLTILEKDL---- 854
Cdd:PRK03918 242 ELEKELESL-EGSKRKLEEKIRELEErIEELKKEIEELEEKVKELKELKEKAEEyiKLSEFYEEYLDELREIEKRLsrle 320
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024393550 855 ------VQQMDHLEKDIAHEKETLEYLKLAEEEHVNLKKDDENFGDAVFKAEEFDMVK--LTEYRLQSKVRQLEYLKN 924
Cdd:PRK03918 321 eeingiEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKkrLTGLTPEKLEKELEELEK 398
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
702-1087 |
1.15e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 53.02 E-value: 1.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 702 ELQKKKQQEEIFARV------KEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQYIKLESEKKRIEE---QEREQVML 772
Cdd:COG1196 217 ELKEELKELEAELLLlklrelEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEaqaEEYELLAE 296
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 773 VAHLEEQLREKQVMIQLLKRGDVQRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKAQHSFIEFKKKQLEQLTILEK 852
Cdd:COG1196 297 LARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAE 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 853 DLVQQMDHLEKDIAHEKETLEYLKLAEEEhvnlkkddenfgdavfkaeefdmvkltEYRLQSKVRQLEylknnhlpALLE 932
Cdd:COG1196 377 AEEELEELAEELLEALRAAAELAAQLEEL---------------------------EEAEEALLERLE--------RLEE 421
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 933 EKQRATEVLDRGLLGLDNTLYQIEKEIEDKEEQLAQYRASTNQLQQLQETFEFTANVARQEEKVRKKEKEILQSREKQQR 1012
Cdd:COG1196 422 ELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024393550 1013 EALEQAVAKLERRHSALQRRSTIDFEIEEQKQKLAtlnnscsEQAGLQASLEAEQKALEQDRERLDQEIQQLKQK 1087
Cdd:COG1196 502 DYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAY-------EAALEAALAAALQNIVVEDDEVAAAAIEYLKAA 569
|
|
| FHA_RADIL-like |
cd22712 |
forkhead associated (FHA) domain found in the Ras-associating and dilute domain-containing ... |
451-554 |
1.86e-06 |
|
forkhead associated (FHA) domain found in the Ras-associating and dilute domain-containing protein (Radil)-like family; The Radil-like family includes Radil and Ras-interacting protein 1 (Rain). Radil acts as an important small GTPase Rap1 effector required for cell spreading and migration. It regulates neutrophil adhesion and motility by linking Rap1 to beta2-integrin activation. Rain, also called Rasip1, is an endothelial-specific Ras-interacting protein required for the proper formation of vascular structures that develop via both vasculogenesis and angiogenesis. It acts as a critical and vascular-specific regulator of GTPase signaling, cell architecture, and adhesion, which is essential for endothelial cell morphogenesis and blood vessel tubulogenesis. Rain interacts with Ras in a GTP-dependent manner and may serve as an effector for endomembrane-associated Ras. Both Radil and Rain contain an FHA domain. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.
Pssm-ID: 438764 [Multi-domain] Cd Length: 120 Bit Score: 48.07 E-value: 1.86e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 451 SELPHLIGI-----DDDLLstgiiLYHLKEGQTYVGREDAMTEQ-DIVLHGLDLESEHCIFEN---------------LN 509
Cdd:cd22712 1 SDYPYLLTLrgfspKQDLL-----VYPLLEQVILVGSRTEGARKvDISLRAPDILPQHCWIRRkpeplsddedsdkesAD 75
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2024393550 510 GTVNLIPLNGAQCSVNGIQITEATHLNQGAVILLGRTNMFRFNHP 554
Cdd:cd22712 76 YRVVLSPLRGAHVTVNGVPVLSETELHPGDLLGIGEHYLFLFKDP 120
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
600-920 |
2.13e-06 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 51.99 E-value: 2.13e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 600 KGPICLRlEFERQQREEL-----EKLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQL--QIRKQEESLKrr 672
Cdd:PRK03918 437 KCPVCGR-ELTEEHRKELleeytAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELaeQLKELEEKLK-- 513
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 673 svhiESRLKDLLAEKEKFeeeRLREQQEIELQKKkqqeeiFARVKEELQRLQELnhkeKAEKMQIFRELEKLKKEKDEQY 752
Cdd:PRK03918 514 ----KYNLEELEKKAEEY---EKLKEKLIKLKGE------IKSLKKELEKLEEL----KKKLAELEKKLDELEEELAELL 576
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 753 IKLESEK-KRIEEQEREQVMLVAHLEEQLREKQVMIQLlkRGDVQRVEEEKRDLEDIRESLLKVkEARSEGEENCEELEK 831
Cdd:PRK03918 577 KELEELGfESVEELEERLKELEPFYNEYLELKDAEKEL--EREEKELKKLEEELDKAFEELAET-EKRLEELRKELEELE 653
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 832 AQHSFIEFKKKQlEQLTILEKDLV---QQMDHLEKDIAHEKETLEYLKLAEEEHVNLKKDDENFGDAVFKAEEFdMVKLT 908
Cdd:PRK03918 654 KKYSEEEYEELR-EEYLELSRELAglrAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEEL-REKVK 731
|
330
....*....|..
gi 2024393550 909 EYRLQSKVRQLE 920
Cdd:PRK03918 732 KYKALLKERALS 743
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
844-1092 |
2.51e-06 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 51.98 E-value: 2.51e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 844 LEQLTILEKDLVQQMDHLEKdiaHEKETLEYLKL-AEEEHVNLkkdDENFGDAVFKAEEFDMVKLTEYRLQSKVRQLEYL 922
Cdd:TIGR02168 188 LDRLEDILNELERQLKSLER---QAEKAERYKELkAELRELEL---ALLVLRLEELREELEELQEELKEAEEELEELTAE 261
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 923 KNNhLPALLEEKQRATEVLDRGLLGLDNTLYQIEKEIEDKEEQLAQYRASTNQLQQLQETFEFTANVARQEEKVRKKEKE 1002
Cdd:TIGR02168 262 LQE-LEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 1003 ILQSREKQQREALEQAVAKLERRHSALQ----RRSTIDFEIEEQKQKLATLNNSCSEQAGLQASLEAEQKALEQDRERLD 1078
Cdd:TIGR02168 341 ELEEKLEELKEELESLEAELEELEAELEelesRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQ 420
|
250
....*....|....
gi 2024393550 1079 QEIQQLKQKIYESD 1092
Cdd:TIGR02168 421 QEIEELLKKLEEAE 434
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
610-936 |
2.54e-06 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 51.90 E-value: 2.54e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 610 ERQQREELEKLESKRKQIEEMEEKQRSDKAELVRMQQE-VESQRKETEIVQLQIRKQEESLKRRSVHIESRLKDLLAEKE 688
Cdd:pfam02463 700 EIKKKEQREKEELKKLKLEAEELLADRVQEAQDKINEElKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEE 779
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 689 KFEEERLREQQEIELQKKKQQEEIFARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQYIKLESEKKRIEEQERE 768
Cdd:pfam02463 780 REKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERL 859
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 769 QVMLVahLEEQLREKQVMIQLLKRGDVQRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKAQHSFIefKKKQLEQLT 848
Cdd:pfam02463 860 EEEIT--KEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEE--AEILLKYEE 935
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 849 ILEKDLVQQMDHLEKDIAHEKETLEYLKLAEEEHVNLKKDDENfgdavfKAEEFDMVKLTEYRLQSKVRQLEYLKNNHLP 928
Cdd:pfam02463 936 EPEELLLEEADEKEKEENNKEEEEERNKRLLLAKEELGKVNLM------AIEEFEEKEERYNKDELEKERLEEEKKKLIR 1009
|
....*...
gi 2024393550 929 ALLEEKQR 936
Cdd:pfam02463 1010 AIIEETCQ 1017
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
612-1084 |
3.17e-06 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 51.51 E-value: 3.17e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 612 QQREELEKLESKRKQIEEMEEK--QRSDKAELVRMQQEVESQRKETEIVQLQIRKQEESLKRRSVHIESRLKDLLAEKEK 689
Cdd:TIGR00618 264 QLRARIEELRAQEAVLEETQERinRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQ 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 690 FEEERLREQQEIELQKKKQQE----EIFARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQY------------- 752
Cdd:TIGR00618 344 RRLLQTLHSQEIHIRDAHEVAtsirEISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQAtidtrtsafrdlq 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 753 IKLESEKKRIEEQEREQVMLVAHLEEQLREKQVMIQLLKRGdVQRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKA 832
Cdd:TIGR00618 424 GQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQES-AQSLKEREQQLQTKEQIHLQETRKKAVVLARLLELQEE 502
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 833 QHSFIE---FKKKQLEQLTILEKD--LVQQMDHLEKDIAHEKETLEYLKLAEEEHVNLKKDDENFGDAVFKAEEFDMVKL 907
Cdd:TIGR00618 503 PCPLCGsciHPNPARQDIDNPGPLtrRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRS 582
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 908 TEyrLQSKVRQLEYLKNNHLPALLEEKQRATEVLDRGLLGL----DNTLYQIEKEIEDKEEQLAQYRASTNQLQQLQETF 983
Cdd:TIGR00618 583 KE--DIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLqpeqDLQDVRLHLQQCSQELALKLTALHALQLTLTQERV 660
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 984 EFTANVARQEEKVRKKEKEILQSREKQQREALEQAVAKLERRHSALQRRSTIDFEIEEQKQKLAtlNNSCSEQAGLQASL 1063
Cdd:TIGR00618 661 REHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFNEIE--NASSSLGSDLAARE 738
|
490 500
....*....|....*....|.
gi 2024393550 1064 EAEQKALEQDRERLDQEIQQL 1084
Cdd:TIGR00618 739 DALNQSLKELMHQARTVLKAR 759
|
|
| PRK02224 |
PRK02224 |
DNA double-strand break repair Rad50 ATPase; |
605-1090 |
5.37e-06 |
|
DNA double-strand break repair Rad50 ATPase;
Pssm-ID: 179385 [Multi-domain] Cd Length: 880 Bit Score: 50.81 E-value: 5.37e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 605 LRLEFERQQREELEKLESkrkQIEEMEEKQRSDKAELVRMQQEVESQRKETEivqlqirkqeeslkrrsvHIESRLKDLL 684
Cdd:PRK02224 241 EVLEEHEERREELETLEA---EIEDLRETIAETEREREELAEEVRDLRERLE------------------ELEEERDDLL 299
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 685 AEKEKFEEERLREQQEIE-LQKKKqqEEIFARVKEELQRLQELNHKEKAEKMQIfRELEKLKKEKDEQYIKLESEKKRIE 763
Cdd:PRK02224 300 AEAGLDDADAEAVEARREeLEDRD--EELRDRLEECRVAAQAHNEEAESLREDA-DDLEERAEELREEAAELESELEEAR 376
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 764 EQEREQVMLVAHLEEQLREkqvmiqllKRGDVQRVEEEKRDLEDIRESLLKVKEARSegeenceelekaqhsfiefkkkq 843
Cdd:PRK02224 377 EAVEDRREEIEELEEEIEE--------LRERFGDAPVDLGNAEDFLEELREERDELR----------------------- 425
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 844 lEQLTILEKDLvqqmDHLEKDIAHEKETLEYLK-------LAEEEHVNLKKDDEnfgDAVFK-AEEFDMVKLTEYRLQSK 915
Cdd:PRK02224 426 -EREAELEATL----RTARERVEEAEALLEAGKcpecgqpVEGSPHVETIEEDR---ERVEElEAELEDLEEEVEEVEER 497
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 916 VRQLEYLKN--NHLPALLEEKQRATEVLDrgllgldntlyQIEKEIEDKEEQLAQYRASTNQLQQLQETFEFTANVARQE 993
Cdd:PRK02224 498 LERAEDLVEaeDRIERLEERREDLEELIA-----------ERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEE 566
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 994 EKVRKKEKEILQSRekqqREALEQAVAKLERRHSALQRRSTIDFEIE---EQKQKLATLNNSCSEQ--------AGLQAS 1062
Cdd:PRK02224 567 AEEAREEVAELNSK----LAELKERIESLERIRTLLAAIADAEDEIErlrEKREALAELNDERRERlaekrerkRELEAE 642
|
490 500
....*....|....*....|....*....
