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Conserved domains on  [gi|2024496797|ref|XP_040525459|]
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UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X1 [Gallus gallus]

Protein Classification

UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase( domain architecture ID 13540367)

UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, also called O-linked N-acetylglucosamine transferase (OGT), is a glycosyltransferase family 41 protein containing tetratricopeptide (TPR) repeats that catalyzes the addition of nucleotide-activated sugars directly onto the polypeptide through O-glycosidic linkage with the hydroxyl of serine or threonine

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Glyco_transf_41 pfam13844
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ...
 476-1015 0e+00

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.


:

Pssm-ID: 404688  Cd Length: 543  Bit Score: 1167.17  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  476 VCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHSFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKASEGR 555
Cdd:pfam13844    1 VCDWTDYESRMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHDFRKAIAARHANLCLEKIQILHKPPYKFPKDLSLSGGR 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  556 LRIGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFVDLSQIPCNGKAADRIHQDGIHI 635
Cdd:pfam13844   81 LRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYALSPDDGTNFRSKIARESEHFVDLSQIPCNGKAADRIHADGIHI 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  636 LINMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDKETSPVEVAEQYSEKLAYMPNTFFIGDHANMFPHL 715
Cdd:pfam13844  161 LVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQYSEKLAYMPHTFFIGDHRQMFPHL 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  716 KKKAVIDFKSNG-HIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDS---GDSADSNAALSMPVIPMNTiAEAVIEMINR 791
Cdd:pfam13844  241 KERAIVTDKSDGtKVRDNVAVVNATDLKPLLEKTEVKDKVKEVVVVEttgNSRDSSKVEVVLPVIELPT-TEPIESMIQS 319

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  792 GQIQITINGFNISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAVVYCNFNQLYKIDPSTLQMWANILKRVPNSV 871
Cdd:pfam13844  320 GQIQTSVNGVVVQNGLATTQTNNKAATGEEVPSSIVVTTRQQYGLPDDAIVYCNFNQLYKIDPPTLEMWVNILKRVPNSV 399

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  872 LWLLRFPAVGEPNIQQYAQNLGLSQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLA 951
Cdd:pfam13844  400 LWLLRFPAVGEPNILATAQELGIPPGRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTLPGETLA 479

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024496797  952 SRVAASQLTCLGCLELIAKSRQEYEDIAVKLGTDLEYLKKIRGKVWKQRISSPLFNTKQYTMDL 1015
Cdd:pfam13844  480 SRVAASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVWKARTTSPLFNVKQYTQDL 543
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 190-457 1.89e-50

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 179.54  E-value: 1.89e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  190 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 269
Cdd:COG2956      7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDY 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  270 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 349
Cdd:COG2956     87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  350 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAfA 429
Cdd:COG2956    167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-D 245

                          250       260
                   ....*....|....*....|....*...
gi 2024496797  430 DAHSNLASIHKDSGNIPEAIASYRTALK 457
Cdd:COG2956    246 DLLLALADLLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
51-289 8.38e-37

Tetratricopeptide (TPR) repeat [General function prediction only];


:

Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 139.37  E-value: 8.38e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   51 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 130
Cdd:COG0457      4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  131 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 210
Cdd:COG0457     84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024496797  211 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 289
Cdd:COG0457    164 LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
 
Name Accession Description Interval E-value
Glyco_transf_41 pfam13844
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ...
 476-1015 0e+00

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.


Pssm-ID: 404688  Cd Length: 543  Bit Score: 1167.17  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  476 VCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHSFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKASEGR 555
Cdd:pfam13844    1 VCDWTDYESRMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHDFRKAIAARHANLCLEKIQILHKPPYKFPKDLSLSGGR 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  556 LRIGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFVDLSQIPCNGKAADRIHQDGIHI 635
Cdd:pfam13844   81 LRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYALSPDDGTNFRSKIARESEHFVDLSQIPCNGKAADRIHADGIHI 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  636 LINMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDKETSPVEVAEQYSEKLAYMPNTFFIGDHANMFPHL 715
Cdd:pfam13844  161 LVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQYSEKLAYMPHTFFIGDHRQMFPHL 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  716 KKKAVIDFKSNG-HIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDS---GDSADSNAALSMPVIPMNTiAEAVIEMINR 791
Cdd:pfam13844  241 KERAIVTDKSDGtKVRDNVAVVNATDLKPLLEKTEVKDKVKEVVVVEttgNSRDSSKVEVVLPVIELPT-TEPIESMIQS 319

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  792 GQIQITINGFNISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAVVYCNFNQLYKIDPSTLQMWANILKRVPNSV 871
Cdd:pfam13844  320 GQIQTSVNGVVVQNGLATTQTNNKAATGEEVPSSIVVTTRQQYGLPDDAIVYCNFNQLYKIDPPTLEMWVNILKRVPNSV 399

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  872 LWLLRFPAVGEPNIQQYAQNLGLSQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLA 951
Cdd:pfam13844  400 LWLLRFPAVGEPNILATAQELGIPPGRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTLPGETLA 479

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024496797  952 SRVAASQLTCLGCLELIAKSRQEYEDIAVKLGTDLEYLKKIRGKVWKQRISSPLFNTKQYTMDL 1015
Cdd:pfam13844  480 SRVAASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVWKARTTSPLFNVKQYTQDL 543
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 246-1026 0e+00

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 583.49  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  246 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPT 325
Cdd:COG3914      1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  326 HADSLNNLanikREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 405
Cdd:COG3914     81 LELAALLL----QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL 156

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  406 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 485
Cdd:COG3914    157 RRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRF 236

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  486 MKKLvsivaDQLEKNRLPSVHPHHSMLYPLSHSFRKAIAERHGNLCLDKinvlHKPPYEHPKDLKASEGRLRIGYVSSDF 565
Cdd:COG3914    237 EELL-----AALARGPSELSPFALLYLPDDDPAELLALARAWAQLVAAA----AAPELPPPPNPRDPDRKLRIGYVSADF 307

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  566 GNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDgTNFRVKVMAEANHFVDLSQIPcNGKAADRIHQDGIHILINMNGYTKG 645
Cdd:COG3914    308 RRHAVGYLLEPLLEHHDRSRFEIYAYSTGPDD-DALTQRLRAAADHWRDIPGLS-DEEAAELIRADGIDILVDLSGHTAG 385

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  646 ARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDKETSPVEVAEQYSEKLAYMPNTFFigdhanmfphlkkkavidfks 725
Cdd:COG3914    386 NRLGVFALRPAPVQVSWLGYPGTTGLPAIDYFIADPYVLPPGAEAYYSEKLVRLPGSYL--------------------- 444

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  726 nghiydnrivlngidlkafldslpdvkivkmkCPDSGDSAdsnaalsmPVIPmntiaeavieminrgqiqitingfnisn 805
Cdd:COG3914    445 --------------------------------CYQPNDRA--------PEVA---------------------------- 456

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  806 glattqinnkaatgeEVPrtiivtTRSQYGLPEDAVVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFP-AVGEPN 884
Cdd:COG3914    457 ---------------PLP------TRADLGLPEGAVVFGSFNNLYKITPEVFALWARILKAVPNSVLLLKGGGlPEARER 515

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  885 IQQYAQNLGLSQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGC 964
Cdd:COG3914    516 LRAAAAARGVDPDRLIFLPRLPRAEHLARYALADLFLDTFPYNGGTTTLEALWMGVPVVTLAGETFASRVGASLLTALGL 595

                          730       740       750       760       770       780
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024496797  965 LELIAKSRQEYEDIAVKLGTDLEYLKKIRGKVWKQRISSPLFNTKQYTMDLERLYLQMWDHY 1026
Cdd:COG3914    596 PELIATSEEEYVALAVALATDPELLAALRAKLRERRQTSPLFDTPRFARDLEAAYRQMWQRW 657
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 190-457 1.89e-50

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 179.54  E-value: 1.89e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  190 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 269
Cdd:COG2956      7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDY 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  270 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 349
Cdd:COG2956     87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  350 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAfA 429
Cdd:COG2956    167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-D 245

                          250       260
                   ....*....|....*....|....*...
gi 2024496797  430 DAHSNLASIHKDSGNIPEAIASYRTALK 457
Cdd:COG2956    246 DLLLALADLLERKEGLEAALALLERQLR 273
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 22-465 5.41e-41

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 163.33  E-value: 5.41e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   22 QGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE 101
Cdd:TIGR02917  228 AVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ 307

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  102 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 181
Cdd:TIGR02917  308 LGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLA 387

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  182 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 261
Cdd:TIGR02917  388 KATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASL 467

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  262 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQG 341
Cdd:TIGR02917  468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  342 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRA 421
Cdd:TIGR02917  548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....
gi 2024496797  422 IQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 465
Cdd:TIGR02917  628 LALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA 671
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
51-289 8.38e-37

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 139.37  E-value: 8.38e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   51 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 130
Cdd:COG0457      4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  131 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 210
Cdd:COG0457     84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024496797  211 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 289
Cdd:COG0457    164 LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 20-281 4.39e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 109.40  E-value: 4.39e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   20 SFQGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY 99
Cdd:TIGR02917  634 SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLY 713

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  100 KERGQLQEAIEHYRHALRLKPDfIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAC 179
Cdd:TIGR02917  714 LRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKH 792

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  180 YLKAIETQPNFAVAWSNLGCVFnAQGEIWLAIHHFEKAVTL---DPNFLDAYinlGNVLKEARIFDRAVAAYLRALSLSP 256
Cdd:TIGR02917  793 YQTVVKKAPDNAVVLNNLAWLY-LELKDPRALEYAERALKLapnIPAILDTL---GWLLVEKGEADRALPLLRKAVNIAP 868

                          250       260
                   ....*....|....*....|....*
gi 2024496797  257 NHAVVHGNLACVYYEQGLIDLAIDT 281
Cdd:TIGR02917  869 EAAAIRYHLALALLATGRKAEARKE 893
gliding_GltE NF033758
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ...
 214-512 1.01e-15

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.


Pssm-ID: 468174 [Multi-domain]  Cd Length: 411  Bit Score: 80.64  E-value: 1.01e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  214 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPnhavvhgnlacvyyeqglidlaidTYRRAIElqphfp 293
Cdd:NF033758    75 FKAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAALKKKP------------------------TLRQASE------ 124

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  294 daycNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA---------- 363
Cdd:NF033758   125 ----NLAVMAQNAGDVAGAVALYQDVLKRYPDDASSRARLAEIYRQTGDHDKAMELSRAALMRDPQSTTAlkvmmrsyld 200

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  364 ------------------------HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT 419
Cdd:NF033758   201 rkqlamaklvalravkidqndpelHHTVGLILLQEGDKDGARLQFKRALEVRADYVPSHVELAQLALDAEDYPGAEEHLR 280

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  420 RAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD-ERMKKLVSIVADQLE 498
Cdd:NF033758   281 RILQADGKNAAAHLNLGVAYKGQGQYDKAMQEYDEAEKLDPELAAIYLNRAIILHRVKDAPERAvELYKKYIAMAGGEVA 360

                          330
                   ....*....|....
gi 2024496797  499 knrLPSVHPHHSML 512
Cdd:NF033758   361 ---LNAEAPVFGLL 371
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 293-392 5.43e-13

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 70.27  E-value: 5.43e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  293 PDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 372
Cdd:NF033920   156 PLAYLRAAQDLEQTGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALA 235

                           90       100
                   ....*....|....*....|
gi 2024496797  373 QQGKLQEALMHYKEAIRISP 392
Cdd:NF033920   236 AQGCTAQARAAAECALALAP 255
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 167-357 1.41e-12

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 69.58  E-value: 1.41e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  167 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVL--KEA-RIFD 242
Cdd:cd24142     10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLGQLSggEEAlQYYE 89

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  243 RAVAAYLRALslspnhavvhgnlacvyyeQGLIDLAIDTYRRAIELQPHFPDAYCNLA-----NALKEKGSVAEAEECYN 317
Cdd:cd24142     90 KGIEILEEEL-------------------QALQAASAEAEEEAEELKRKLSSALCALAeiymtDLCDEPDAEQRCEELIT 150

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 2024496797  318 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 357
Cdd:cd24142    151 KALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELW 190
TPR_12 pfam13424
Tetratricopeptide repeat;
327-390 1.26e-11

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 61.25  E-value: 1.26e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024496797  327 ADSLNNLANIKREQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 390
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 101-462 2.74e-11

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 68.19  E-value: 2.74e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  101 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCvRSDLGNLLKAlGRleeakacY 180
Cdd:PRK11447   281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN-RDKWESLLKV-NR-------Y 351

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  181 LKAIEtQPNFAVAWSNLGcvfnaqgeiwLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 259
Cdd:PRK11447   352 WLLIQ-QGDAALKANNLA----------QAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPgNTN 420

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  260 VVHGnLACVYYEQG-------LIDL------AIDTYRRAIELqphfpDAYCNLANALKEKGSVAEAEECYNTALRLCPTH 326
Cdd:PRK11447   421 AVRG-LANLYRQQSpekalafIASLsasqrrSIDDIERSLQN-----DRLAQQAEALENQGKWAQAAELQRQRLALDPGS 494

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-------------------EFAAAHSN--------------------- 366
Cdd:PRK11447   495 VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPndpeqvyayglylsgsdrdRAALAHLNtlpraqwnsniqelaqrlqsd 574

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  367 ----LASVLQQQGKLQEA--LMHYKEA-IRISPTFADAYSNMGntlkemqDVQGALQCYTRAIQINPAFADAHSNLASIH 439
Cdd:PRK11447   575 qvleTANRLRDSGKEAEAeaLLRQQPPsTRIDLTLADWAQQRG-------DYAAARAAYQRVLTREPGNADARLGLIEVD 647

                          410       420
                   ....*....|....*....|...
gi 2024496797  440 KDSGNIPEAiasyRTALKLKPDF 462
Cdd:PRK11447   648 IAQGDLAAA----RAQLAKLPAT 666
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 8-381 5.94e-10

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 63.40  E-value: 5.94e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797    8 VADSTEPTKRMLsfqgLAELAHREYQAGDFEAAERHC---MQLWRQ--EPDNTGVLLL---LSSIHFQ------CRRLDR 73
Cdd:NF040586   383 ALESDDPEVRRL----LLDQVRYLYLRGDYESARDLAeraLERWRErlGPDDRQTLRLrfhLANALRSlgryeeARELDE 458

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   74 SA-------------HFSTLAikqnpllaeAYSNLGNVYKERGQLQEAIEHYRHALR-----LKPDfiDGYI-----NLA 130
Cdd:NF040586   459 DTlerqrrvlglgedHPHTLM---------TAGGLGADLRALGRFREALELDEETLErhrrvFGED--HPRTlraanNLA 527

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  131 AALVAAGDmegavqaYVSALQYNPDLYCVRSDLGNllkalgrleeakacylkaiETQPNFAVAWSNLGCVFNAQGEiwla 210
Cdd:NF040586   528 VSLRLLGD-------YREALELDREVLRRRRRVLG-------------------PDHPRTLLSANNLARDLRELGR---- 577

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  211 ihhFEKAVTLdpnfldayinlgnvLKEARifdravaAYLRALSLSPNHAVVHG---NLACVYYEQGLID----LAIDTYR 283
Cdd:NF040586   578 ---YAEALDL--------------LEEAL-------ERYREVLGGPDHPDTLRaakSLAVALRRAGRLEealeLAEDTYE 633

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  284 RAIELQ-PHFPD---AYCNLANALKEKG----SVAEAEECYNT-ALRLCPTHADSL---NNLANIKREQGNIEEAVRLYR 351
Cdd:NF040586   634 RYRRRFgPDHPDtlaAALSLANDLRALGdadeARELAREVLDRyRRVLGEDHPFTLacrNNLAVLLRALGDPEEARELAE 713

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|
gi 2024496797  352 KALEVFPE----------FAAAhsNLASVLQQQGKLQEAL 381
Cdd:NF040586   714 AALEGLRErlgpdhpytlAAAV--NLANDLAALGDLDAAL 751
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 81-154 1.12e-09

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 60.26  E-value: 1.12e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024496797   81 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 154
Cdd:NF033920   182 ATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255
TPR_1 pfam00515
Tetratricopeptide repeat;
89-122 2.11e-08

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 50.88  E-value: 2.11e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2024496797   89 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 122
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 89-122 8.06e-08