gi 2024393550 1063 LEAEQ-KALEQDRERLDQEIQQLKQKIYE 1090
Cdd:PRK02224 643 FDEARiEEAREDKERAEEYLEQVEEKLDE 671
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
796-1090 |
6.32e-06 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 50.71 E-value: 6.32e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 796 QRVEEEKRDLEDIRESLLKV---------------------KEARSEGEENCEELEKAQHSFIEFKKKQLEQLTILEKDL 854
Cdd:COG1196 172 ERKEEAERKLEATEENLERLedilgelerqleplerqaekaERYRELKEELKELEAELLLLKLRELEAELEELEAELEEL 251
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 855 VQQMDHLEKDIAHEKETLEYLKLAEEEhvnlkkddenfgdavfKAEEFDMVKLTEYRLQSKVRQLEYLKNnhlpALLEEK 934
Cdd:COG1196 252 EAELEELEAELAELEAELEELRLELEE----------------LELELEEAQAEEYELLAELARLEQDIA----RLEERR 311
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 935 QRATEVLDRGLLGLDNTLYQIEKEIEDKEEQLAQYRASTNQLQQLQETFEFTANVARQEEKVRKKEKEILQSREKQQREA 1014
Cdd:COG1196 312 RELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEA 391
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024393550 1015 LEQAVAKLERRHSALQRRSTIDFEIEEQKQKLATLNNSCSEQAGLQASLEAEQKALEQDRERLDQEIQQLKQKIYE 1090
Cdd:COG1196 392 LRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEEEEALLELLAE 467
|
|
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
702-1088 |
7.19e-06 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 50.15 E-value: 7.19e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 702 ELQKKKQQEEIFARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKD--EQYIKLESEKKRIEEQEREQVMLVAHLEEq 779
Cdd:COG4717 79 ELKEAEEKEEEYAELQEELEELEEELEELEAELEELREELEKLEKLLQllPLYQELEALEAELAELPERLEELEERLEE- 157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 780 LREKQVMIQLLKrgdvQRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKAQHSFIEfkkKQLEQLTILEKDLVQQMD 859
Cdd:COG4717 158 LRELEEELEELE----AELAELQEELEELLEQLSLATEEELQDLAEELEELQQRLAELE---EELEEAQEELEELEEELE 230
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 860 HLEKD--IAHEKETLEYLK----------LAEEEHVNLKKDDENFGDAVFKAEEFDMVKLTEYRLQSKVRQLEYLKNNHL 927
Cdd:COG4717 231 QLENEleAAALEERLKEARlllliaaallALLGLGGSLLSLILTIAGVLFLVLGLLALLFLLLAREKASLGKEAEELQAL 310
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 928 PALLE-EKQRATEVLDRglLGLDNTLyqIEKEIEDKEEQLAQYRASTNQLQQLQEtfeftanvARQEEKVRKKEKEILQS 1006
Cdd:COG4717 311 PALEElEEEELEELLAA--LGLPPDL--SPEELLELLDRIEELQELLREAEELEE--------ELQLEELEQEIAALLAE 378
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 1007 REKQQREALEQAVAKLERRHSALQRRSTIDFEIEEQKQKLATLNNSCSEQAGLQ--ASLEAEQKALEQDRERLDQEIQQL 1084
Cdd:COG4717 379 AGVEDEEELRAALEQAEEYQELKEELEELEEQLEELLGELEELLEALDEEELEEelEELEEELEELEEELEELREELAEL 458
|
....
gi 2024393550 1085 KQKI 1088
Cdd:COG4717 459 EAEL 462
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
608-819 |
7.81e-06 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 49.95 E-value: 7.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 608 EFERQQREELEKLESKRKQIEEMEEKQRSDKAELVRMqqEVESQRKETEivqLQIRKQEESLKRRSvhiesrlkdllAEK 687
Cdd:pfam15709 312 EEERSEEDPSKALLEKREQEKASRDRLRAERAEMRRL--EVERKRREQE---EQRRLQQEQLERAE-----------KMR 375
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 688 EKFEEERLREQQEIELQKKKQQEEIFARVKEEL-QRLQELNHKEKAEKMQ--IFRELEKLKKEKDEQyiklesEKKRIEE 764
Cdd:pfam15709 376 EELELEQQRRFEEIRLRKQRLEEERQRQEEEERkQRLQLQAAQERARQQQeeFRRKLQELQRKKQQE------EAERAEA 449
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2024393550 765 QEREQvmlvAHLEEQLREKQVmiQLLKRGDVQRVEEEKRDLEDIRESLLKVKEAR 819
Cdd:pfam15709 450 EKQRQ----KELEMQLAEEQK--RLMEMAEEERLEYQRQKQEAEEKARLEAEERR 498
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
662-1009 |
1.07e-05 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 50.06 E-value: 1.07e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 662 IRKQEESLKRRSVHIEsRLKDLLAEKEKFEEERLREQQEIELQKKKQQEEIFARVKEELQRLQ-ELNHKEKA--EKMQIF 738
Cdd:TIGR02168 198 LERQLKSLERQAEKAE-RYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTaELQELEEKleELRLEV 276
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 739 RELEKLKKEKDEQYIKLESEKKRIEEQEREQVMLVAHLEEQLREKQVMIQLLKRgDVQRVEEEKRDLEDIRESLLKVKEA 818
Cdd:TIGR02168 277 SELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELES-KLDELAEELAELEEKLEELKEELES 355
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 819 RSEGEENCEELEKAQHSFIEFKKKQLEQLTILEKDLVQQMDHLEKDIAHEKETLEYLKlaeeehVNLKKDDENFGDAVFK 898
Cdd:TIGR02168 356 LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLE------DRRERLQQEIEELLKK 429
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 899 AEEFDMvKLTEYRLQSKVRQLEYLKnnhlpALLEEKQRATEVLDRGLLGLDNTLYQIEkeiedkeeqlaqyrastNQLQQ 978
Cdd:TIGR02168 430 LEEAEL-KELQAELEELEEELEELQ-----EELERLEEALEELREELEEAEQALDAAE-----------------RELAQ 486
|
330 340 350
....*....|....*....|....*....|.
gi 2024393550 979 LQETFEFTANVARQEEKVRKKEKEILQSREK 1009
Cdd:TIGR02168 487 LQARLDSLERLQENLEGFSEGVKALLKNQSG 517
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
608-940 |
1.08e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 50.14 E-value: 1.08e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 608 EFERQQRE---------------------ELEKLESKRKQIEEMEEKQRSDKAELVRMQQEV----ESQRKETEIVQLQI 662
Cdd:PTZ00121 1078 DFDFDAKEdnradeateeafgkaeeakktETGKAEEARKAEEAKKKAEDARKAEEARKAEDArkaeEARKAEDAKRVEIA 1157
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 663 RKQEESlkrRSVHIESRLKDllAEKEKFEEERLREQQEIELQKKKQQEEI-FARVKEELQRLQELNHKEKAEKMQIFREL 741
Cdd:PTZ00121 1158 RKAEDA---RKAEEARKAED--AKKAEAARKAEEVRKAEELRKAEDARKAeAARKAEEERKAEEARKAEDAKKAEAVKKA 1232
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 742 EKLKKeKDEQYIKLESEKKRIEEQEREQVMLVAHLEEQL----------------REKQVMIQLLKRGDVQRVEEEKRDL 805
Cdd:PTZ00121 1233 EEAKK-DAEEAKKAEEERNNEEIRKFEEARMAHFARRQAaikaeearkadelkkaEEKKKADEAKKAEEKKKADEAKKKA 1311
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 806 EDIRESLLKVKEARSEGEENCEELEKAQHS--FIEFKKKQLEQLTILEKDLVQQMDHLEKDIAHEKETLEYLKLAEEEhv 883
Cdd:PTZ00121 1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAkkAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEE-- 1389
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 2024393550 884 nLKKDDEnfgdAVFKAEEfDMVKLTEYRLQSKVRQleylKNNHLPALLEEKQRATEV 940
Cdd:PTZ00121 1390 -KKKADE----AKKKAEE-DKKKADELKKAAAAKK----KADEAKKKAEEKKKADEA 1436
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
610-1049 |
1.15e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 49.97 E-value: 1.15e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 610 ERQQREELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVEsQRKETEIVQLQIRKQEESLKRRSVHIESRLKDLLAEKEK 689
Cdd:TIGR00618 430 KKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLK-EREQQLQTKEQIHLQETRKKAVVLARLLELQEEPCPLCG 508
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 690 FEEERLREQQEIELQKKKQQ--EEIFARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQYI---KLESEKKRIEE 764
Cdd:TIGR00618 509 SCIHPNPARQDIDNPGPLTRrmQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSIltqCDNRSKEDIPN 588
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 765 QEREQVMLVAHLEEQLREKQVMIQLLKRGDVQRveEEKRDLEDIRESL------LKVKEARSEGEENCEELEKAQHSFIE 838
Cdd:TIGR00618 589 LQNITVRLQDLTEKLSEAEDMLACEQHALLRKL--QPEQDLQDVRLHLqqcsqeLALKLTALHALQLTLTQERVREHALS 666
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 839 FKKKQLEQLTILEKDLvQQMDHLEKDIAHEKETLEY-LKLAEEEHVNLKKDDEnfgdavfkaeEFDMVKLTEYRLQSKVR 917
Cdd:TIGR00618 667 IRVLPKELLASRQLAL-QKMQSEKEQLTYWKEMLAQcQTLLRELETHIEEYDR----------EFNEIENASSSLGSDLA 735
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 918 QLEYLKNNHLPALLEEKQRAtevldrgLLGLDNTLYQIEKEIEDKEEQLAQY----RASTNQLQQLQETFEFTANVARQE 993
Cdd:TIGR00618 736 AREDALNQSLKELMHQARTV-------LKARTEAHFNNNEEVTAALQTGAELshlaAEIQFFNRLREEDTHLLKTLEAEI 808
|
410 420 430 440 450
....*....|....*....|....*....|....*....|....*....|....*.
gi 2024393550 994 EKVRKKEKEILQSREKQQREALEQAVAKLERRHSALQRRSTIDFEIEEQKQKLATL 1049
Cdd:TIGR00618 809 GQEIPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITHQLLKYEECSKQLAQL 864
|
|
| FHA |
COG1716 |
Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms]; |
471-551 |
1.41e-05 |
|
Forkhead associated (FHA) domain, binds pSer, pThr, pTyr [Signal transduction mechanisms];
Pssm-ID: 441322 [Multi-domain] Cd Length: 96 Bit Score: 44.95 E-value: 1.41e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 471 YHLKEGQTYVGREDamtEQDIVLHGLDLESEHCIFENLNGTVNLIPL---NGAQcsVNGIQITEATHLNQGAVILLGRTn 547
Cdd:COG1716 16 FPLDGGPLTIGRAP---DNDIVLDDPTVSRRHARIRRDGGGWVLEDLgstNGTF--VNGQRVTEPAPLRDGDVIRLGKT- 89
|
....
gi 2024393550 548 MFRF 551
Cdd:COG1716 90 ELRF 93
|
|
| PRK03918 |
PRK03918 |
DNA double-strand break repair ATPase Rad50; |
605-949 |
1.45e-05 |
|
DNA double-strand break repair ATPase Rad50;
Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 49.29 E-value: 1.45e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 605 LRLEFERQQREELEK----LESKRKQIEEMEEKQRSDKAELVRMQqevESQRKETEIVQLQIRKQEESLKRRSVHIEsRL 680
Cdd:PRK03918 314 KRLSRLEEEINGIEErikeLEEKEERLEELKKKLKELEKRLEELE---ERHELYEEAKAKKEELERLKKRLTGLTPE-KL 389
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 681 KDLLAEKEKFEEERLREQQEIElQKKKQQEEIFARVKEELQRLQ-----------ELNHKEKAEKMQIF-RELEKLKKEK 748
Cdd:PRK03918 390 EKELEELEKAKEEIEEEISKIT-ARIGELKKEIKELKKAIEELKkakgkcpvcgrELTEEHRKELLEEYtAELKRIEKEL 468
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 749 deqyIKLESEKKRIEEQEREQVMLVAHLEEQLREKQVMIQL------LKRGDVQRVEEEKRDLEDIRESLLKVK-EARSE 821
Cdd:PRK03918 469 ----KEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLkeleekLKKYNLEELEKKAEEYEKLKEKLIKLKgEIKSL 544
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 822 GEENCEELE-KAQHSFIEFKKKQLEQ-----LTILEKDLVQQMDHLEKDIAH-EKETLEYLKL--AEEEHVNLKKDDENF 892
Cdd:PRK03918 545 KKELEKLEElKKKLAELEKKLDELEEelaelLKELEELGFESVEELEERLKElEPFYNEYLELkdAEKELEREEKELKKL 624
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*..