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 48.98  E-value: 8.06e-08
                            10        20        30
                    ....*....|....*....|....*....|....
gi 2024496797    89 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 122
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 266-358 2.17e-07

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 53.32  E-value: 2.17e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  266 ACVYYEQ-GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIE 344
Cdd:NF033920   162 AAQDLEQtGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTA 241

                           90
                   ....*....|....
gi 2024496797  345 EAVRLYRKALEVFP 358
Cdd:NF033920   242 QARAAAECALALAP 255
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 34-328 4.89e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 50.69  E-value: 4.89e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   34 AGDFEAAERHCMQLWRQEpdntgvllllssihfqcRRLDRSAHFSTLAikqnpllaeAYSNLGNVYKERGQLQEAIEHYR 113
Cdd:NF040586   533 LGDYREALELDREVLRRR-----------------RRVLGPDHPRTLL---------SANNLARDLRELGRYAEALDLLE 586

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  114 HALR------LKPDFIDGYI---NLAAALVAAGDMEGA-------VQAYVSALQ-YNPDLYCVRSDLGNLLKALGRLEEA 176
Cdd:NF040586   587 EALEryrevlGGPDHPDTLRaakSLAVALRRAGRLEEAlelaedtYERYRRRFGpDHPDTLAAALSLANDLRALGDADEA 666

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  177 kacyLKAIETqpnfavawsnlgcvfnaqgeiwlAIHHFEKAVTLD-PNFLDAYINLGNVLK------EARIFDRAVAAYL 249
Cdd:NF040586   667 ----RELARE-----------------------VLDRYRRVLGEDhPFTLACRNNLAVLLRalgdpeEARELAEAALEGL 719

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  250 RAlSLSPNH------AVvhgNLACVYYEQGLIDLAID--TYRRAIELQ-------PHFPD---AYCNLANALKEKGSVAE 311
Cdd:NF040586   720 RE-RLGPDHpytlaaAV---NLANDLAALGDLDAALGeeALERLRRLLgedlragPDHPDtlaCAANLALDLRATGRTEE 795

                          330       340
                   ....*....|....*....|..
gi 2024496797  312 AEECYNTAL-----RLCPTHAD 328
Cdd:NF040586   796 AEELRADTLarlrrVLGPDHPD 817
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 237-508 6.09e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 50.30  E-value: 6.09e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  237 EARIFDRAVAAYLRALsLSPNHA---VVHGNLACVY-----YEQGLiDLAIDTYRRAIELQPhfPD------AYCNLANA 302
Cdd:NF040586   496 EALELDEETLERHRRV-FGEDHPrtlRAANNLAVSLrllgdYREAL-ELDREVLRRRRRVLG--PDhprtllSANNLARD 571

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  303 LKEKGSVAEA----EECYNTALRLC--PTHADSLN---NLANIKREQGNIEEAVRL----YRKALEVF----PEFAAAHS 365
Cdd:NF040586   572 LRELGRYAEAldllEEALERYREVLggPDHPDTLRaakSLAVALRRAGRLEEALELaedtYERYRRRFgpdhPDTLAAAL 651

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  366 NLASVLQQQGKLQEALMHYKEAIRISP---------TFAdAYSNMGNTLKEMQDVQGALQCYTRAI-QINPAFADAH--- 432
Cdd:NF040586   652 SLANDLRALGDADEARELAREVLDRYRrvlgedhpfTLA-CRNNLAVLLRALGDPEEARELAEAALeGLRERLGPDHpyt 730

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  433 ----SNLASIHKDSGNIPEAIAS---------YRTALKLKPDFPD---AYCNLAHCLQIvcdwTDYDERMKKLVSIVADQ 496
Cdd:NF040586   731 laaaVNLANDLAALGDLDAALGEealerlrrlLGEDLRAGPDHPDtlaCAANLALDLRA----TGRTEEAEELRADTLAR 806

                          330
                   ....*....|..
gi 2024496797  497 LEKnRLPSVHPH 508
Cdd:NF040586   807 LRR-VLGPDHPD 817
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 327-360 2.26e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.05  E-value: 2.26e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 2024496797   327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 360
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 103-236 3.17e-05

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 45.43  E-value: 3.17e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  103 GQLQEAIEHYRHALRLKPDFID-GYI--NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAc 179
Cdd:PRK02603    49 GEYAEALENYEEALKLEEDPNDrSYIlyNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAG- 127

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2024496797  180 ylkaietQPNFAVAWsnlgcvFNAQGEIWlaihhfEKAVTLDPNfldAYINLGNVLK 236
Cdd:PRK02603   128 -------DQDEAEAL------FDKAAEYW------KQAIRLAPN---NYIEAQNWLK 162
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 77-288 1.33e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 45.31  E-value: 1.33e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   77 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDfiDG---YINLAAAlvaagdMEG--AVQAY---VS 148
Cdd:cd24142     22 FLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD--GGyekYLYLGQL------SGGeeALQYYekgIE 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  149 ALQynpdlycvrsdlgNLLKALGRLEEAKACYLKAIETQpnfavawsnLGCVFNAQGEIWLAIHHFEKavtldpnflDAy 228
Cdd:cd24142     94 ILE-------------EELQALQAASAEAEEEAEELKRK---------LSSALCALAEIYMTDLCDEP---------DA- 141

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024496797  229 inlgnvlkEARifdraVAAYL-RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 288
Cdd:cd24142    142 --------EQR-----CEELItKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLEL 189
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 210-290 3.93e-04

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 43.31  E-value: 3.93e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  210 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 289
Cdd:NF033920   175 ALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALA 254


                   .
gi 2024496797  290 P 290
Cdd:NF033920   255 P 255
 
Name Accession Description Interval E-value
Glyco_transf_41 pfam13844
Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked ...
 476-1015 0e+00

Glycosyl transferase family 41; This family of glycosyltransferases includes O-linked beta-N-acetylglucosamine (O-GlcNAc) transferase, an enzyme which catalyzes the addition of O-GlcNAc to serine and threonine residues. In addition to its function as an O-GlcNAc transferase, human OGT, also appears to proteolytically cleave the epigenetic cell-cycle regulator HCF-1.


Pssm-ID: 404688  Cd Length: 543  Bit Score: 1167.17  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  476 VCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHSFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKASEGR 555
Cdd:pfam13844    1 VCDWTDYESRMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHDFRKAIAARHANLCLEKIQILHKPPYKFPKDLSLSGGR 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  556 LRIGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMAEANHFVDLSQIPCNGKAADRIHQDGIHI 635
Cdd:pfam13844   81 LRIGYVSSDFGNHPTSHLMQSIPGFHDREKVEVFCYALSPDDGTNFRSKIARESEHFVDLSQIPCNGKAADRIHADGIHI 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  636 LINMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDKETSPVEVAEQYSEKLAYMPNTFFIGDHANMFPHL 715
Cdd:pfam13844  161 LVNMNGYTKGARNEIFALRPAPIQVMWLGYPGTSGASFMDYIITDAVTSPLELADQYSEKLAYMPHTFFIGDHRQMFPHL 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  716 KKKAVIDFKSNG-HIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDS---GDSADSNAALSMPVIPMNTiAEAVIEMINR 791
Cdd:pfam13844  241 KERAIVTDKSDGtKVRDNVAVVNATDLKPLLEKTEVKDKVKEVVVVEttgNSRDSSKVEVVLPVIELPT-TEPIESMIQS 319

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  792 GQIQITINGFNISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAVVYCNFNQLYKIDPSTLQMWANILKRVPNSV 871
Cdd:pfam13844  320 GQIQTSVNGVVVQNGLATTQTNNKAATGEEVPSSIVVTTRQQYGLPDDAIVYCNFNQLYKIDPPTLEMWVNILKRVPNSV 399

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  872 LWLLRFPAVGEPNIQQYAQNLGLSQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLA 951
Cdd:pfam13844  400 LWLLRFPAVGEPNILATAQELGIPPGRIVFSNVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTLPGETLA 479

                          490       500       510       520       530       540
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024496797  952 SRVAASQLTCLGCLELIAKSRQEYEDIAVKLGTDLEYLKKIRGKVWKQRISSPLFNTKQYTMDL 1015
Cdd:pfam13844  480 SRVAASQLATLGCPELIAKSRQEYEDIAVKLGTDREYLKAIRAKVWKARTTSPLFNVKQYTQDL 543
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 246-1026 0e+00