gi 2024393550 893 GDAVFKAEEfdMVKLTEYRLQSKVRQLEYLKNNHLPALLEEKQRATEVLDRGLLGLD 949
Cdd:PRK03918 625 EEELDKAFE--ELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLR 679
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
723-1087 |
1.49e-05 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 49.35 E-value: 1.49e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 723 LQELNHKEKAEKMqifrELEKLKKEKDEQYIKLESEKKRIEEQEREQVMLVAHLEEQLREKQVMIQLLKRGDVQRVEEEK 802
Cdd:pfam17380 284 VSERQQQEKFEKM----EQERLRQEKEEKAREVERRRKLEEAEKARQAEMDRQAAIYAEQERMAMERERELERIRQEERK 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 803 RDLEDIRESLLKVKEARSEgeenceelekaqhsfiEFKKKQLEQLTILEKdLVQQMDHLEKDIAHEKETLEYLKLAEEEH 882
Cdd:pfam17380 360 RELERIRQEEIAMEISRMR----------------ELERLQMERQQKNER-VRQELEAARKVKILEEERQRKIQQQKVEM 422
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 883 VNLKKDDENfgdavfkAEEFDMVKLTEYRlqskVRQLEYLKNNHLpalleEKQRATEVLDRgllgldNTLYQIEKEIEDK 962
Cdd:pfam17380 423 EQIRAEQEE-------ARQREVRRLEEER----AREMERVRLEEQ-----ERQQQVERLRQ------QEEERKRKKLELE 480
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 963 EEQLAQYRASTNQLQQLQETFEftanvARQEEKVRKKEKEILQSREKQQREaleQAVAKLERRHSALQRRSTiDFEIEEQ 1042
Cdd:pfam17380 481 KEKRDRKRAEEQRRKILEKELE-----ERKQAMIEEERKRKLLEKEMEERQ---KAIYEEERRREAEEERRK-QQEMEER 551
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 2024393550 1043 KQKLATLNNSCSEQAGLQAsleaeqkaLEQDRERLDQEIQQLKQK 1087
Cdd:pfam17380 552 RRIQEQMRKATEERSRLEA--------MEREREMMRQIVESEKAR 588
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
616-888 |
2.04e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.95 E-value: 2.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 616 ELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQLQIRKQE--------------ESLKRRSVHIESRLK 681
Cdd:pfam05483 416 EDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEehylkevedlktelEKEKLKNIELTAHCD 495
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 682 DLLAEKEKFEEERLReqqeIELQKKKQQEEIFARVKEELQRLQELNHKEKAEkMQIFRELEKLKKEKDEQYIKLESEKKR 761
Cdd:pfam05483 496 KLLLENKELTQEASD----MTLELKKHQEDIINCKKQEERMLKQIENLEEKE-MNLRDELESVREEFIQKGDEVKCKLDK 570
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 762 IEEQEREQVMLVAHLEEQLREKQVMIQLLKRgdvqRVEEEKRDLEDIRESLLKVKEARSEGEEnceelekaQHSFIEFKK 841
Cdd:pfam05483 571 SEENARSIEYEVLKKEKQMKILENKCNNLKK----QIENKNKNIEELHQENKALKKKGSAENK--------QLNAYEIKV 638
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 2024393550 842 KQLE-QLTILEKDLVQQMDHLEKDIAHEK-------ETLEYLKLAEEEHVNLKKD 888
Cdd:pfam05483 639 NKLElELASAKQKFEEIIDNYQKEIEDKKiseekllEEVEKAKAIADEAVKLQKE 693
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
615-1088 |
2.12e-05 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 48.96 E-value: 2.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 615 EELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVE----------------SQRKETEIVQLQIRKQEESLKRRSVHIES 678
Cdd:pfam15921 245 DQLEALKSESQNKIELLLQQHQDRIEQLISEHEVEitgltekassarsqanSIQSQLEIIQEQARNQNSMYMRQLSDLES 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 679 RLKDLLAEKEKFEEERLREQQEIELQKKKQQEEIFARVKEELQRLQELNHKEKaEKMQIFRELEKLKKEkdeqyIKLESE 758
Cdd:pfam15921 325 TVSQLRSELREAKRMYEDKIEELEKQLVLANSELTEARTERDQFSQESGNLDD-QLQKLLADLHKREKE-----LSLEKE 398
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 759 K-KRIEEQEREQVMLVAHLEEQLREKQVMIQLLkrgdvqrveeekrdledirESLLKVKEARSegeencEELEKAQHSFI 837
Cdd:pfam15921 399 QnKRLWDRDTGNSITIDHLRRELDDRNMEVQRL-------------------EALLKAMKSEC------QGQMERQMAAI 453
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 838 EFKKKQLEQLTILEKDLVQQMDHLEK---DIAHEKETLEylklAEEEHVNLKKDDENFGDAVFKAEEFDMVKLTEyRLQS 914
Cdd:pfam15921 454 QGKNESLEKVSSLTAQLESTKEMLRKvveELTAKKMTLE----SSERTVSDLTASLQEKERAIEATNAEITKLRS-RVDL 528
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 915 KVRQLEYLKN--NHlpalLEEKQRATEVLDRGLLGLDNTLYQIEKEIEDKEEQLAQYRASTNQLQQLQETFEFTANVARq 992
Cdd:pfam15921 529 KLQELQHLKNegDH----LRNVQTECEALKLQMAEKDKVIEILRQQIENMTQLVGQHGRTAGAMQVEKAQLEKEINDRR- 603
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 993 eekVRKKEKEILQSREKQQREALEQAVAKLERRHSAL------QRRSTIDFEiEEQKQKLATLNNSCSEQAGLQASLEAE 1066
Cdd:pfam15921 604 ---LELQEFKILKDKKDAKIRELEARVSDLELEKVKLvnagseRLRAVKDIK-QERDQLLNEVKTSRNELNSLSEDYEVL 679
|
490 500
....*....|....*....|..
gi 2024393550 1067 QKALEQDRERLDQEIQQLKQKI 1088
Cdd:pfam15921 680 KRNFRNKSEEMETTTNKLKMQL 701
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
606-1145 |
2.71e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 48.53 E-value: 2.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 606 RLEFERQQREEL--------EKLESKRKQIEEMEEKQRSDKAELVRMQQEVES-QRKETEIVQLQIRKQEESLKRRS--V 674
Cdd:TIGR02169 344 EIEEERKRRDKLteeyaelkEELEDLRAELEEVDKEFAETRDELKDYREKLEKlKREINELKRELDRLQEELQRLSEelA 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 675 HIESRLKDLLAEKEKFeeerlreqqeiELQKKKQQEEIfARVKEELQRLQELNHKEKAEKMQIFRELEKLKKE---KDEQ 751
Cdd:TIGR02169 424 DLNAAIAGIEAKINEL-----------EEEKEDKALEI-KKQEWKLEQLAADLSKYEQELYDLKEEYDRVEKElskLQRE 491
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 752 YIKLESEKKRIEEQEREQVM--------------LVAHLEEQLREKQVMIQLLKRGDVQR--VEEEKRDLEDI------- 808
Cdd:TIGR02169 492 LAEAEAQARASEERVRGGRAveevlkasiqgvhgTVAQLGSVGERYATAIEVAAGNRLNNvvVEDDAVAKEAIellkrrk 571
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 809 --RESLLKVKEARSEGEENCEELEKAQHSF----IEFKKK----------------QLE---------QLTILEKDLVQQ 857
Cdd:TIGR02169 572 agRATFLPLNKMRDERRDLSILSEDGVIGFavdlVEFDPKyepafkyvfgdtlvveDIEaarrlmgkyRMVTLEGELFEK 651
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 858 ----------MDHLEKDIAHEKETLEYLKLAEEEhvnLKKDDENFGDAVFKAEE-----FDMVKLTEYRLQSKVRQLEYL 922
Cdd:TIGR02169 652 sgamtggsraPRGGILFSRSEPAELQRLRERLEG---LKRELSSLQSELRRIENrldelSQELSDASRKIGEIEKEIEQL 728
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 923 KNNH--LPALLEEKQRATEVLDRGLLGLDNTLYQIEKEIEDKEEQLAQYRASTNQL---------QQLQETFEFTANVAR 991
Cdd:TIGR02169 729 EQEEekLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLearlshsriPEIQAELSKLEEEVS 808
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 992 QEEKVRKKEKEILQSREkQQREALEQAVAKLERRHSALQ-RRSTIDFEIEEQKQKLATLNNSCSEQAGLQASLEAEQKAL 1070
Cdd:TIGR02169 809 RIEARLREIEQKLNRLT-LEKEYLEKEIQELQEQRIDLKeQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDL 887
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 1071 EQDRERLDQEIQQLKQKIYE----------SDGGQKGNHGMLEEKLSHSNSPTNPTKPQPPSAPLVDDrinafIEQEVQR 1140
Cdd:TIGR02169 888 KKERDELEAQLRELERKIEEleaqiekkrkRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLED-----VQAELQR 962
|
....*
gi 2024393550 1141 RLQNI 1145
Cdd:TIGR02169 963 VEEEI 967
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
1009-1143 |
2.73e-05 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 48.76 E-value: 2.73e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 1009 KQQREALEQAVAKLERRHSALQRRSTIDF----------EIEEQKQKLATLNNSCSEQAGLQASLE---AEQKALEQDRE 1075
Cdd:COG4913 630 EERLEALEAELDALQERREALQRLAEYSWdeidvasaerEIAELEAELERLDASSDDLAALEEQLEeleAELEELEEELD 709
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024393550 1076 RLDQEIQQLKQKIYESDGGQKGNHGMLEEKlshsnsptnPTKPQPPSAPLVDDRINAFIEQEVQRRLQ 1143
Cdd:COG4913 710 ELKGEIGRLEKELEQAEEELDELQDRLEAA---------EDLARLELRALLEERFAAALGDAVERELR 768
|
|
| SCP-1 |
pfam05483 |
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major ... |
612-1105 |
3.04e-05 |
|
Synaptonemal complex protein 1 (SCP-1); Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase.
Pssm-ID: 114219 [Multi-domain] Cd Length: 787 Bit Score: 48.18 E-value: 3.04e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 612 QQREELEKLESKRK----QIEEMEEKQRSDKAEL----VRMQQEVESQRKETEIVQLQIR-----------KQEESLKRR 672
Cdd:pfam05483 265 ESRDKANQLEEKTKlqdeNLKELIEKKDHLTKELedikMSLQRSMSTQKALEEDLQIATKticqlteekeaQMEELNKAK 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 673 SVH---------IESRLKDLLAEKEKFEEERLREQQEIELQKKKQQEEIfarvkEELQRLQELNHKEKAEKMQIFRELEK 743
Cdd:pfam05483 345 AAHsfvvtefeaTTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSEL-----EEMTKFKNNKEVELEELKKILAEDEK 419
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 744 LKKEKdEQYIKLESEkkrIEEQEREQVMLVAHLEEQLREKQVMIQLLKRGD---VQRVEEEKRDLEDIR----------- 809
Cdd:pfam05483 420 LLDEK-KQFEKIAEE---LKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEehyLKEVEDLKTELEKEKlknieltahcd 495
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 810 ESLLKVKEARSEGEENCEELEKAQHSFIEFKKKqleqltilEKDLVQQMDHLEKDIAHEKETLEYLK-----LAEEEHVN 884
Cdd:pfam05483 496 KLLLENKELTQEASDMTLELKKHQEDIINCKKQ--------EERMLKQIENLEEKEMNLRDELESVReefiqKGDEVKCK 567
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 885 LKKDDENfgdavfkaeefdmVKLTEYRLQSKVRQLEYLKN--NHLPALLEEKQRATEVLDRGLLGLdntlyqiEKEIEDK 962
Cdd:pfam05483 568 LDKSEEN-------------ARSIEYEVLKKEKQMKILENkcNNLKKQIENKNKNIEELHQENKAL-------KKKGSAE 627
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 963 EEQLAQYRASTNQLQ-----QLQETFEFTANVARQEEKVRKKEKEILQSREKQ----------QREALEQAVAKLERRHS 1027
Cdd:pfam05483 628 NKQLNAYEIKVNKLElelasAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAkaiadeavklQKEIDKRCQHKIAEMVA 707
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024393550 1028 ALQR-RSTIDFEIEEQKQKLATLNNSCSEQAGLQASLEAEQKALEQDRERLDQEIQQLKQKIYESDGGQKGNHGMLEEK 1105
Cdd:pfam05483 708 LMEKhKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQLEIEKEEKEKLKMEAKENTAILKDK 786
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
555-817 |
4.13e-05 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 48.21 E-value: 4.13e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 555 KEAAKLREKRKSGLLSSFSLSMTDLSKSCEN--LSAVMLYNPGLFPVKGPICLRLEFERQQREELEKLESKRKQIEEMEE 632
Cdd:PTZ00121 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEarIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKK 1640
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 633 KQRSD--KAELVRMQQEVESQRKETEIVQLQ-----------------------IRKQEESLKrrsvhiesrlkdllaek 687
Cdd:PTZ00121 1641 KEAEEkkKAEELKKAEEENKIKAAEEAKKAEedkkkaeeakkaeedekkaaealKKEAEEAKK----------------- 1703
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 688 ekfeeerlreqqeIELQKKKQQEEIfaRVKEELQRLQELNhKEKAEKMQifRELEKLKKeKDEQYIKLESEKKRIEEQER 767
Cdd:PTZ00121 1704 -------------AEELKKKEAEEK--KKAEELKKAEEEN-KIKAEEAK--KEAEEDKK-KAEEAKKDEEEKKKIAHLKK 1764
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|.
gi 2024393550 768 EQvmlVAHLEEQLREKQVMIQL-LKRGDVQRVEEEKRDLEDIRESLLKVKE 817
Cdd:PTZ00121 1765 EE---EKKAEEIRKEKEAVIEEeLDEEDEKRRMEVDKKIKDIFDNFANIIE 1812
|
|
| Cast |
pfam10174 |
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part ... |
612-1114 |
5.25e-05 |
|
RIM-binding protein of the cytomatrix active zone; This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains.
Pssm-ID: 431111 [Multi-domain] Cd Length: 766 Bit Score: 47.51 E-value: 5.25e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 612 QQREELEKLESKRKQIEEMEEKQRSDKAELvrmqqevesQRKETEIVQLQIR-----KQEESLKRrsvHIESrLKDLLAE 686
Cdd:pfam10174 269 DREEEIKQMEVYKSHSKFMKNKIDQLKQEL---------SKKESELLALQTKletltNQNSDCKQ---HIEV-LKESLTA 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 687 KEKFEEERLREQQEIELqKKKQQEEIFARVKEELQRLQElnhkekaEKMQIFRELEKLKKEKDEQYIKLESEKKRIEeqe 766
Cdd:pfam10174 336 KEQRAAILQTEVDALRL-RLEEKESFLNKKTKQLQDLTE-------EKSTLAGEIRDLKDMLDVKERKINVLQKKIE--- 404
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 767 reqvmlvaHLEEQLREKQVMIQLLKRgdvqRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKAQHSFIEFKKKQLEQ 846
Cdd:pfam10174 405 --------NLQEQLRDKDKQLAGLKE----RVKSLQTDSSNTDTALTTLEEALSEKERIIERLKEQREREDRERLEELES 472
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 847 LTILEKDLVQQMDHLEKDIAHEKETLEYLK-----LAE------------EEHVNLKKDDENFGDAVF-KAEEFDMVKLT 908
Cdd:pfam10174 473 LKKENKDLKEKVSALQPELTEKESSLIDLKehassLASsglkkdsklkslEIAVEQKKEECSKLENQLkKAHNAEEAVRT 552
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 909 EYRLQSKVRQLEylknNHLPALLEEKQRATEVLDRgLLGLdntLYQIEKEIEDKEEQLAQYRASTnqLQQLQETFEFTAN 988
Cdd:pfam10174 553 NPEINDRIRLLE----QEVARYKEESGKAQAEVER-LLGI---LREVENEKNDKDKKIAELESLT--LRQMKEQNKKVAN 622
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 989 VARQEEKVRKKEKEILQ-SREKQQREALEQAVAKLERRHSALQRRSTidfEIEEQKQKLATLNNSCSEQAGLQASLEAEQ 1067
Cdd:pfam10174 623 IKHGQQEMKKKGAQLLEeARRREDNLADNSQQLQLEELMGALEKTRQ---ELDATKARLSSTQQSLAEKDGHLTNLRAER 699
|
490 500 510 520
....*....|....*....|....*....|....*....|....*..
gi 2024393550 1068 KalEQDRERLDQEIQQLKQKIYESDggqkGNHGMLEekLSHSNSPTN 1114
Cdd:pfam10174 700 R--KQLEEILEMKQEALLAAISEKD----ANIALLE--LSSSKKKKT 738
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
605-1076 |
5.99e-05 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 47.66 E-value: 5.99e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 605 LRLEFERQQREELEKLESKRKQIEEMEEKQRSDKaelvrMQQEVESQRKETEivqlQIRKQEESLKRrsvhiESRLKDLL 684
Cdd:TIGR00618 201 LRSQLLTLCTPCMPDTYHERKQVLEKELKHLREA-----LQQTQQSHAYLTQ----KREAQEEQLKK-----QQLLKQLR 266
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 685 AEKEKFEEERLREQqeiELQKKKQQEEIFARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQYIKLeseKKRIEE 764
Cdd:TIGR00618 267 ARIEELRAQEAVLE---ETQERINRARKAAPLAAHIKAVTQIEQQAQRIHTELQSKMRSRAKLLMKRAAHV---KQQSSI 340
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 765 QEREQVMLVAHLEEQLREKQVMIQLLKRGDVQRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKAQHsfiefkkkQL 844
Cdd:TIGR00618 341 EEQRRLLQTLHSQEIHIRDAHEVATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQA--------TI 412
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 845 EQLTILEKDLVQQMDHLEKDIAHEKETLEYLKLAEEEHVNLKKDDENFGDAVF---KAEEFDMVKLTEYRLQ----SKVR 917
Cdd:TIGR00618 413 DTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAqslKEREQQLQTKEQIHLQetrkKAVV 492
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 918 QLEYLKNNHLPALLEEKQR--ATEVLDRGLLGLDNTLYQIEKEIEDKEEQL-----AQYRASTNQLQ----QLQETFEFT 986
Cdd:TIGR00618 493 LARLLELQEEPCPLCGSCIhpNPARQDIDNPGPLTRRMQRGEQTYAQLETSeedvyHQLTSERKQRAslkeQMQEIQQSF 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 987 ANVARQEEKVRKKEKEILQSREKQQREAleQAVAKLERRHSALQRRSTIDFEIEEQKQKLATLNNSCS-EQAGLQASLEA 1065
Cdd:TIGR00618 573 SILTQCDNRSKEDIPNLQNITVRLQDLT--EKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSqELALKLTALHA 650
|
490
....*....|.
gi 2024393550 1066 EQKALEQDRER 1076
Cdd:TIGR00618 651 LQLTLTQERVR 661
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
608-754 |
6.17e-05 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 47.08 E-value: 6.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 608 EFERQQREELEKLESkrkqieEMEEKQRSDKAELVRMQQEVEsQRKEteivqlQIRKQEESLKRRSVHIESRLKDLLAEK 687
Cdd:PRK12704 57 EALLEAKEEIHKLRN------EFEKELRERRNELQKLEKRLL-QKEE------NLDRKLELLEKREEELEKKEKELEQKQ 123
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024393550 688 EKFEEERLREQQEIELQKKK-------QQEEIfarvKEELqrLQELNHKEKAEKMQIFRELEKLKKEKDEQYIK 754
Cdd:PRK12704 124 QELEKKEEELEELIEEQLQElerisglTAEEA----KEIL--LEKVEEEARHEAAVLIKEIEEEAKEEADKKAK 191
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
611-820 |
7.92e-05 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 46.98 E-value: 7.92e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 611 RQQREELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQLQIRKQEESLKRRSVHIESRLKDLLAEKEKF 690
Cdd:TIGR02169 808 SRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDL 887
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 691 EEERLREQQEIELQKKKQQeEIFARVKEELQRLQELNHKekaekmqifreLEKLKKEKDEqyikLESEKKRIEEqEREQV 770
Cdd:TIGR02169 888 KKERDELEAQLRELERKIE-ELEAQIEKKRKRLSELKAK-----------LEALEEELSE----IEDPKGEDEE-IPEEE 950
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 2024393550 771 MLVAHLEEQLREKQVMIQLLkrGDV-----QRVEEEKRDLEDIRESLLKVKEARS 820
Cdd:TIGR02169 951 LSLEDVQAELQRVEEEIRAL--EPVnmlaiQEYEEVLKRLDELKEKRAKLEEERK 1003
|
|
| CwlO1 |
COG3883 |
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function ... |
1004-1124 |
1.07e-04 |
|
Uncharacterized N-terminal coiled-coil domain of peptidoglycan hydrolase CwlO [Function unknown];
Pssm-ID: 443091 [Multi-domain] Cd Length: 379 Bit Score: 45.98 E-value: 1.07e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 1004 LQSREKQQREALEQAVAKLERRHSALQR-RSTIDFEIEEQKQKLATLNNSCSEQAGLQASLEAEQKALEQDRERLDQEIQ 1082
Cdd:COG3883 127 IADADADLLEELKADKAELEAKKAELEAkLAELEALKAELEAAKAELEAQQAEQEALLAQLSAEEAAAEAQLAELEAELA 206
|
90 100 110 120
....*....|....*....|....*....|....*....|..
gi 2024393550 1083 QLKQKIYESDGGQKGNHGMLEEKLSHSNSPTNPTKPQPPSAP 1124
Cdd:COG3883 207 AAEAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAASAAG 248
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
610-882 |
1.27e-04 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 45.68 E-value: 1.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 610 ERQQREELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQLQI--RKQEESLKRRSVHIESRLKDLLAEK 687
Cdd:pfam13868 30 EKKRIKAEEKEEERRLDEMMEEERERALEEEEEKEEERKEERKRYRQELEEQIeeREQKRQEEYEEKLQEREQMDEIVER 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 688 EKFEEERLREQQEIELQKKKQQEEIFARVKEELQRLQELnhKEKAEKMQIFRELeklkKEKDEQYIKLESEKKRI-EEQE 766
Cdd:pfam13868 110 IQEEDQAEAEEKLEKQRQLREEIDEFNEEQAEWKELEKE--EEREEDERILEYL----KEKAEREEEREAEREEIeEEKE 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 767 REQVMLVAHLEEQLREKQVMIQLLkrgdVQRVEEEKRDLEDIREsllkvKEARSEGEENCEELEKAQHSFIEFKKKQLEQ 846
Cdd:pfam13868 184 REIARLRAQQEKAQDEKAERDELR----AKLYQEEQERKERQKE-----REEAEKKARQRQELQQAREEQIELKERRLAE 254
|
250 260 270
....*....|....*....|....*....|....*..
gi 2024393550 847 LTILEKDLVQQM-DHLEKDIAHEKETLEYLKLAEEEH 882
Cdd:pfam13868 255 EAEREEEEFERMlRKQAEDEEIEQEEAEKRRMKRLEH 291
|
|
| DUF4659 |
pfam15558 |
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins ... |
613-819 |
1.67e-04 |
|
Domain of unknown function (DUF4659); This family of proteins is found in eukaryotes. Proteins in this family are typically between 427 and 674 amino acids in length. There are two completely conserved residues (D and I) that may be functionally important.
Pssm-ID: 464768 [Multi-domain] Cd Length: 374 Bit Score: 45.41 E-value: 1.67e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 613 QREELEKLESKRKQIEEmEEKQRSDKAELVRMQQEVESQRKEteiVQLQIRKQEESLKRRSVHIESRLKDLLAEKEKFEE 692
Cdd:pfam15558 33 AWEELRRRDQKRQETLE-RERRLLLQQSQEQWQAEKEQRKAR---LGREERRRADRREKQVIEKESRWREQAEDQENQRQ 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 693 ERLREQQEIELQKKKQQEEIFARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQYIKLESEKKRIEEQEREQVMl 772
Cdd:pfam15558 109 EKLERARQEAEQRKQCQEQRLKEKEEELQALREQNSLQLQERLEEACHKRQLKEREEQKKVQENNLSELLNHQARKVLV- 187
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 2024393550 773 vahlEEQLREKQVMIQLLKRGDVQRVEEEKRDLEDIRESLLKVKEAR 819
Cdd:pfam15558 188 ----DCQAKAEELLRRLSLEQSLQRSQENYEQLVEERHRELREKAQK 230
|
|
| COG5022 |
COG5022 |
Myosin heavy chain [General function prediction only]; |
611-817 |
1.82e-04 |
|
Myosin heavy chain [General function prediction only];
Pssm-ID: 227355 [Multi-domain] Cd Length: 1463 Bit Score: 45.84 E-value: 1.82e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 611 RQQREELEKLESKRKQIEEMEEKQRSdkaelVRMQQEVESQRKETEIVQ-----LQIRKQEESLKRRSVHIESRLKDLLA 685
Cdd:COG5022 806 LGSRKEYRSYLACIIKLQKTIKREKK-----LRETEEVEFSLKAEVLIQkfgrsLKAKKRFSLLKKETIYLQSAQRVELA 880
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 686 EKEKFEEERLREQQEIELQKKKQQEEIFARVKEELQRLQELNHKEKAEKMQifrELEKLKKEKD------------EQYI 753
Cdd:COG5022 881 ERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIA---RLKKLLNNIDleegpsieyvklPELN 957
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024393550 754 KLESEKKRIEEQEREQVMLVAHLEEQLREKQVMIQLLKRgDVQRVEEEKRDLEDIRESLLKVKE 817
Cdd:COG5022 958 KLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKN-FKKELAELSKQYGALQESTKQLKE 1020
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
611-783 |
2.27e-04 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 44.15 E-value: 2.27e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 611 RQQREELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQLQIRKQEESLKRrsvhIESRLKDLLAEKEKF 690
Cdd:COG1579 3 PEDLRALLDLQELDSELDRLEHRLKELPAELAELEDELAALEARLEAAKTELEDLEKEIKR----LELEIEEVEARIKKY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 691 EEERLREQQE---------IELQKKKQQ--EEIFARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQYIKLESEK 759
Cdd:COG1579 79 EEQLGNVRNNkeyealqkeIESLKRRISdlEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAELEAEL 158
|
170 180
....*....|....*....|....
gi 2024393550 760 KRIEEQEREqvmLVAHLEEQLREK 783
Cdd:COG1579 159 EELEAEREE---LAAKIPPELLAL 179
|
|
| Yop-YscD_cpl |
pfam16697 |
Inner membrane component of T3SS, cytoplasmic domain; Yop-YscD-cpl is the cytoplasmic domain ... |
471-555 |
2.55e-04 |
|
Inner membrane component of T3SS, cytoplasmic domain; Yop-YscD-cpl is the cytoplasmic domain of Yop proteins like YscD from Proteobacteria. YscD forms part of the inner membrane component of the bacterial type III secretion injectosome apparatus.
Pssm-ID: 465238 [Multi-domain] Cd Length: 94 Bit Score: 41.09 E-value: 2.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 471 YHLKEGQTYVGREDamtEQDIVLHGLDLESEHCIFENLNGTVNLIPLN-GAQCSVNGIQITEATH-LNQGAVILLGRTnM 548
Cdd:pfam16697 12 FPLEGGRYRIGSDP---DCDIVLSDKEVSRVHLKLEVDDEGWRLDDLGsGNGTLVNGQRVTELGIaLRPGDRIELGQT-E 87
|
....*..
gi 2024393550 549 FRFNHPK 555
Cdd:pfam16697 88 FCLVPAD 94
|
|
| SMC_prok_A |
TIGR02169 |
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
758-1088 |
2.92e-04 |
|
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 45.44 E-value: 2.92e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 758 EKKRIEEQEREQVmlvahlEEQLREKQVMIQLlKRGDVQRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKAQHSFI 837
Cdd:TIGR02169 170 RKKEKALEELEEV------EENIERLDLIIDE-KRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAI 242
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 838 EF----KKKQLEQLTILEKDLVQQMDHLEKDIAHEKETLEylKLAEEEHVNLKKDDENfgdavfkaeefdmvklteyrLQ 913
Cdd:TIGR02169 243 ERqlasLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK--DLGEEEQLRVKEKIGE--------------------LE 300
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 914 SKVRQLEylknnhlpALLEEKQRATEVLDRGLLGLDNTLYQIEKEIEDKEEQLAQYRASTNQLQQLQETFEFTANVARQE 993
Cdd:TIGR02169 301 AEIASLE--------RSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAE 372
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 994 EKVRKKEKEILQSREKQQREALEqavaKLERRHSALQR-RSTIDFEIEEQKQKLATLNNSCseqaglqASLEAEQKALEQ 1072
Cdd:TIGR02169 373 LEEVDKEFAETRDELKDYREKLE----KLKREINELKReLDRLQEELQRLSEELADLNAAI-------AGIEAKINELEE 441
|
330
....*....|....*.
gi 2024393550 1073 DRERLDQEIQQLKQKI 1088
Cdd:TIGR02169 442 EKEDKALEIKKQEWKL 457
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
865-1090 |
3.06e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 45.11 E-value: 3.06e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 865 IAHEKE-TLEYLKLAEEEHVNLKKDDENFGDAVFKAEEFDMVKLTEYRLQSKVRQ-LEYLKNNHLpaLLEEKQRATEvld 942
Cdd:pfam17380 342 MAMERErELERIRQEERKRELERIRQEEIAMEISRMRELERLQMERQQKNERVRQeLEAARKVKI--LEEERQRKIQ--- 416
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 943 rgllgldntlyqiEKEIEDKEEQLAQYRASTNQLQQLQETFEFTANVARQEEKVRKKEKEIL-QSREKQQREALEQAVAK 1021
Cdd:pfam17380 417 -------------QQKVEMEQIRAEQEEARQREVRRLEEERAREMERVRLEEQERQQQVERLrQQEEERKRKKLELEKEK 483
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024393550 1022 LERRHSALQRRSTIDFEIEEQKQKLATLNNscsEQAGLQASLEAEQKALEQDRERLDQEIQQLKQKIYE 1090
Cdd:pfam17380 484 RDRKRAEEQRRKILEKELEERKQAMIEEER---KRKLLEKEMEERQKAIYEEERRREAEEERRKQQEME 549
|
|
| DUF4670 |
pfam15709 |
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins ... |
605-768 |
3.20e-04 |
|
Domain of unknown function (DUF4670); This family of proteins is found in eukaryotes. Proteins in this family are typically between 373 and 763 amino acids in length.