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 583.49  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  246 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPT 325
Cdd:COG3914      1 AAAAALLALAALAAAALLAAAAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  326 HADSLNNLanikREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 405
Cdd:COG3914     81 LELAALLL----QALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLGEAL 156

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  406 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDER 485
Cdd:COG3914    157 RRLGRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELDPDNADAHSNLLFALRQACDWEVYDRF 236

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  486 MKKLvsivaDQLEKNRLPSVHPHHSMLYPLSHSFRKAIAERHGNLCLDKinvlHKPPYEHPKDLKASEGRLRIGYVSSDF 565
Cdd:COG3914    237 EELL-----AALARGPSELSPFALLYLPDDDPAELLALARAWAQLVAAA----AAPELPPPPNPRDPDRKLRIGYVSADF 307

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  566 GNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDgTNFRVKVMAEANHFVDLSQIPcNGKAADRIHQDGIHILINMNGYTKG 645
Cdd:COG3914    308 RRHAVGYLLEPLLEHHDRSRFEIYAYSTGPDD-DALTQRLRAAADHWRDIPGLS-DEEAAELIRADGIDILVDLSGHTAG 385

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  646 ARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDKETSPVEVAEQYSEKLAYMPNTFFigdhanmfphlkkkavidfks 725
Cdd:COG3914    386 NRLGVFALRPAPVQVSWLGYPGTTGLPAIDYFIADPYVLPPGAEAYYSEKLVRLPGSYL--------------------- 444

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  726 nghiydnrivlngidlkafldslpdvkivkmkCPDSGDSAdsnaalsmPVIPmntiaeavieminrgqiqitingfnisn 805
Cdd:COG3914    445 --------------------------------CYQPNDRA--------PEVA---------------------------- 456

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  806 glattqinnkaatgeEVPrtiivtTRSQYGLPEDAVVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFP-AVGEPN 884
Cdd:COG3914    457 ---------------PLP------TRADLGLPEGAVVFGSFNNLYKITPEVFALWARILKAVPNSVLLLKGGGlPEARER 515

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  885 IQQYAQNLGLSQNRIIFSPVAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGC 964
Cdd:COG3914    516 LRAAAAARGVDPDRLIFLPRLPRAEHLARYALADLFLDTFPYNGGTTTLEALWMGVPVVTLAGETFASRVGASLLTALGL 595

                          730       740       750       760       770       780
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024496797  965 LELIAKSRQEYEDIAVKLGTDLEYLKKIRGKVWKQRISSPLFNTKQYTMDLERLYLQMWDHY 1026
Cdd:COG3914    596 PELIATSEEEYVALAVALATDPELLAALRAKLRERRQTSPLFDTPRFARDLEAAYRQMWQRW 657
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 190-457 1.89e-50

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 179.54  E-value: 1.89e-50
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  190 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 269
Cdd:COG2956      7 AALGWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDY 86

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  270 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRL 349
Cdd:COG2956     87 LKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEA 166

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  350 YRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAfA 429
Cdd:COG2956    167 LEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-D 245

                          250       260
                   ....*....|....*....|....*...
gi 2024496797  430 DAHSNLASIHKDSGNIPEAIASYRTALK 457
Cdd:COG2956    246 DLLLALADLLERKEGLEAALALLERQLR 273
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 163-425 2.23e-47

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 170.68  E-value: 2.23e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  163 LGNLLKAL-----GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 237
Cdd:COG2956      9 LGWYFKGLnyllnGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLK 88

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  238 ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYN 317
Cdd:COG2956     89 AGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALE 168

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  318 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTfADA 397
Cdd:COG2956    169 KALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDL 247

                          250       260
                   ....*....|....*....|....*...
gi 2024496797  398 YSNMGNTLKEMQDVQGALQCYTRAIQIN 425
Cdd:COG2956    248 LLALADLLERKEGLEAALALLERQLRRH 275
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 241-500 3.07e-47

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 170.29  E-value: 3.07e-47
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  241 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTAL 320
Cdd:COG2956     24 PDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLL 103

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  321 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 400
Cdd:COG2956    104 ELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLL 183

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  401 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDfPDAYCNLAHCLQivcdwt 480
Cdd:COG2956    184 LAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALADLLE------ 256

                          250       260
                   ....*....|....*....|
gi 2024496797  481 dYDERMKKLVSIVADQLEKN 500
Cdd:COG2956    257 -RKEGLEAALALLERQLRRH 275
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
286-466 1.35e-45

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 164.41  E-value: 1.35e-45
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  286 IELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 365
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  366 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 445
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180
                   ....*....|....*....|.
gi 2024496797  446 PEAIASYRTALKLKPDFPDAY 466
Cdd:COG0457    161 EEALELLEKLEAAALAALLAA 181
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 125-389 1.53e-45

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 165.29  E-value: 1.53e-45
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  125 GYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 204
Cdd:COG2956     10 GWYFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKA 89

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  205 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR 284
Cdd:COG2956     90 GLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEK 169

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  285 AIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEfAAAH 364
Cdd:COG2956    170 ALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLL 248

                          250       260
                   ....*....|....*....|....*
gi 2024496797  365 SNLASVLQQQGKLQEALMHYKEAIR 389
Cdd:COG2956    249 LALADLLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
218-389 5.13e-45

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 162.87  E-value: 5.13e-45
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  218 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC 297
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  298 NLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL 377
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170
                   ....*....|..
gi 2024496797  378 QEALMHYKEAIR 389
Cdd:COG0457    161 EEALELLEKLEA 172
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
252-458 5.28e-45

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 162.87  E-value: 5.28e-45
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  252 LSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLN 331
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  332 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDV 411
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*..
gi 2024496797  412 QGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 458
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQAL 207
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 59-321 6.61e-45

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 163.75  E-value: 6.61e-45
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   59 LLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGD 138
Cdd:COG2956     12 YFKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGL 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  139 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 218
Cdd:COG2956     92 LDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKAL 171

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  219 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHfPDAYCN 298
Cdd:COG2956    172 KLDPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLA 250

                          250       260
                   ....*....|....*....|...
gi 2024496797  299 LANALKEKGSVAEAEECYNTALR 321
Cdd:COG2956    251 LADLLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
184-389 1.06e-44

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 162.10  E-value: 1.06e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  184 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG 263
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  264 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNI 343
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|....*.
gi 2024496797  344 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 389
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQA 206
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 95-355 2.18e-44

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 162.21  E-value: 2.18e-44
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   95 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE 174
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  175 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 254
Cdd:COG2956     94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  255 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPThADSLNNLA 334
Cdd:COG2956    174 DPDCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPS-DDLLLALA 252

                          250       260
                   ....*....|....*....|.
gi 2024496797  335 NIKREQGNIEEAVRLYRKALE 355
Cdd:COG2956    253 DLLERKEGLEAALALLERQLR 273
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
150-390 1.83e-43

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 158.25  E-value: 1.83e-43
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  150 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYI 229
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  230 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSV 309
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  310 AEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 389
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALAL 240


                   .
gi 2024496797  390 I 390
Cdd:COG0457    241 Y 241
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
320-474 1.81e-42

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 155.55  E-value: 1.81e-42
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  320 LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 399
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024496797  400 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 474
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALE 155
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
82-314 3.95e-41

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 151.70  E-value: 3.95e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   82 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRS 161
Cdd:COG0457      1 LELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALN 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  162 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 241
Cdd:COG0457     81 NLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRY 160

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024496797  242 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEE 314
Cdd:COG0457    161 EEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLAL 233
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 22-465 5.41e-41

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 163.33  E-value: 5.41e-41
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   22 QGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE 101
Cdd:TIGR02917  228 AVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQ 307

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  102 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 181
Cdd:TIGR02917  308 LGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLA 387

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  182 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV 261
Cdd:TIGR02917  388 KATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASL 467

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  262 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQG 341
Cdd:TIGR02917  468 HNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTG 547

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  342 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRA 421
Cdd:TIGR02917  548 NEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKL 627

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....
gi 2024496797  422 IQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 465
Cdd:TIGR02917  628 LALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEA 671
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 269-502 1.18e-40

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 151.42  E-value: 1.18e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  269 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 348
Cdd:COG2956     18 YLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEE 97

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  349 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 428
Cdd:COG2956     98 LLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDC 177