Pssm-ID: 464815 [Multi-domain] Cd Length: 522 Bit Score: 44.94 E-value: 3.20e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 605 LRLEFERQQREELEKLESKRKQIEEMEEKQRSDKA-ELVRMQQEVESQRKETE-----IVQLQIRKQEESLKRrsvhies 678
Cdd:pfam15709 374 MREELELEQQRRFEEIRLRKQRLEEERQRQEEEERkQRLQLQAAQERARQQQEefrrkLQELQRKKQQEEAER------- 446
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 679 rlkdllAEKEKfeeerlREQQEIELQKKKQQEEIFARVKEElqRLQELNHKEKAEKMQIFRELEKLKKEKDEQYIKLESE 758
Cdd:pfam15709 447 ------AEAEK------QRQKELEMQLAEEQKRLMEMAEEE--RLEYQRQKQEAEEKARLEAEERRQKEEEAARLALEEA 512
|
170
....*....|
gi 2024393550 759 KKRIEEQERE 768
Cdd:pfam15709 513 MKQAQEQARQ 522
|
|
| PRK12704 |
PRK12704 |
phosphodiesterase; Provisional |
609-769 |
4.50e-04 |
|
phosphodiesterase; Provisional
Pssm-ID: 237177 [Multi-domain] Cd Length: 520 Bit Score: 44.38 E-value: 4.50e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 609 FERQQREELEKLESKRKQI---EEMEEKQRSDKAELvRMQQEVESQRKETE----IVQLQIRKQEESLKRRSVHIESRLK 681
Cdd:PRK12704 25 RKKIAEAKIKEAEEEAKRIleeAKKEAEAIKKEALL-EAKEEIHKLRNEFEkelrERRNELQKLEKRLLQKEENLDRKLE 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 682 DLLAEKEKFEEERLREQQEIELQKKKQQE--EIFARVKEELQRLQELNhKEKAEKMQIFRELEKLKKEKDEQYiklesek 759
Cdd:PRK12704 104 LLEKREEELEKKEKELEQKQQELEKKEEEleELIEEQLQELERISGLT-AEEAKEILLEKVEEEARHEAAVLI------- 175
|
170
....*....|
gi 2024393550 760 KRIEEQEREQ 769
Cdd:PRK12704 176 KEIEEEAKEE 185
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
612-862 |
4.65e-04 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 44.57 E-value: 4.65e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 612 QQREELEKLESKRKQIEEMEEKQRsDKAELVRMQQEVESQRKETEIVQLQIRKQEESLKRRSV-HIESRLKDLLAEKEKF 690
Cdd:TIGR00618 638 SQELALKLTALHALQLTLTQERVR-EHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLaQCQTLLRELETHIEEY 716
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 691 EEERLREQQEIELQKKK--QQEEIFARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQYIKLESEKKRIEEQERE 768
Cdd:TIGR00618 717 DREFNEIENASSSLGSDlaAREDALNQSLKELMHQARTVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREE 796
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 769 QVMLVAHLEEQLREK-QVMIQLLKRGDVQRVEEEKRDLEDIRESLLKVKEARSegeenceelekaQHSFIEFKKKQLEQL 847
Cdd:TIGR00618 797 DTHLLKTLEAEIGQEiPSDEDILNLQCETLVQEEEQFLSRLEEKSATLGEITH------------QLLKYEECSKQLAQL 864
|
250
....*....|....*
gi 2024393550 848 TILEKDLVQQMDHLE 862
Cdd:TIGR00618 865 TQEQAKIIQLSDKLN 879
|
|
| DUF5401 |
pfam17380 |
Family of unknown function (DUF5401); This is a family of unknown function found in ... |
688-937 |
5.41e-04 |
|
Family of unknown function (DUF5401); This is a family of unknown function found in Chromadorea.
Pssm-ID: 375164 [Multi-domain] Cd Length: 722 Bit Score: 44.34 E-value: 5.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 688 EKFEEErlreqqeielqKKKQQEEIFARvkeELQRLQELNHKEKAEKMQIFRElEKLKKEKDEQYIKLESEKKRIEEQER 767
Cdd:pfam17380 294 EKMEQE-----------RLRQEKEEKAR---EVERRRKLEEAEKARQAEMDRQ-AAIYAEQERMAMERERELERIRQEER 358
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 768 EQVMlvahleEQLREKQVMIQLLKRGDVQRVE-EEKRDLEDIRESLlkvKEARSEGEENCEELEKAQHSFIEFKKKQLEQ 846
Cdd:pfam17380 359 KREL------ERIRQEEIAMEISRMRELERLQmERQQKNERVRQEL---EAARKVKILEEERQRKIQQQKVEMEQIRAEQ 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 847 -------LTILEKDLVQQMDHLEKDIAHEKETLEYLKLAEEEHVNLKKDDENFGDAVFKAEEFDMvKLTEYRLQSKVRQL 919
Cdd:pfam17380 430 eearqreVRRLEEERAREMERVRLEEQERQQQVERLRQQEEERKRKKLELEKEKRDRKRAEEQRR-KILEKELEERKQAM 508
|
250 260
....*....|....*....|
gi 2024393550 920 --EYLKNNHLPALLEEKQRA 937
Cdd:pfam17380 509 ieEERKRKLLEKEMEERQKA 528
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
615-847 |
5.52e-04 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 44.09 E-value: 5.52e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 615 EELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQLQIRKQE---------ESLKRRSVHIESRLKDLLA 685
Cdd:pfam02029 5 EEAARERRRRAREERRRQKEEEEPSGQVTESVEPNEHNSYEEDSELKPSGQGgldeeeaflDRTAKREERRQKRLQEALE 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 686 EKEKFEEERLREQQEIELQKKKQQEEIFARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQYIKLESEKKRIEEQ 765
Cdd:pfam02029 85 RQKEFDPTIADEKESVAERKENNEEEENSSWEKEEKRDSRLGRYKEEETEIREKEYQENKWSTEVRQAEEEGEEEEDKSE 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 766 EREQVMLVAHLEEQLREKQVMIQLLKRGDVQRVEEEKRDL--------EDIRESLLKVKEARSEGEENCEELEKAQHSFI 837
Cdd:pfam02029 165 EAEEVPTENFAKEEVKDEKIKKEKKVKYESKVFLDQKRGHpevksqngEEEVTKLKVTTKRRQGGLSQSQEREEEAEVFL 244
|
250
....*....|
gi 2024393550 838 EFKKKqLEQL 847
Cdd:pfam02029 245 EAEQK-LEEL 253
|
|
| SMC_N |
pfam02463 |
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
354-1014 |
5.90e-04 |
|
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination.
Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.19 E-value: 5.90e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 354 RAKNIINKPTINEDPNVKLIRELRAEIARLKALLAQGNQIALLDSPTALSMEEKLQQNEARVQELTKEWT--NKWNETQN 431
Cdd:pfam02463 415 RQLEDLLKEEKKEELEILEEEEESIELKQGKLTEEKEELEKQELKLLKDELELKKSEDLLKETQLVKLQEqlELLLSRQK 494
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 432 ILKEQTLALRKEGIGVVLDSELPHLIGIDDDLLSTGIILYHLKEGQTYVGREDAMTEQDIVLHGLDLESEHC--IFENLN 509
Cdd:pfam02463 495 LEERSQKESKARSGLKVLLALIKDGVGGRIISAHGRLGDLGVAVENYKVAISTAVIVEVSATADEVEERQKLvrALTELP 574
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 510 GTVNLIPLNGAQCSVNGIQITEATHLNQGAVILLGRTNMFRFNHPKEAAKLREKRKSGLLSSFSLSMTDLSKSCENLSAV 589
Cdd:pfam02463 575 LGARKLRLLIPKLKLPLKSIAVLEIDPILNLAQLDKATLEADEDDKRAKVVEGILKDTELTKLKESAKAKESGLRKGVSL 654
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 590 MlynPGLFPVKGPICLRLEFERQQREELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQLQIRKQEESL 669
Cdd:pfam02463 655 E---EGLAEKSEVKASLSELTKELLEIQELQEKAESELAKEEILRRQLEIKKKEQREKEELKKLKLEAEELLADRVQEAQ 731
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 670 KRRSVHIESRLKDLLAEKEKFEEERLREQQEIELQKKKQQEEIFARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKD 749
Cdd:pfam02463 732 DKINEELKLLKQKIDEEEEEEEKSRLKKEEKEEEKSELSLKEKELAEEREKTEKLKVEEEKEEKLKAQEEELRALEEELK 811
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 750 EQYIKLESEKKRIEEQEREQvmlvahlEEQLREKQVMIQLLKRGDVQRVEEEKRDLEDIRESLLKVKEARSEGEENCEEL 829
Cdd:pfam02463 812 EEAELLEEEQLLIEQEEKIK-------EEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKL 884
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 830 EKAQHSFIEFKKKQLEQLTILEKDLVQQMDHLEKDIAHEKETLEYLKLAEEEHVNLKKDDENfgdavfkaeefdmvklte 909
Cdd:pfam02463 885 KDELESKEEKEKEEKKELEEESQKLNLLEEKENEIEERIKEEAEILLKYEEEPEELLLEEAD------------------ 946
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 910 yrlqskvrqLEYLKNNHLPALLEEKQRATEVLDrgLLGLDNtlyqiekeiedkeeqlaqyrastnqlqqLQETFEFTANV 989
Cdd:pfam02463 947 ---------EKEKEENNKEEEEERNKRLLLAKE--ELGKVN----------------------------LMAIEEFEEKE 987
|
650 660
....*....|....*....|....*
gi 2024393550 990 ARQEEKVRKKEKEILQSREKQQREA 1014
Cdd:pfam02463 988 ERYNKDELEKERLEEEKKKLIRAII 1012
|
|
| FHA_RADIL |
cd22733 |
forkhead associated (FHA) domain found in Ras-associating and dilute domain-containing protein ... |
452-554 |
6.44e-04 |
|
forkhead associated (FHA) domain found in Ras-associating and dilute domain-containing protein (Radil); Radil acts as an important small GTPase Rap1 effector required for cell spreading and migration. It regulates neutrophil adhesion and motility through linking Rap1 to beta2-integrin activation. It contains an FHA domain. The FHA domain is a small phosphopeptide recognition module, but this group may lack the conserved residues that are required for binding phosphothreonine.
Pssm-ID: 438785 Cd Length: 113 Bit Score: 40.55 E-value: 6.44e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 452 ELPHLIGIDDDLLSTGIILYHLKEGQTYVGREDAMTEQDIVLHGLDLESEHCIFENLNGT-------VNLIPLNGAQCSV 524
Cdd:cd22733 4 QSPHLLLLQGYNQQHDCLVYLLNREQHTVGQETPSSKPNISLSAPDILPLHCTIRRVRLPkhrseekLVLEPIPGAHVSV 83
|
90 100 110
....*....|....*....|....*....|
gi 2024393550 525 NGIQITEATHLNQGAVILLGRTNMFRFNHP 554
Cdd:cd22733 84 NFSEVERTTLLRHGDLLSFGAYYLFLFKDP 113
|
|
| UPF0242 |
pfam06785 |
Uncharacterized protein family (UPF0242) N-terminus; This region includes an N-terminal ... |
708-804 |
6.53e-04 |
|
Uncharacterized protein family (UPF0242) N-terminus; This region includes an N-terminal transmembrane region and a C-terminal coiled-coil.
Pssm-ID: 429117 [Multi-domain] Cd Length: 194 Bit Score: 42.12 E-value: 6.53e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 708 QQEEIFARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQYIKLESEKKRIEEQEREqvmlvahLEEQLREKQVMI 787
Cdd:pfam06785 80 LDAEGFKILEETLEELQSEEERLEEELSQKEEELRRLTEENQQLQIQLQQISQDFAEFRLE-------SEEQLAEKQLLI 152
|
90
....*....|....*...
gi 2024393550 788 QLLKRGDV-QRVEEEKRD 804
Cdd:pfam06785 153 NEYQQTIEeQRSVLEKRQ 170
|
|
| CCDC158 |
pfam15921 |
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. ... |
608-920 |
1.14e-03 |
|
Coiled-coil domain-containing protein 158; CCDC158 is a family of proteins found in eukaryotes. The function is not known.
Pssm-ID: 464943 [Multi-domain] Cd Length: 1112 Bit Score: 43.18 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 608 EFERQ------QREELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQLQIRKQEESL--------KRRS 673
Cdd:pfam15921 445 QMERQmaaiqgKNESLEKVSSLTAQLESTKEMLRKVVEELTAKKMTLESSERTVSDLTASLQEKERAIeatnaeitKLRS 524
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 674 vHIESRLKDL--LAEKEKFEEERLREQQEIELQKKkQQEEIFARVKEELQRLQEL--NHKEKAEKMQIFR---------- 739
Cdd:pfam15921 525 -RVDLKLQELqhLKNEGDHLRNVQTECEALKLQMA-EKDKVIEILRQQIENMTQLvgQHGRTAGAMQVEKaqlekeindr 602
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 740 --ELEKLKKEKDEQYIKLESEKKRIEEQEREQVMLVAHLEEQLRE----KQVMIQLLK-----RGDVQRVEEekrDLEDI 808
Cdd:pfam15921 603 rlELQEFKILKDKKDAKIRELEARVSDLELEKVKLVNAGSERLRAvkdiKQERDQLLNevktsRNELNSLSE---DYEVL 679
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 809 RESLLKVKEARSEGEENCEELEKAQHSFIEFKKKQLEQLTILEKDLVQQMDHLEKDIAHEKETLEYL----KLAEEEHVN 884
Cdd:pfam15921 680 KRNFRNKSEEMETTTNKLKMQLKSAQSELEQTRNTLKSMEGSDGHAMKVAMGMQKQITAKRGQIDALqskiQFLEEAMTN 759
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|.
gi 2024393550 885 LKKDDENFGDAVFK---------------AEEFDMVKLTEYRLQSKVRQLE 920
Cdd:pfam15921 760 ANKEKHFLKEEKNKlsqelstvateknkmAGELEVLRSQERRLKEKVANME 810
|
|
| rad50 |
TIGR00606 |
rad50; All proteins in this family for which functions are known are involvedin recombination, ... |
613-1084 |
1.23e-03 |
|
rad50; All proteins in this family for which functions are known are involvedin recombination, recombinational repair, and/or non-homologous end joining.They are components of an exonuclease complex with MRE11 homologs. This family is distantly related to the SbcC family of bacterial proteins.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Pssm-ID: 129694 [Multi-domain] Cd Length: 1311 Bit Score: 43.11 E-value: 1.23e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 613 QREELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRK-----ETEIVQLQIRKQEESLKRRSVHiesRLKDLLAEK 687
Cdd:TIGR00606 198 QGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREivksyENELDPLKNRLKEIEHNLSKIM---KLDNEIKAL 274
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 688 EKFEEERLREQQEIELQKkkqqEEIFARVKEELQRLQELNHKEKAEK----MQIFRELEKLKKEKDEqyikLESEKKRIE 763
Cdd:TIGR00606 275 KSRKKQMEKDNSELELKM----EKVFQGTDEQLNDLYHNHQRTVREKerelVDCQRELEKLNKERRL----LNQEKTELL 346
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 764 -EQEREQVMLVAHLEEQLREKQVMIQLLKRGDVQRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKAQHSFIEFKKK 842
Cdd:TIGR00606 347 vEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLKQE 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 843 QLEQLTILEKDLVQQMDHLEKDIAHEKETLEYLKLAEEEHVNLKKDDENFGDAVFKAEEfDMVKLTEYRL-QSKVRQLEY 921
Cdd:TIGR00606 427 QADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAER-ELSKAEKNSLtETLKKEVKS 505
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 922 LKNNHLPalleekqratevLDRGLLGLDNTLYQIEKEIEDKEEQLAQYRASTNQLQQLQETfEFTANVARQEEKVRKKEK 1001
Cdd:TIGR00606 506 LQNEKAD------------LDRKLRKLDQEMEQLNHHTTTRTQMEMLTKDKMDKDEQIRKI-KSRHSDELTSLLGYFPNK 572
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 1002 EILQSREKQQREALEQAVAKLERRHSALQRRSTIDFEIEEQKQKLATLNNSCSEQAGLQASLEAEQKALEQDRERLDQEI 1081
Cdd:TIGR00606 573 KQLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQDEESDLERLKEEIEKSS 652
|
...
gi 2024393550 1082 QQL 1084
Cdd:TIGR00606 653 KQR 655
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
606-812 |
1.41e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 43.00 E-value: 1.41e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 606 RLEFERQQREELEKLESKRKQIEEMEEKqRSDKAELVRMQQEVESQRKETEIVQLQIRKQEESLKRRSVHIESRLKDLLA 685
Cdd:COG1196 573 RATFLPLDKIRARAALAAALARGAIGAA-VDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTL 651
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 686 EKEkfeeERLREQQEIELQKKKQQEEIFARVKEELQRLQELNHKEKAEKMQIFRELEKLK-----KEKDEQYIKLESEKK 760
Cdd:COG1196 652 EGE----GGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERelaeaEEERLEEELEEEALE 727
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 2024393550 761 RIEEQEREQVMLVAHLEEQLREKQVMIQLLKRGDVQRVEEEKRDLEDIRESL 812
Cdd:COG1196 728 EQLEAEREELLEELLEEEELLEEEALEELPEPPDLEELERELERLEREIEAL 779
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
928-1090 |
1.50e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 928 PALLEEKQRATEVLDRGLLGLDNTLYQIEKEIEDKEEQLAQYRASTNQLQQLQETFEFTANVARQEEKVRKKEKEILQSR 1007
Cdd:COG4942 19 ADAAAEAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRALEQELAALEAELAELEKEIAELRAE 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 1008 EKQQREALEQAVAKLER--RHSALQ-------------RRSTIDFEIEEQKQKLATLNNSCSEQAGLQASLEAEQKALEQ 1072
Cdd:COG4942 99 LEAQKEELAELLRALYRlgRQPPLAlllspedfldavrRLQYLKYLAPARREQAEELRADLAELAALRAELEAERAELEA 178
|
170
....*....|....*...
gi 2024393550 1073 DRERLDQEIQQLKQKIYE 1090
Cdd:COG4942 179 LLAELEEERAALEALKAE 196
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
661-881 |
1.57e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 42.44 E-value: 1.57e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 661 QIRKQEESLKRRSVHIESRLKDLLAEKEKFEEERLREQQEIELQKKKQQEeIFARVKEELQRLQELNHKEKaekmqifrE 740
Cdd:COG4942 24 EAEAELEQLQQEIAELEKELAALKKEEKALLKQLAALERRIAALARRIRA-LEQELAALEAELAELEKEIA--------E 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 741 LEKLKKEKDEQYIKLESEKKRIEEQEREQVMLVAHLEEQLREKQVMIQLLKRGDVQRVEEEKRDLEDIRESLLKVKEARS 820
Cdd:COG4942 95 LRAELEAQKEELAELLRALYRLGRQPPLALLLSPEDFLDAVRRLQYLKYLAPARREQAEELRADLAELAALRAELEAERA 174
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024393550 821 EGEENCEELEKAQHSFIEFKKKQLEQLTILEKDLVQQMDHLEKDIAHEKETLEYLKLAEEE 881
Cdd:COG4942 175 ELEALLAELEEERAALEALKAERQKLLARLEKELAELAAELAELQQEAEELEALIARLEAE 235
|
|
| TPH |
pfam13868 |
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of ... |
610-873 |
1.72e-03 |
|
Trichohyalin-plectin-homology domain; This family is a mixtrue of two different families of eukaryotic proteins. Trichoplein or mitostatin, was first defined as a meiosis-specific nuclear structural protein. It has since been linked with mitochondrial movement. It is associated with the mitochondrial outer membrane, and over-expression leads to reduction in mitochondrial motility whereas lack of it enhances mitochondrial movement. The activity appears to be mediated through binding the mitochondria to the actin intermediate filaments (IFs). The family is in the trichohyalin-plectin-homology domain.
Pssm-ID: 464007 [Multi-domain] Cd Length: 341 Bit Score: 42.21 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 610 ERQQREELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQLQIRKQEESLKRRSVHIESRLKDLLAEKEK 689
Cdd:pfam13868 87 QKRQEEYEEKLQEREQMDEIVERIQEEDQAEAEEKLEKQRQLREEIDEFNEEQAEWKELEKEEEREEDERILEYLKEKAE 166
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 690 FEEERLREQQEIELQKKKQQEEIFARVKEELQRLQELnhkekaEKMQIFRELEKLKKEKDEQyiklesEKKRIEEQEREQ 769
Cdd:pfam13868 167 REEEREAEREEIEEEKEREIARLRAQQEKAQDEKAER------DELRAKLYQEEQERKERQK------EREEAEKKARQR 234
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 770 VMLVAHLEEQLREKQVMIQLLKRgdvQRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKAQHSFIEFKKKQLEQLTI 849
Cdd:pfam13868 235 QELQQAREEQIELKERRLAEEAE---REEEEFERMLRKQAEDEEIEQEEAEKRRMKRLEHRRELEKQIEEREEQRAAERE 311
|
250 260
....*....|....*....|....
gi 2024393550 850 LEkdlVQQMDHLEKDIAHEKETLE 873
Cdd:pfam13868 312 EE---LEEGERLREEEAERRERIE 332
|
|
| tolA |
PRK09510 |
cell envelope integrity inner membrane protein TolA; Provisional |
608-769 |
1.91e-03 |
|
cell envelope integrity inner membrane protein TolA; Provisional
Pssm-ID: 236545 [Multi-domain] Cd Length: 387 Bit Score: 42.10 E-value: 1.91e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 608 EFERQQREeleKLESKRKQieEMEEKQRSDKAELVRMQQEVESQR-KETEIVQLQIRKQEESlkrrsvHIESRLKDLLAE 686
Cdd:PRK09510 63 QYNRQQQQ---QKSAKRAE--EQRKKKEQQQAEELQQKQAAEQERlKQLEKERLAAQEQKKQ------AEEAAKQAALKQ 131
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 687 KEKfeeerlreqqeiELQKKKQQEEIFARVKEELQRLQELNHKEKAEKmQIFRELEKLKKEKDEQYIKLESEKKRIEEQE 766
Cdd:PRK09510 132 KQA------------EEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEA-KKKAEAEAAKKAAAEAKKKAEAEAAAKAAAE 198
|
...
gi 2024393550 767 REQ 769
Cdd:PRK09510 199 AKK 201
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
754-1088 |
2.06e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 42.35 E-value: 2.06e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 754 KLESEKKRIEEQEREQVMLVAHLEEQLREKQVMIQLLKRgdvqRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKAQ 833
Cdd:TIGR02168 681 ELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRK----ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKEL 756
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 834 HSFIEFKKKQLEQLTILEKDLVQQMDHLEKDIAHEKETLEYLKLAEEEHVNLKKDDENFGDAVFKAEEfdmvklteyRLQ 913
Cdd:TIGR02168 757 TELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRE---------RLE 827
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 914 SKVRQLEYLKNnHLPALLEEKQRATEVLDRGLLGLDNTLYQIEKEIEDKEEQLAQYRASTNQLQQLQETFEFTANVARQE 993
Cdd:TIGR02168 828 SLERRIAATER-RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELREL 906
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 994 -EKVRKKekeilqsreKQQREALEQAVAKLERRhsalqrrstidfeIEEQKQKLATLNNSCSEQAGLQAS-LEAEQKALE 1071
Cdd:TIGR02168 907 eSKRSEL---------RRELEELREKLAQLELR-------------LEGLEVRIDNLQERLSEEYSLTLEeAEALENKIE 964
|
330
....*....|....*..
gi 2024393550 1072 QDRERLDQEIQQLKQKI 1088
Cdd:TIGR02168 965 DDEEEARRRLKRLENKI 981
|
|
| Caldesmon |
pfam02029 |
Caldesmon; |
610-784 |
2.07e-03 |
|
Caldesmon;
Pssm-ID: 460421 [Multi-domain] Cd Length: 495 Bit Score: 42.16 E-value: 2.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 610 ERQQREELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQLQIRKQEE--SLKRRSVHIESR------LK 681
Cdd:pfam02029 137 EKEYQENKWSTEVRQAEEEGEEEEDKSEEAEEVPTENFAKEEVKDEKIKKEKKVKYESkvFLDQKRGHPEVKsqngeeEV 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 682 DLLAEKEKFEEERLREQQEIELQKKKQQEEifARVKEELQRLQELNHKEKAEKMQIFR-----ELEKLKKEKDEQYIKLE 756
Cdd:pfam02029 217 TKLKVTTKRRQGGLSQSQEREEEAEVFLEA--EQKLEELRRRRQEKESEEFEKLRQKQqeaelELEELKKKREERRKLLE 294
|
170 180
....*....|....*....|....*...
gi 2024393550 757 SEKKRIEEQEREQvmLVAHLEEQLREKQ 784
Cdd:pfam02029 295 EEEQRRKQEEAER--KLREEEEKRRMKE 320
|
|
| Rabaptin |
pfam03528 |
Rabaptin; |
608-810 |
2.08e-03 |
|
Rabaptin;
Pssm-ID: 367545 [Multi-domain] Cd Length: 486 Bit Score: 42.01 E-value: 2.08e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 608 EFERQQREELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQLQIR----KQEESLkrrsvhiESRLKDL 683
Cdd:pfam03528 97 EVKSQWQEEVASLQAIMKETVREYEVQFHRRLEQERAQWNQYRESAEREIADLRRRlsegQEEENL-------EDEMKKA 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 684 LAEKEKFEEERLREQQEIELQKKKQQEEIfARVKE-ELQRLQELNHKEKAEK---------MQIFRELEKLKKEKDEQYI 753
Cdd:pfam03528 170 QEDAEKLRSVVMPMEKEIAALKAKLTEAE-DKIKElEASKMKELNHYLEAEKscrtdlemyVAVLNTQKSVLQEDAEKLR 248
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024393550 754 KLESEKKRIEEQEREQVMLVAHLEEQLREKQVMIQLLKRGDVQRVE-----EEKRDLEDIRE 810
Cdd:pfam03528 249 KELHEVCHLLEQERQQHNQLKHTWQKANDQFLESQRLLMRDMQRMEsvltsEQLRQVEEIKK 310
|
|
| sbcc |
TIGR00618 |
exonuclease SbcC; All proteins in this family for which functions are known are part of an ... |
608-1088 |
2.25e-03 |
|
exonuclease SbcC; All proteins in this family for which functions are known are part of an exonuclease complex with sbcD homologs. This complex is involved in the initiation of recombination to regulate the levels of palindromic sequences in DNA. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 129705 [Multi-domain] Cd Length: 1042 Bit Score: 42.26 E-value: 2.25e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 608 EFERQQREELEKLESKRKQIEEMEEKQRSDKaELVRMQQEVESQRKETEIVQLQIRKQEESLK-----RRSVHIESRLKD 682
Cdd:TIGR00618 233 EALQQTQQSHAYLTQKREAQEEQLKKQQLLK-QLRARIEELRAQEAVLEETQERINRARKAAPlaahiKAVTQIEQQAQR 311
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 683 LLAE-KEKFEEERLREQQEIELQKKKQQEEIFARVKEELQRLQELNHKEkAEKMQIFRElEKLKKEKDEQYIKLESEKKR 761
Cdd:TIGR00618 312 IHTElQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDA-HEVATSIRE-ISCQQHTLTQHIHTLQQQKT 389
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 762 IEEQereQVMLVAHLEEQLREkqvmiqllkrgdvqrvEEEKRDLEDIRESLLKVKEARSEGEENCEELEKAQHSFIEFKK 841
Cdd:TIGR00618 390 TLTQ---KLQSLCKELDILQR----------------EQATIDTRTSAFRDLQGQLAHAKKQQELQQRYAELCAAAITCT 450
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 842 KQLEQLTILEKDLVQQMDHLEKDIAHEKETLeYLKLAEEEHVNLKKDDEnfgdavfKAEEFDMVKLTEYRLQSKVRQLEY 921
Cdd:TIGR00618 451 AQCEKLEKIHLQESAQSLKEREQQLQTKEQI-HLQETRKKAVVLARLLE-------LQEEPCPLCGSCIHPNPARQDIDN 522
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 922 LKNNHLPALLEEKQRATevLDRGLLGLDNTLYQIEKEIEDKEEQLAQYRASTNQLQQLQETFEFTANVARQEEKVRKKEK 1001
Cdd:TIGR00618 523 PGPLTRRMQRGEQTYAQ--LETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLT 600
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 1002 EILQSREKQQREALEQAVAKLERRHSALQRRSTIDFEIEEQKQKLATL-----NNSCSEQAGLQASLEAEQKALEQDRER 1076
Cdd:TIGR00618 601 EKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALhalqlTLTQERVREHALSIRVLPKELLASRQL 680
|
490
....*....|..