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024496797  429 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRL 502
Cdd:COG2956    178 ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLLAL 251
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 31-460 2.18e-40

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 161.40  E-value: 2.18e-40
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   31 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIE 110
Cdd:TIGR02917  305 EYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAE 384

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  111 HYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLycVRSDLGNLLKALGRLEEAKAcyLKAIET---- 186
Cdd:TIGR02917  385 YLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPEL--GRADLLLILSYLRSGQFDKA--LAAAKKlekk 460

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  187 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV-LKEARIfDRAVAAYLRALSLSPNHAVVHGNL 265
Cdd:TIGR02917  461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIdIQEGNP-DDAIQRFEKVLTIDPKNLRAILAL 539

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  266 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEE 345
Cdd:TIGR02917  540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNK 619

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  346 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 425
Cdd:TIGR02917  620 AVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH 699

                          410       420       430
                   ....*....|....*....|....*....|....*
gi 2024496797  426 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 460
Cdd:TIGR02917  700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
51-289 8.38e-37

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 139.37  E-value: 8.38e-37
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   51 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 130
Cdd:COG0457      4 DPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLG 83

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  131 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 210
Cdd:COG0457     84 LALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEA 163

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024496797  211 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 289
Cdd:COG0457    164 LELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLALRLAALALYQ 242
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 27-471 8.32e-34

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 140.60  E-value: 8.32e-34
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   27 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLgnVYKERGQ 104
Cdd:TIGR02917  199 KGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPnsPLAHYLKAL--VDFQKKN 276

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  105 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 184
Cdd:TIGR02917  277 YEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPAL 356

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  185 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGnVLK----EARifdRAVAAYLRALSLSPNHAV 260
Cdd:TIGR02917  357 GLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLG-ISKlsqgDPS---EAIADLETAAQLDPELGR 432

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  261 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQ 340
Cdd:TIGR02917  433 ADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQE 512

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  341 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTR 420
Cdd:TIGR02917  513 GNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNE 592

                          410       420       430       440       450
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2024496797  421 AIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 471
Cdd:TIGR02917  593 AADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLAD 643
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 51-450 1.22e-33

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 140.22  E-value: 1.22e-33
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   51 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 130
Cdd:TIGR02917  495 EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALA 574

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  131 AALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLA 210
Cdd:TIGR02917  575 QYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKA 654

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  211 IHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 290
Cdd:TIGR02917  655 ITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP 734

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  291 HfPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 370
Cdd:TIGR02917  735 S-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWL 813

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  371 LQQQgKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA 450
Cdd:TIGR02917  814 YLEL-KDPRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 19-496 3.05e-32

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 135.60  E-value: 3.05e-32
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   19 LSFQGLAELAhreyqAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNV 98
Cdd:TIGR02917  128 LALRGLAYLG-----LGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDL 202

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   99 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDlycvrSDLGNLLKAL-----GRL 173
Cdd:TIGR02917  203 LLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPN-----SPLAHYLKALvdfqkKNY 277

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  174 EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 253
Cdd:TIGR02917  278 EDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALG 357

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  254 LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCP--THADSLN 331
Cdd:TIGR02917  358 LDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPelGRADLLL 437

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  332 NLANIKREQ--------------------------------GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 379
Cdd:TIGR02917  438 ILSYLRSGQfdkalaaakklekkqpdnaslhnllgaiylgkGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  380 ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 459
Cdd:TIGR02917  518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597

                          490       500       510
                   ....*....|....*....|....*....|....*..
gi 2024496797  460 PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 496
Cdd:TIGR02917  598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS 634
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 299-470 1.31e-30

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 122.15  E-value: 1.31e-30
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  299 LANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQ 378
Cdd:COG2956     14 KGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLD 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  379 EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 458
Cdd:COG2956     94 RAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKL 173

                          170
                   ....*....|..
gi 2024496797  459 KPDFPDAYCNLA 470
Cdd:COG2956    174 DPDCARALLLLA 185
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 81-470 2.37e-28

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 123.27  E-value: 2.37e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   81 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-------PDFIDGYI---------------------NLAAA 132
Cdd:TIGR02917   48 ALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGypknqvlPLLARAYLlqgkfqqvldelpgktllddeGAAEL 127

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  133 LVAAGD-------MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 205
Cdd:TIGR02917  128 LALRGLaylglgqLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLG 207

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  206 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAvAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRR 284
Cdd:TIGR02917  208 NIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEA-EKHADALLKKaPNSPLAHYLKALVDFQKKNYEDARETLQD 286

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  285 AIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 364
Cdd:TIGR02917  287 ALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAAL 366

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  365 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA------------- 431
Cdd:TIGR02917  367 SLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRAdlllilsylrsgq 446

                          410       420       430       440       450       460
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  432 ---------------------HSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 470
Cdd:TIGR02917  447 fdkalaaakklekkqpdnaslHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLA 506
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 327-462 2.47e-28

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 111.05  E-value: 2.47e-28
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 406
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2024496797  407 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 462
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 89-470 1.45e-27

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 120.57  E-value: 1.45e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   89 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 168
Cdd:TIGR02917   22 PEELIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYL 101

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  169 ALGRLEEAKAcYLKAIETQPN--FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 246
Cdd:TIGR02917  102 LQGKFQQVLD-ELPGKTLLDDegAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARA 180

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  247 AYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTH 326
Cdd:TIGR02917  181 LIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNS 260

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 406
Cdd:TIGR02917  261 PLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQL 340

                          330       340       350       360       370       380
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024496797  407 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 470
Cdd:TIGR02917  341 RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLG 404
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
32-193 1.76e-27

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 112.41  E-value: 1.76e-27
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   32 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH 111
Cdd:COG0457     19 RRLGRYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALED 98

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  112 YRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFA 191
Cdd:COG0457     99 YDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAAL 178


                   ..
gi 2024496797  192 VA 193
Cdd:COG0457    179 LA 180
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 265-392 1.26e-26

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 106.04  E-value: 1.26e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  265 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIE 344
Cdd:COG4783     10 LAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYD 89

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 2024496797  345 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 392
Cdd:COG4783     90 EALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDP 137
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 225-360 4.41e-26

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 104.50  E-value: 4.41e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  225 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK 304
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2024496797  305 EKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 360
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 162-292 5.30e-26

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 104.50  E-value: 5.30e-26
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  162 DLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 241
Cdd:COG4783      9 ALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDY 88

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2024496797  242 DRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 292
Cdd:COG4783     89 DEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 294-428 2.06e-25

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 102.58  E-value: 2.06e-25
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  294 DAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 373
Cdd:COG4783      5 EALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLK 84

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2024496797  374 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 428
Cdd:COG4783     85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 17-257 1.50e-24

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 110.08  E-value: 1.50e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   17 RMLSFQGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLG 96
Cdd:COG3914     74 LLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALNPDFAEAYLNLG 153

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   97 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINlaaalvaagdmegavqayvsalqynpdlycvrsdLGNLLKALGRLEEA 176
Cdd:COG3914    154 EALRRLGRLEEAIAALRRALELDPDNAEALNN----------------------------------LGNALQDLGRLEEA 199

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  177 KACYLKAIETQPNFAVAWSNL------GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYIN---LGNVLKEARIFDRAVA- 246
Cdd:COG3914    200 IAAYRRALELDPDNADAHSNLlfalrqACDWEVYDRFEELLAALARGPSELSPFALLYLPdddPAELLALARAWAQLVAa 279

                          250
                   ....*....|.
gi 2024496797  247 AYLRALSLSPN 257
Cdd:COG3914    280 AAAPELPPPPN 290
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 20-281 4.39e-24

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 109.40  E-value: 4.39e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   20 SFQGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVY 99
Cdd:TIGR02917  634 SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLY 713

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  100 KERGQLQEAIEHYRHALRLKPDfIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAC 179
Cdd:TIGR02917  714 LRQKDYPAAIQAYRKALKRAPS-SQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKH 792

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  180 YLKAIETQPNFAVAWSNLGCVFnAQGEIWLAIHHFEKAVTL---DPNFLDAYinlGNVLKEARIFDRAVAAYLRALSLSP 256
Cdd:TIGR02917  793 YQTVVKKAPDNAVVLNNLAWLY-LELKDPRALEYAERALKLapnIPAILDTL---GWLLVEKGEADRALPLLRKAVNIAP 868