gi 2024393550 1077 LDQEIQQLKQKI 1088
Cdd:TIGR00618 681 ALQKMQSEKEQL 692
|
|
| COG1340 |
COG1340 |
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]; |
611-816 |
2.43e-03 |
|
Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown];
Pssm-ID: 440951 [Multi-domain] Cd Length: 297 Bit Score: 41.43 E-value: 2.43e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 611 RQQREEL-EKLESKRKQIEEMEEKQ---RSDKAELVRMQQEVESQRKETEIVQLQIRKQEEsLKRRSVHIESRLKDLLAE 686
Cdd:COG1340 77 KEERDELnEKLNELREELDELRKELaelNKAGGSIDKLRKEIERLEWRQQTEVLSPEEEKE-LVEKIKELEKELEKAKKA 155
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 687 KEKFEEERLREQQEIELqkKKQQEEIFARVKEELQRLQELnhkeKAEKMQIFRELEKLKKEKDEQYIKLESEKKRIEEQE 766
Cdd:COG1340 156 LEKNEKLKELRAELKEL--RKEAEEIHKKIKELAEEAQEL----HEEMIELYKEADELRKEADELHKEIVEAQEKADELH 229
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 2024393550 767 REQVMLVAHLEEqlREKQVMIQLLKRGDVQRVEEEKRDLEDIRESLLKVK 816
Cdd:COG1340 230 EEIIELQKELRE--LRKELKKLRKKQRALKREKEKEELEEKAEEIFEKLK 277
|
|
| Mitofilin |
pfam09731 |
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. ... |
611-735 |
2.66e-03 |
|
Mitochondrial inner membrane protein; Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains.
Pssm-ID: 430783 [Multi-domain] Cd Length: 618 Bit Score: 42.05 E-value: 2.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 611 RQQREELEKLEskRKQIEEMEEKQRSDKAELvrmqqEVESQRKETEIVQLQIRKQEESLKRRSVHIESRLKDLLAEKEkf 690
Cdd:pfam09731 319 EKQKEELDKLA--EELSARLEEVRAADEAQL-----RLEFEREREEIRESYEEKLRTELERQAEAHEEHLKDVLVEQE-- 389
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 2024393550 691 eeerlreqqeIELQKKKQQEeifarVKEELQRlQELNHKEKAEKM 735
Cdd:pfam09731 390 ----------IELQREFLQD-----IKEKVEE-ERAGRLLKLNEL 418
|
|
| CALCOCO1 |
pfam07888 |
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are ... |
714-1088 |
2.86e-03 |
|
Calcium binding and coiled-coil domain (CALCOCO1) like; Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region.
Pssm-ID: 462303 [Multi-domain] Cd Length: 488 Bit Score: 41.80 E-value: 2.86e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 714 ARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEqyikLESEKKRIEEQereqvmlVAHLEEQLREKqvmiqllkRG 793
Cdd:pfam07888 34 NRLEECLQERAELLQAQEAANRQREKEKERYKRDREQ----WERQRRELESR-------VAELKEELRQS--------RE 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 794 DVQRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKAQHSFIE-FKKKQLEQLTILE--KDLVQQMDHLEKDIAHEKE 870
Cdd:pfam07888 95 KHEELEEKYKELSASSEELSEEKDALLAQRAAHEARIRELEEDIKtLTQRVLERETELErmKERAKKAGAQRKEEEAERK 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 871 TLEY-LKLAEEEHVNLKKD--------DENFGDAVFKAEEFDMVKLTEYRLQSKVRQLEYLKNN--HLPALLEEKQRATE 939
Cdd:pfam07888 175 QLQAkLQQTEEELRSLSKEfqelrnslAQRDTQVLQLQDTITTLTQKLTTAHRKEAENEALLEElrSLQERLNASERKVE 254
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 940 VLDRGLLGLDNTLYQIEKEIEDKEEQLAQyraSTNQLQQLQETF-EFTANVARQEEKvrkkekeILQSREKQqREALEQA 1018
Cdd:pfam07888 255 GLGEELSSMAAQRDRTQAELHQARLQAAQ---LTLQLADASLALrEGRARWAQERET-------LQQSAEAD-KDRIEKL 323
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024393550 1019 VAKLERRHSALQ--RRSTIDFEIE---EQKQKLATLNNSCSEQAGLQASLEAEQKALEQ---DRERLDQEIQQLKQKI 1088
Cdd:pfam07888 324 SAELQRLEERLQeeRMEREKLEVElgrEKDCNRVQLSESRRELQELKASLRVAQKEKEQlqaEKQELLEYIRQLEQRL 401
|
|
| wall_bind_EntB |
NF040676 |
cell wall-binding protein EntB; This HMM describes the cell wall-binding protein EntB, as ... |
618-833 |
3.75e-03 |
|
cell wall-binding protein EntB; This HMM describes the cell wall-binding protein EntB, as found in Bacillus cereus. EntB is related to EntA, EntC, and EndD. All Ent family proteins have a signal peptide, an N-terminal SH3 domain and a C-terminal 3D (Asp-Asp-Asp) domain. EntB and EndC have a central region with a highly variable number of repeats resembling KAXEXX. The gene symbol derives from the notion that at least some members of the family function as enterotoxins, but more recent descriptions focus on roles in stress response and cell wall integrity.
Pssm-ID: 468642 [Multi-domain] Cd Length: 476 Bit Score: 41.31 E-value: 3.75e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 618 EKLESKRKQIEEMeekQRSDKAELVRMQQEVeSQRKETEIVQLQIRKQEESLKRRSVHIESRLKDLLAEKEKfeeerlre 697
Cdd:NF040676 149 KKADEKTKQVAKV---QKSVKAKEEAKTQKV-AKAKETTKAQEIVKPKEEVKVQEVVKPKEEPKVQEIVKPK-------- 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 698 qqeielQKKKQQEEifARVKEElQRLQELNHKEKAEKMQifrELEKLKKEKDEQYIKLESEKKRIE------EQEREQVM 771
Cdd:NF040676 217 ------EEVKVQEE--VKPKEE-EKVQEIVKPKEEAKVQ---EEVKVKEEAKVQEIAKAKEEAKAQeiakakEEAKAQEI 284
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024393550 772 LVAHLEEQLREKQVMIQLLKRGDVQRVEEEkrdlEDIRESLLKVKEARSEGEENCEELEKAQ 833
Cdd:NF040676 285 AKAKEEAKAQEIAKAKEEEKAQEIAKAKEE----AKAREIAKAKEEEKAREIAKAKEEAKAR 342
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
605-1087 |
3.89e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 41.44 E-value: 3.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 605 LRLEFERQQREELEKleskrkQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQLQIR----KQEESLKRRSVHIESRL 680
Cdd:COG4913 281 LRLWFAQRRLELLEA------ELEELRAELARLEAELERLEARLDALREELDELEAQIRgnggDRLEQLEREIERLEREL 354
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 681 KDLLAEKEKFEEERLREQQEIELQkkkqqEEIFARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQYIKLESEKK 760
Cdd:COG4913 355 EERERRRARLEALLAALGLPLPAS-----AEEFAALRAEAAALLEALEEELEALEEALAEAEAALRDLRRELRELEAEIA 429
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 761 RIEEQ----EREQVMLVAHLEEQL--REKQVMI--QLLkrgDVQRVEEEKRD-----LEDIRESLL-------KVKEA-R 819
Cdd:COG4913 430 SLERRksniPARLLALRDALAEALglDEAELPFvgELI---EVRPEEERWRGaiervLGGFALTLLvppehyaAALRWvN 506
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 820 SEGEENCEELEKAQHSFIEFKKKQLEQLTILEKDLVQQ-------MDHLEKDIAHEK-ETLEYLK----------LAEEE 881
Cdd:COG4913 507 RLHLRGRLVYERVRTGLPDPERPRLDPDSLAGKLDFKPhpfrawlEAELGRRFDYVCvDSPEELRrhpraitragQVKGN 586
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 882 HVNLKKDDENFGDAV----FKAEEfdmvklteyRLQSKVRQLEYLKNNHLPAL-----LEEKQRATEVLDRGLLGLDNT- 951
Cdd:COG4913 587 GTRHEKDDRRRIRSRyvlgFDNRA---------KLAALEAELAELEEELAEAEerleaLEAELDALQERREALQRLAEYs 657
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 952 -----LYQIEKEIEDKEEQLAQYRASTNQLQQLQETFEfTANVARQEEKVRKKEKEILQSREKQQREALEQAVAKLERRH 1026
Cdd:COG4913 658 wdeidVASAEREIAELEAELERLDASSDDLAALEEQLE-ELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQDRL 736
|
490 500 510 520 530 540
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024393550 1027 SALQRRSTID--FEIEEQKQKLATLNNSCSEQAGLQASLEAEQKALEQDRERLDQEIQQLKQK 1087
Cdd:COG4913 737 EAAEDLARLElrALLEERFAAALGDAVERELRENLEERIDALRARLNRAEEELERAMRAFNRE 799
|
|
| DR0291 |
COG1579 |
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General ... |
651-819 |
4.22e-03 |
|
Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only];
Pssm-ID: 441187 [Multi-domain] Cd Length: 236 Bit Score: 40.29 E-value: 4.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 651 QRKETEIVQlqIRKQEESLKRRSVHIESRLKDLLAEKEKfeeerlreqqeIELQKKKQQEEIfARVKEELQRLQELNHKE 730
Cdd:COG1579 13 QELDSELDR--LEHRLKELPAELAELEDELAALEARLEA-----------AKTELEDLEKEI-KRLELEIEEVEARIKKY 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 731 KAEKMQIF--RELEKLKKEKDeqyiKLESEKKRIEEQEREQVMLVAHLEEQLREKQVMIQLLKRGDVQRVEEEKRDLEDI 808
Cdd:COG1579 79 EEQLGNVRnnKEYEALQKEIE----SLKRRISDLEDEILELMERIEELEEELAELEAELAELEAELEEKKAELDEELAEL 154
|
170
....*....|.
gi 2024393550 809 RESLLKVKEAR 819
Cdd:COG1579 155 EAELEELEAER 165
|
|
| FHA_Ki67 |
cd22673 |
forkhead associated (FHA) domain found in proliferation marker protein Ki-67 and similar ... |
473-551 |
4.26e-03 |
|
forkhead associated (FHA) domain found in proliferation marker protein Ki-67 and similar proteins; Ki-67, also called antigen identified by monoclonal antibody Ki-67, antigen KI-67, or antigen Ki67, acts as a biological surfactant to disperse mitotic chromosomes. It is required to maintain individual mitotic chromosomes dispersed in the cytoplasm following nuclear envelope disassembly. Ki-67 binds DNA with a preference for supercoiled DNA and AT-rich DNA. It may also play a role in chromatin organization. Ki-67 contains an FHA domain at its N-terminus. The FHA domain is a small phosphopeptide recognition module.
Pssm-ID: 438725 [Multi-domain] Cd Length: 95 Bit Score: 37.58 E-value: 4.26e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 473 LKEGQTYVGREDamtEQDIVLHGLDLESEHCIFENL-NGTVNLIPL---NGAQcsVNGIQITEATHLNQGAVILLGrTNM 548
Cdd:cd22673 18 LTKKSCTFGRDL---SCDIRIQLPGVSREHCRIEVDeNGKAYLENLsttNPTL--VNGKAIEKSAELKDGDVITIG-GRS 91
|
...
gi 2024393550 549 FRF 551
Cdd:cd22673 92 FRF 94
|
|
| MAP7 |
pfam05672 |
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is ... |
608-764 |
4.52e-03 |
|
MAP7 (E-MAP-115) family; The organization of microtubules varies with the cell type and is presumably controlled by tissue-specific microtubule-associated proteins (MAPs). The 115-kDa epithelial MAP (E-MAP-115/MAP7) has been identified as a microtubule-stabilising protein predominantly expressed in cell lines of epithelial origin. The binding of this microtubule associated protein is nucleotide independent.