                          250       260
                   ....*....|....*....|....*
gi 2024496797  257 NHAVVHGNLACVYYEQGLIDLAIDT 281
Cdd:TIGR02917  869 EAAAIRYHLALALLATGRKAEARKE 893
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 89-224 7.49e-24

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 98.34  E-value: 7.49e-24
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   89 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 168
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2024496797  169 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 224
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
213-389 2.10e-23

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 99.60  E-value: 2.10e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  213 HFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLsPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 292
Cdd:COG4785     28 ALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDL 106

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  293 PDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL----- 367
Cdd:COG4785    107 AEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLylaer 186

                          170       180       190
                   ....*....|....*....|....*....|....*..
gi 2024496797  368 ---------------ASVLQQQGKLQEALMHYKEAIR 389
Cdd:COG4785    187 kldpekalallledwATAYLLQGDTEEARELFKLALA 223
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
126-355 6.14e-23

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 98.45  E-value: 6.14e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  126 YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE------TQPNFAVAWSNLGC 199
Cdd:COG4785      2 YALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAEridralALPDLAQLYYERGV 81

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  200 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 279
Cdd:COG4785     82 AYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAI 161

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2024496797  280 DTYRRAIELQPHFPDAYCNLANALKEKGsvaeaeecYNTALRLCPTHADSLNNLanikreQGNIEEAVRLYRKALE 355
Cdd:COG4785    162 ADLEKALELDPNDPERALWLYLAERKLD--------PEKALALLLEDWATAYLL------QGDTEEARELFKLALA 223
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 243-363 8.17e-23

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 95.07  E-value: 8.17e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  243 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRL 322
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 2024496797  323 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 363
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA 121
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 278-398 8.25e-23

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 95.07  E-value: 8.25e-23
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  278 AIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 357
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|.
gi 2024496797  358 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY 398
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 191-326 1.37e-22

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 94.49  E-value: 1.37e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  191 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY 270
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2024496797  271 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTH 326
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
295-498 1.45e-22

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 97.29  E-value: 1.45e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  295 AYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF------PEFAAAHSNLA 368
Cdd:COG4785      1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIdralalPDLAQLYYERG 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  369 SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA 448
Cdd:COG4785     81 VAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELA 160

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|
gi 2024496797  449 IASYRTALKLKPDFPDAYCNLAHCLQIVcdwtDYDERMKKLVSIVADQLE 498
Cdd:COG4785    161 IADLEKALELDPNDPERALWLYLAERKL----DPEKALALLLEDWATAYL 206
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 210-328 4.29e-22

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 92.76  E-value: 4.29e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  210 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 289
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 2024496797  290 PHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHAD 328
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAP 120
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 311-438 6.83e-22

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 92.38  E-value: 6.83e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  311 EAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 390
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 2024496797  391 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 438
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPARLLEASI 128
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 345-466 8.96e-22

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 91.99  E-value: 8.96e-22
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  345 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 424
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 2024496797  425 NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY 466
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 24-155 1.22e-21

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 91.79  E-value: 1.22e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   24 LAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 103
Cdd:COG4783      7 LYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAG 86

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2024496797  104 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 155
Cdd:COG4783     87 DYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPD 138
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 89-487 4.88e-21

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 98.90  E-value: 4.88e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   89 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIdGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 168
Cdd:TIGR00990  127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  169 ALGRLEEA---------------------------KACYLKAIE----TQPNFAVAWS--NLGCVFNAQgeiwLAIHHFE 215
Cdd:TIGR00990  206 GLGKYADAlldltasciidgfrneqsaqaverllkKFAESKAKEiletKPENLPSVTFvgNYLQSFRPK----PRPAGLE 281

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  216 KAVTLDPNFLDAYINLGNVLKEARI---FDRAVAAYLRALS---LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 289
Cdd:TIGR00990  282 DSNELDEETGNGQLQLGLKSPESKAdesYEEAARAFEKALDlgkLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  290 PHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 369
Cdd:TIGR00990  362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  370 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDS------- 442
Cdd:TIGR00990  442 TQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKAlalfqwk 521

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|....*
gi 2024496797  443 GNIPEAIASYRTALKLKPDFPDAYCNLAhclQIVCDWTDYDERMK 487
Cdd:TIGR00990  522 QDFIEAENLCEKALIIDPECDIAVATMA---QLLLQQGDVDEALK 563
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 361-496 7.78e-21

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 89.48  E-value: 7.78e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  361 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK 440
Cdd:COG4783      4 AEALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALL 83

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*.
gi 2024496797  441 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 496
Cdd:COG4783     84 KAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 57-190 9.53e-21

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 89.48  E-value: 9.53e-21
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   57 VLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA 136
Cdd:COG4783      6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKA 85

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....
gi 2024496797  137 GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 190
Cdd:COG4783     86 GDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKALELDPDD 139
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
84-246 1.00e-20

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 91.90  E-value: 1.00e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   84 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDL 163
Cdd:COG4785     68 ALPDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNR 147

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  164 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLgcvFNAQGEIwlaihHFEKAV-TLDPNFLDAYINLGNVLKEARIFD 242
Cdd:COG4785    148 GIALYYLGRYELAIADLEKALELDPNDPERALWL---YLAERKL-----DPEKALaLLLEDWATAYLLQGDTEEARELFK 219


                   ....
gi 2024496797  243 RAVA 246
Cdd:COG4785    220 LALA 223
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 81-191 1.08e-20

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 88.91  E-value: 1.08e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   81 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 160
Cdd:COG4235      9 ALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEAL 88

                           90       100       110
                   ....*....|....*....|....*....|.
gi 2024496797  161 SDLGNLLKALGRLEEAKACYLKAIETQPNFA 191
Cdd:COG4235     89 YLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
268-359 7.93e-20

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 85.22  E-value: 7.93e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  268 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEEcYNTALRLCPTHADSLNNLANIKREQGNIEEAV 347
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|..
gi 2024496797  348 RLYRKALEVFPE 359
Cdd:COG3063     80 AYLERALELDPS 91
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 22-380 8.48e-20

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 95.54  E-value: 8.48e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   22 QGLAELAHREyqaGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE 101
Cdd:TIGR02917  537 LALAGLYLRT---GNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLA 613

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  102 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYl 181
Cdd:TIGR02917  614 AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIA- 692

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  182 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN----------------------FLDAYIN-------- 230
Cdd:TIGR02917  693 KSLQKQhPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSsqnaiklhrallasgntaeavkTLEAWLKthpndavl 772

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  231 ---LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDlAIDTYRRAIELQPHFPdaycnlanalkekg 307
Cdd:TIGR02917  773 rtaLAELYLAQKDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLELKDPR-ALEYAERALKLAPNIP-------------- 837

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024496797  308 svaeaeecyntalrlcpthaDSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 380
Cdd:TIGR02917  838 --------------------AILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEA 890
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 175-296 9.05e-20

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 86.21  E-value: 9.05e-20
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  175 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 254
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 2024496797  255 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAY 296
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPAR 122
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 220-358 1.34e-19

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 86.55  E-value: 1.34e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  220 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 299
Cdd:COG5010     15 LLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNL 94

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*....
gi 2024496797  300 ANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 358
Cdd:COG5010     95 ALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 241-392 1.96e-19

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 86.17  E-value: 1.96e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  241 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTAL 320
Cdd:COG5010      2 RALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQAL 81

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024496797  321 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 392
Cdd:COG5010     82 QLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
336-427 8.85e-19

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 82.14  E-value: 8.85e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  336 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMhYKEAIRISPTFADAYSNMGNTLKEMQDVQGAL 415
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|..
gi 2024496797  416 QCYTRAIQINPA 427
Cdd:COG3063     80 AYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 104-256 2.37e-18

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 83.09  E-value: 2.37e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  104 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 183
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024496797  184 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 256
Cdd:COG5010     81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 107-223 4.04e-18

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 81.59  E-value: 4.04e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  107 EAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 186
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 2024496797  187 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 223
Cdd:COG4235     81 DPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPA 117
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
370-461 5.41e-18

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 79.83  E-value: 5.41e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  370 VLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQcYTRAIQINPAFADAHSNLASIHKDSGNIPEAI 449
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|..
gi 2024496797  450 ASYRTALKLKPD 461
Cdd:COG3063     80 AYLERALELDPS 91
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 277-426 5.70e-18

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 81.93  E-value: 5.70e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  277 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 356
Cdd:COG5010      4 LEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQL 83

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  357 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 426
Cdd:COG5010     84 DPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
220-457 7.04e-18

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 83.81  E-value: 7.04e-18
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  220 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELqPHFPDAYCNL 299
Cdd:COG4785      1 LYALALALLLALALAAAAASKAAILLAALLFAAVLALAIALADLALALAAAALAAAALAAERIDRALAL-PDLAQLYYER 79

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  300 ANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 379
Cdd:COG4785     80 GVAYDSLGDYDLAIADFDQALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYEL 159

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024496797  380 ALMHYKEAIRISPTFADAYSNMGNTLKEmQDVQGALQCYTRAIQINpafadahsnlasiHKDSGNIPEAIASYRTALK 457
Cdd:COG4785    160 AIADLEKALELDPNDPERALWLYLAERK-LDPEKALALLLEDWATA-------------YLLQGDTEEARELFKLALA 223
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 344-460 1.41e-17

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 80.77  E-value: 1.41e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  344 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ 423
Cdd:COG5010     37 TKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALA 116

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 2024496797  424 INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 460
Cdd:COG5010    117 LSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 166-290 1.65e-17

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 80.77  E-value: 1.65e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  166 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 245
Cdd:COG5010     29 AALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAK 108

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 2024496797  246 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 290
Cdd:COG5010    109 EYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
200-290 2.97e-17

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 77.90  E-value: 2.97e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  200 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVaAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAI 279
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|.
gi 2024496797  280 DTYRRAIELQP 290
Cdd:COG3063     80 AYLERALELDP 90
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 70-188 6.56e-17

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 78.85  E-value: 6.56e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   70 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 149
Cdd:COG5010     35 NNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKA 114

                           90       100       110
                   ....*....|....*....|....*....|....*....
gi 2024496797  150 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 188
Cdd:COG5010    115 LALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 142-259 9.08e-17

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 77.74  E-value: 9.08e-17
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  142 AVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 221
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALD 81

                           90       100       110
                   ....*....|....*....|....*....|....*...
gi 2024496797  222 PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 259
Cdd:COG4235     82 PDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADA 119
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
98-189 2.78e-16

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 75.21  E-value: 2.78e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   98 VYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQaYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK 177
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|..
gi 2024496797  178 ACYLKAIETQPN 189
Cdd:COG3063     80 AYLERALELDPS 91
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
50-218 3.13e-16

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 78.80  E-value: 3.13e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   50 QEPDNTGVLLLLSSIHFQCRRLDRS-AHFSTlAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYIN 128
Cdd:COG4785     68 ALPDLAQLYYERGVAYDSLGDYDLAiADFDQ-ALELDPDLAEAYNNRGLAYLLLGDYDAALEDFDRALELDPDYAYAYLN 146

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  129 LAAALVAAGDMEGAVQAYVSALQYNPDLyCVRSDLGNLLKALGRLEEAKACYLKAIETQpnfavawsnlgcvFNAQGEIW 208
Cdd:COG4785    147 RGIALYYLGRYELAIADLEKALELDPND-PERALWLYLAERKLDPEKALALLLEDWATA-------------YLLQGDTE 212

                          170
                   ....*....|
gi 2024496797  209 LAIHHFEKAV 218
Cdd:COG4785    213 EARELFKLAL 222
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 266-494 4.03e-16

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 83.59  E-value: 4.03e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  266 ACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEE 345
Cdd:TIGR02917   29 AKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQ 108

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  346 AVRLYRKA-LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI 424
Cdd:TIGR02917  109 VLDELPGKtLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTA 188

                          170       180       190       200       210       220       230
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  425 NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAhclQIVCDWTDYDERMKKLVSIVA 494
Cdd:TIGR02917  189 DPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALA---TILIEAGEFEEAEKHADALLK 255
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
166-257 5.29e-16

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 74.44  E-value: 5.29e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  166 LLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIhHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAV 245
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAI-ALEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|..
gi 2024496797  246 AAYLRALSLSPN 257
Cdd:COG3063     80 AYLERALELDPS 91
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 379-470 7.44e-16

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 75.04  E-value: 7.44e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  379 EALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 458
Cdd:COG4235      1 EAIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALAL 80

                           90
                   ....*....|..
gi 2024496797  459 KPDFPDAYCNLA 470
Cdd:COG4235     81 DPDNPEALYLLG 92
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 70-222 8.89e-16

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 75.77  E-value: 8.89e-16
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   70 RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 149
Cdd:COG5010      1 ARALEGFDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQA 80

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024496797  150 LQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 222
Cdd:COG5010     81 LQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
gliding_GltE NF033758
adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a ...
 214-512 1.01e-15

adventurous gliding motility TPR repeat lipoprotein GltE; GltE (also called AglT) is a tetratricopeptide repeat protein with a lipoprotein signal peptide and a role in A-motility (adventurous gliding motility) in Myxococcus xanthus and other delta-proteobacteria.


Pssm-ID: 468174 [Multi-domain]  Cd Length: 411  Bit Score: 80.64  E-value: 1.01e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  214 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPnhavvhgnlacvyyeqglidlaidTYRRAIElqphfp 293
Cdd:NF033758    75 FKAALEADPNLAEAEYNLGVLAERQGKTDEAVARYKAALKKKP------------------------TLRQASE------ 124

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  294 daycNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA---------- 363
Cdd:NF033758   125 ----NLAVMAQNAGDVAGAVALYQDVLKRYPDDASSRARLAEIYRQTGDHDKAMELSRAALMRDPQSTTAlkvmmrsyld 200

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  364 ------------------------HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYT 419
Cdd:NF033758   201 rkqlamaklvalravkidqndpelHHTVGLILLQEGDKDGARLQFKRALEVRADYVPSHVELAQLALDAEDYPGAEEHLR 280

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  420 RAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD-ERMKKLVSIVADQLE 498
Cdd:NF033758   281 RILQADGKNAAAHLNLGVAYKGQGQYDKAMQEYDEAEKLDPELAAIYLNRAIILHRVKDAPERAvELYKKYIAMAGGEVA 360

                          330
                   ....*....|....
gi 2024496797  499 knrLPSVHPHHSML 512
Cdd:NF033758   361 ---LNAEAPVFGLL 371
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 294-465 2.26e-15

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 76.61  E-value: 2.26e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  294 DAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 373
Cdd:TIGR02521   32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ 111

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  374 QGKLQEALMHYKEAIRiSPTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA 450
Cdd:TIGR02521  112 QGKYEQAMQQFEQAIE-DPLYpqpARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190

                          170
                   ....*....|....*
gi 2024496797  451 SYRTALKLKPDFPDA 465
Cdd:TIGR02521  191 YLERYQQTYNQTAES 205
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 339-471 4.63e-15

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 75.84  E-value: 4.63e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  339 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCY 418
Cdd:TIGR02521   43 EQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQF 122

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2024496797  419 TRAIQIN--PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 471
Cdd:TIGR02521  123 EQAIEDPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE 177
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 126-290 4.77e-15

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 75.84  E-value: 4.77e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  126 YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 205
Cdd:TIGR02521   34 RVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG 113

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  206 EIWLAIHHFEKAVtLDPNF---LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI---DLAI 279
Cdd:TIGR02521  114 KYEQAMQQFEQAI-EDPLYpqpARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYkdaRAYL 192

                          170
                   ....*....|.
gi 2024496797  280 DTYRRAIELQP 290
Cdd:TIGR02521  193 ERYQQTYNQTA 203
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 49-155 5.97e-15

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 72.35  E-value: 5.97e-15
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   49 RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYIN 128
Cdd:COG4235     11 AANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYL 90

                           90       100
                   ....*....|....*....|....*..
gi 2024496797  129 LAAALVAAGDMEGAVQAYVSALQYNPD 155
Cdd:COG4235     91 LGLAAFQQGDYAEAIAAWQKLLALLPA 117
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 83-393 1.68e-14

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 77.72  E-value: 1.68e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   83 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN---PDLYCV 159
Cdd:TIGR00990  325 KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNsedPDIYYH 404

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  160 RSDLgNLLKAlgrleeakacylkaietqpNFAVAWSNlgcvfnaqgeiwlaihhFEKAVTLDPNFLDAYINLGnvlkear 239
Cdd:TIGR00990  405 RAQL-HFIKG-------------------EFAQAGKD-----------------YQKSIDLDPDFIFSHIQLG------- 440

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  240 ifdravaaylralslspnhavvhgnlaCVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTA 319
Cdd:TIGR00990  441 ---------------------------VTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTA 493

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  320 LRL-------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 392
Cdd:TIGR00990  494 IELeketkpmYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573


                   .
gi 2024496797  393 T 393
Cdd:TIGR00990  574 T 574
type_IV_pilW TIGR02521
type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF ...
 89-260 2.20e-14

type IV pilus biogenesis/stability protein PilW; Members of this family are designated PilF and PilW. This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.