Pssm-ID: 461709 [Multi-domain] Cd Length: 153 Bit Score: 39.25 E-value: 4.52e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 608 EFERQQREELEKLESKRKQIEEME---EKQRSDKAELVRMQQEVESQRKETEivqlqiRKQEESLKRRSVhIESRLKDLL 684
Cdd:pfam05672 18 EKRRQAREQREREEQERLEKEEEErlrKEELRRRAEEERARREEEARRLEEE------RRREEEERQRKA-EEEAEEREQ 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 685 AEKEKfeeerlreqqEIELQKKKQQEEIFARvkeelqrlqelnhkEKAEKMQIFRELEKLKKEKDEQyikleSEKKRIEE 764
Cdd:pfam05672 91 REQEE----------QERLQKQKEEAEAKAR--------------EEAERQRQEREKIMQQEEQERL-----ERKKRIEE 141
|
|
| mukB |
PRK04863 |
chromosome partition protein MukB; |
1010-1088 |
4.55e-03 |
|
chromosome partition protein MukB;
Pssm-ID: 235316 [Multi-domain] Cd Length: 1486 Bit Score: 41.48 E-value: 4.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 1010 QQREALEQAVAKLERRHSALQR----------RSTIDFEIEEQKQKLAtlnnscSEQAGLQASLEAEQKALEQDRERLDQ 1079
Cdd:PRK04863 513 EQLQQLRMRLSELEQRLRQQQRaerllaefckRLGKNLDDEDELEQLQ------EELEARLESLSESVSEARERRMALRQ 586
|
....*....
gi 2024393550 1080 EIQQLKQKI 1088
Cdd:PRK04863 587 QLEQLQARI 595
|
|
| PTZ00266 |
PTZ00266 |
NIMA-related protein kinase; Provisional |
719-804 |
4.77e-03 |
|
NIMA-related protein kinase; Provisional
Pssm-ID: 173502 [Multi-domain] Cd Length: 1021 Bit Score: 41.26 E-value: 4.77e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 719 ELQRLQELNHKEKAEKMQIfreLEKLKKEKDEQYIKLESEKKRIEEQEREQVMlvahlEEQLREKQVMIQLLKRGDVQRV 798
Cdd:PTZ00266 436 ERARIEKENAHRKALEMKI---LEKKRIERLEREERERLERERMERIERERLE-----RERLERERLERDRLERDRLDRL 507
|
....*.
gi 2024393550 799 EEEKRD 804
Cdd:PTZ00266 508 ERERVD 513
|
|
| SMC_prok_B |
TIGR02168 |
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
606-1096 |
5.27e-03 |
|
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]
Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 41.20 E-value: 5.27e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 606 RLEFERQQREEL--------EKLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQ---LQIRKQEESLKRRSV 674
Cdd:TIGR02168 324 QLEELESKLDELaeelaeleEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRskvAQLELQIASLNNEIE 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 675 HIESRLKDLLAEKEKFEEERLREQQEIELQKKKQQEEIFARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQYIK 754
Cdd:TIGR02168 404 RLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERE 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 755 LESEKKRIEEQEReqvMLVAHLEEQLREKQVM------------------------------------------------ 786
Cdd:TIGR02168 484 LAQLQARLDSLER---LQENLEGFSEGVKALLknqsglsgilgvlselisvdegyeaaieaalggrlqavvvenlnaakk 560
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 787 -IQLLKRGDVQRV-------EEEKRDLEDIRESLLKVKEARSEGEENCEELEKAQHSF----------------IEFKKK 842
Cdd:TIGR02168 561 aIAFLKQNELGRVtflpldsIKGTEIQGNDREILKNIEGFLGVAKDLVKFDPKLRKALsyllggvlvvddldnaLELAKK 640
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 843 QLEQLTI--LEKDLV---------------------QQMDHLEKDIAHEKETLEYLKLAEEEhvnLKKDDENFGDAVFKA 899
Cdd:TIGR02168 641 LRPGYRIvtLDGDLVrpggvitggsaktnssilerrREIEELEEKIEELEEKIAELEKALAE---LRKELEELEEELEQL 717
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 900 EEfdmvklteyRLQSKVRQLEYLKNNhLPALLEEKQRATEVLDRGLLGLDNTLYQIEKEIEDKEEQLAQYRASTNQLQQL 979
Cdd:TIGR02168 718 RK---------ELEELSRQISALRKD-LARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEEL 787
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 980 QEtfefTANVARQEEKVRKKEKEILQSREKQQREA---LEQAVAKLERRHSALQRRST-IDFEIEEQKQKLATLNNSCSE 1055
Cdd:TIGR02168 788 EA----QIEQLKEELKALREALDELRAELTLLNEEaanLRERLESLERRIAATERRLEdLEEQIEELSEDIESLAAEIEE 863
|
570 580 590 600
....*....|....*....|....*....|....*....|.
gi 2024393550 1056 QAGLQASLEAEQKALEQDRERLDQEIQQLKQKIYESDGGQK 1096
Cdd:TIGR02168 864 LEELIEELESELEALLNERASLEEALALLRSELEELSEELR 904
|
|
| EnvC |
COG4942 |
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, ... |
608-765 |
7.07e-03 |
|
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 443969 [Multi-domain] Cd Length: 377 Bit Score: 40.13 E-value: 7.07e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 608 EFERQQREELEKLESKRKQIEEME---EKQRSDKAELVRMQQEVESQRKETEIVQ----LQIRKQEESLKRRSVHIESRL 680
Cdd:COG4942 73 ALEQELAALEAELAELEKEIAELRaelEAQKEELAELLRALYRLGRQPPLALLLSpedfLDAVRRLQYLKYLAPARREQA 152
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 681 KDLLAEKEKFEEERLREQqeielQKKKQQEEIFARVKEELQRLQelnhKEKAEKMQIFRELEKLKKEKDEQYIKLESEKK 760
Cdd:COG4942 153 EELRADLAELAALRAELE-----AERAELEALLAELEEERAALE----ALKAERQKLLARLEKELAELAAELAELQQEAE 223
|
....*
gi 2024393550 761 RIEEQ 765
Cdd:COG4942 224 ELEAL 228
|
|
| PTZ00121 |
PTZ00121 |
MAEBL; Provisional |
653-940 |
7.69e-03 |
|
MAEBL; Provisional
Pssm-ID: 173412 [Multi-domain] Cd Length: 2084 Bit Score: 40.89 E-value: 7.69e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 653 KETEIVQLQIRKQEESLKRRSVHIES--RLKDLLAEKEKFEEERLREQQEIELQKKKQQE---------EIFARVKEELQ 721
Cdd:PTZ00121 1043 KEKDIIDEDIDGNHEGKAEAKAHVGQdeGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEakktetgkaEEARKAEEAKK 1122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 722 RLQELNHKEKAEKMQIFRELEKLKKEKDEQYIKLEsekKRIEEQEREQVMLVAHLEEQLREKQVMIQLLKRGDVQRVEEE 801
Cdd:PTZ00121 1123 KAEDARKAEEARKAEDARKAEEARKAEDAKRVEIA---RKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDA 1199
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 802 KRDLEDIR-ESLLKVKEARSEGEENCEELEKAQHsfiEFKKKQLEQLTILEKDLVQQMDHLEKDIAHEKETLEYLKLAEE 880
Cdd:PTZ00121 1200 RKAEAARKaEEERKAEEARKAEDAKKAEAVKKAE---EAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEE 1276
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 881 EhvnlKKDDEnfgdaVFKAEEfdMVKLTEYRLQSKVRQLEYLKNNhlpalLEEKQRATEV 940
Cdd:PTZ00121 1277 A----RKADE-----LKKAEE--KKKADEAKKAEEKKKADEAKKK-----AEEAKKADEA 1320
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
666-819 |
8.21e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.59 E-value: 8.21e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 666 EESLKRRSVHIESRLKDLLAEKEKFEEERLREQQEIELQKKkqqEEIFAR--VKEELQRLQELNHKEKAEKMQIFRELEK 743
Cdd:pfam12128 599 EEELRERLDKAEEALQSAREKQAAAEEQLVQANGELEKASR---EETFARtaLKNARLDLRRLFDEKQSEKDKKNKALAE 675
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024393550 744 LKKEKDEQYIKLESEKKRIeeqEREQVMLVAHLEEQLREKQVMIQllkrGDVQRVEEEKRDLED-IRESLLKVKEAR 819
Cdd:pfam12128 676 RKDSANERLNSLEAQLKQL---DKKHQAWLEEQKEQKREARTEKQ----AYWQVVEGALDAQLAlLKAAIAARRSGA 745
|
|
| COG4372 |
COG4372 |
Uncharacterized protein, contains DUF3084 domain [Function unknown]; |
610-920 |
8.31e-03 |
|
Uncharacterized protein, contains DUF3084 domain [Function unknown];
Pssm-ID: 443500 [Multi-domain] Cd Length: 370 Bit Score: 39.89 E-value: 8.31e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 610 ERQQREELEKLESKRKQIEEMEEKQRSDKAELVRMQQEVESQRKETEIVQLQIRKQEESLKRRSVHIESRLKDLLAEKEk 689
Cdd:COG4372 30 SEQLRKALFELDKLQEELEQLREELEQAREELEQLEEELEQARSELEQLEEELEELNEQLQAAQAELAQAQEELESLQE- 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 690 feeerlreqqeielQKKKQQEEIfARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQYIKLESEKKRIEE----- 764
Cdd:COG4372 109 --------------EAEELQEEL-EELQKERQDLEQQRKQLEAQIAELQSEIAEREEELKELEEQLESLQEELAAleqel 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 765 QEREQVMLVAHLEEQLREKQVMIQLLKRGDVQRVEEEKRDLEDIRESLLKVKEARSEGEENCEELEKAQHSFIEFKKKQL 844
Cdd:COG4372 174 QALSEAEAEQALDELLKEANRNAEKEEELAEAEKLIESLPRELAEELLEAKDSLEAKLGLALSALLDALELEEDKEELLE 253
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024393550 845 EQLTILEKDLVQQMDHLEKDIAHEKETLEYLKLAEEEHVNLKKDDENFGDAVFKAEEFDMVKLTEYRLQSKVRQLE 920
Cdd:COG4372 254 EVILKEIEELELAILVEKDTEEEELEIAALELEALEEAALELKLLALLLNLAALSLIGALEDALLAALLELAKKLE 329
|
|
| DUF3584 |
pfam12128 |
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. ... |
702-1042 |
9.09e-03 |
|
Protein of unknown function (DUF3584); This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.
Pssm-ID: 432349 [Multi-domain] Cd Length: 1191 Bit Score: 40.21 E-value: 9.09e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 702 ELQKKKQQEEIFARVKEELQRLQELNHKekAEKMQI-FRELEKLKKEKDEQYIKLESEKKRIEEQEREQVMLVAHLEEQL 780
Cdd:pfam12128 215 KSRLNRQQVEHWIRDIQAIAGIMKIRPE--FTKLQQeFNTLESAELRLSHLHFGYKSDETLIASRQEERQETSAELNQLL 292
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 781 REKQVMIQllkrgdvQRVEEEKRDLEDIREsllKVKEARSEGEENCEELEKAQHSFIEFKKKQLEQLTILEKDLVQQMDH 860
Cdd:pfam12128 293 RTLDDQWK-------EKRDELNGELSAADA---AVAKDRSELEALEDQHGAFLDADIETAAADQEQLPSWQSELENLEER 362
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 861 LEK-DIAHEKETLEYlklaeeEHVNLKKDDENfgdavfKAEEFDMVKLTEYRLQSKVRQLEYLKNnHLPALleeKQRATE 939
Cdd:pfam12128 363 LKAlTGKHQDVTAKY------NRRRSKIKEQN------NRDIAGIKDKLAKIREARDRQLAVAED-DLQAL---ESELRE 426
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 940 VLDRGLLGLDNTLYQIEKEIEDKEEQLAQYRASTNQLQQlQETFEFTANVARQEEKVRKKEKEILQSREKQQREALEQAV 1019
Cdd:pfam12128 427 QLEAGKLEFNEEEYRLKSRLGELKLRLNQATATPELLLQ-LENFDERIERAREEQEAANAEVERLQSELRQARKRRDQAS 505
|
330 340
....*....|....*....|...
gi 2024393550 1020 AKLERRHSALQRRSTIDFEIEEQ 1042
Cdd:pfam12128 506 EALRQASRRLEERQSALDELELQ 528
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
900-1087 |
9.14e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 40.28 E-value: 9.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 900 EEFDMVKLTEYRLQSKVRQLEYLKnnHLPALLEEKQRATE---VLDRGLLGLDntLYQIEKEIEDKEEQLAQYRASTNQL 976
Cdd:COG4913 232 EHFDDLERAHEALEDAREQIELLE--PIRELAERYAAARErlaELEYLRAALR--LWFAQRRLELLEAELEELRAELARL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 977 QQLQETFEftANVARQEEKVRKKEKEILQS------REKQQREALEQAVAKLERRHSALQRR-STIDFEI-------EEQ 1042
Cdd:COG4913 308 EAELERLE--ARLDALREELDELEAQIRGNggdrleQLEREIERLERELEERERRRARLEALlAALGLPLpasaeefAAL 385
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 2024393550 1043 KQKLATLNNSCSEQAGL----QASLEAEQKALEQDRERLDQEIQQLKQK 1087
Cdd:COG4913 386 RAEAAALLEALEEELEAleeaLAEAEAALRDLRRELRELEAEIASLERR 434
|
|
| tolA_full |
TIGR02794 |
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the ... |
643-767 |
9.37e-03 |
|
TolA protein; TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274303 [Multi-domain] Cd Length: 346 Bit Score: 39.83 E-value: 9.37e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024393550 643 RMQQEVESQRKETEIVQLQIRKQEESLKRRSVHIESRLKDLLAEK---------EKFEEERLREQQEIELQKKKQQEEIF 713
Cdd:TIGR02794 54 RIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAaaekaakqaEQAAKQAEEKQKQAEEAKAKQAAEAK 133
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 2024393550 714 ARVKEELQRLQELNHKEKAEKMQIFRELEKLKKEKDEQYIKLESEKKRIEEQER 767
Cdd:TIGR02794 134 AKAEAEAERKAKEEAAKQAEEEAKAKAAAEAKKKAEEAKKKAEAEAKAKAEAEA 187
|
|
| |