Pssm-ID: 131573 [Multi-domain]  Cd Length: 234  Bit Score: 73.91  E-value: 2.20e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   89 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 168
Cdd:TIGR02521   31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  169 ALGRLEEAKACYLKAIETQ--PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 246
Cdd:TIGR02521  111 QQGKYEQAMQQFEQAIEDPlyPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARA 190

                          170
                   ....*....|....
gi 2024496797  247 AYLRALSLSPNHAV 260
Cdd:TIGR02521  191 YLERYQQTYNQTAE 204
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 24-154 2.38e-14

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 71.53  E-value: 2.38e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   24 LAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 103
Cdd:COG5010     23 LVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSG 102

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|.
gi 2024496797  104 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 154
Cdd:COG5010    103 DKDEAKEYYEKALALSPDNPNAYSNLAALLLSLGQDDEAKAALQRALGTSP 153
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
64-157 8.21e-14

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 67.89  E-value: 8.21e-14
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   64 IHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEhYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 143
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|....
gi 2024496797  144 QAYVSALQYNPDLY 157
Cdd:COG3063     80 AYLERALELDPSAL 93
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
132-226 1.49e-13

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 67.12  E-value: 1.49e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  132 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAcYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 211
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEAL 79

                           90
                   ....*....|....*
gi 2024496797  212 HHFEKAVTLDPNFLD 226
Cdd:COG3063     80 AYLERALELDPSALR 94
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 348-473 4.01e-13

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 68.06  E-value: 4.01e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  348 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 427
Cdd:COG5010      7 FDRLPLYLLLLTKLRTLVEKYEAALAGANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPN 86

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*.
gi 2024496797  428 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 473
Cdd:COG5010     87 NPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSNLAALL 132
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 293-392 5.43e-13

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 70.27  E-value: 5.43e-13
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  293 PDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ 372
Cdd:NF033920   156 PLAYLRAAQDLEQTGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALA 235

                           90       100
                   ....*....|....*....|
gi 2024496797  373 QQGKLQEALMHYKEAIRISP 392
Cdd:NF033920   236 AQGCTAQARAAAECALALAP 255
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
32-121 1.14e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 64.81  E-value: 1.14e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   32 YQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTlAIKQNPLLAEAYSNLGNVYKERGQLQEAIEH 111
Cdd:COG3063      3 LKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIALEK-ALKLDPNNAEALLNLAELLLELGDYDEALAY 81

                           90
                   ....*....|
gi 2024496797  112 YRHALRLKPD 121
Cdd:COG3063     82 LERALELDPS 91
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 167-357 1.41e-12

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 69.58  E-value: 1.41e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  167 LKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVL--KEA-RIFD 242
Cdd:cd24142     10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLGQLSggEEAlQYYE 89

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  243 RAVAAYLRALslspnhavvhgnlacvyyeQGLIDLAIDTYRRAIELQPHFPDAYCNLA-----NALKEKGSVAEAEECYN 317
Cdd:cd24142     90 KGIEILEEEL-------------------QALQAASAEAEEEAEELKRKLSSALCALAeiymtDLCDEPDAEQRCEELIT 150

                          170       180       190       200
                   ....*....|....*....|....*....|....*....|
gi 2024496797  318 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 357
Cdd:cd24142    151 KALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELW 190
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 269-485 3.48e-12

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 68.42  E-value: 3.48e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  269 YYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTH-ADSLNNLANIkrEQGniEEAV 347
Cdd:cd24142     10 LLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYLGQL--SGG--EEAL 85

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  348 RLYRKALEVfpefaaahsnLASVLQQQGKLQEALMHYKEAIRisPTFADAYSNMGntlkE--MQDV-------QGALQCY 418
Cdd:cd24142     86 QYYEKGIEI----------LEEELQALQAASAEAEEEAEELK--RKLSSALCALA----EiyMTDLcdepdaeQRCEELI 149

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2024496797  419 TRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-KPDFPDAYCNLAHCLQIVCDWTDYDER 485
Cdd:cd24142    150 TKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLELwKDLKEEDEEEAEEDEAEEEDVPSYEFR 217
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 22-136 3.67e-12

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 64.64  E-value: 3.67e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   22 QGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE 101
Cdd:COG4235     18 EGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQ 97

                           90       100       110
                   ....*....|....*....|....*....|....*
gi 2024496797  102 RGQLQEAIEHYRHALRLKPDFIDGYInLAAALVAA 136
Cdd:COG4235     98 QGDYAEAIAAWQKLLALLPADAPARL-LEASIAEA 131
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
407-498 4.20e-12

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 63.27  E-value: 4.20e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  407 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAsYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 486
Cdd:COG3063      4 KLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIA-LEKALKLDPNNAEALLNLAELLLELGDYDEALAYL 82

                           90
                   ....*....|..
gi 2024496797  487 KKLVSIVADQLE 498
Cdd:COG3063     83 ERALELDPSALR 94
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 174-464 6.48e-12

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 69.63  E-value: 6.48e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  174 EEAKACYLKAI---ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 250
Cdd:TIGR00990  311 EEAARAFEKALdlgKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDK 390

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  251 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSL 330
Cdd:TIGR00990  391 ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVY 470

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  331 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE-------AIRISPTFADAYSNMGN 403
Cdd:TIGR00990  471 NYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEaenlcekALIIDPECDIAVATMAQ 550

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024496797  404 TLKEMQDVQGALQCYTRAiqinpafadahsnlASIHKDSGNIPEAIA---SYRTALKLKPDFPD 464
Cdd:TIGR00990  551 LLLQQGDVDEALKLFERA--------------AELARTEGELVQAISyaeATRTQIQVQEDYPV 600
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 24-122 9.22e-12

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 63.67  E-value: 9.22e-12
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   24 LAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 103
Cdd:COG4783     41 FALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALG 120

                           90
                   ....*....|....*....
gi 2024496797  104 QLQEAIEHYRHALRLKPDF 122
Cdd:COG4783    121 RPDEAIAALEKALELDPDD 139
TPR_12 pfam13424
Tetratricopeptide repeat;
327-390 1.26e-11

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 61.25  E-value: 1.26e-11
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024496797  327 ADSLNNLANIKREQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 390
Cdd:pfam13424    3 ATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 101-462 2.74e-11

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 68.19  E-value: 2.74e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  101 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCvRSDLGNLLKAlGRleeakacY 180
Cdd:PRK11447   281 DSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN-RDKWESLLKV-NR-------Y 351

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  181 LKAIEtQPNFAVAWSNLGcvfnaqgeiwLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHA 259
Cdd:PRK11447   352 WLLIQ-QGDAALKANNLA----------QAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPgNTN 420

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  260 VVHGnLACVYYEQG-------LIDL------AIDTYRRAIELqphfpDAYCNLANALKEKGSVAEAEECYNTALRLCPTH 326
Cdd:PRK11447   421 AVRG-LANLYRQQSpekalafIASLsasqrrSIDDIERSLQN-----DRLAQQAEALENQGKWAQAAELQRQRLALDPGS 494

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFP-------------------EFAAAHSN--------------------- 366
Cdd:PRK11447   495 VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPndpeqvyayglylsgsdrdRAALAHLNtlpraqwnsniqelaqrlqsd 574

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  367 ----LASVLQQQGKLQEA--LMHYKEA-IRISPTFADAYSNMGntlkemqDVQGALQCYTRAIQINPAFADAHSNLASIH 439
Cdd:PRK11447   575 qvleTANRLRDSGKEAEAeaLLRQQPPsTRIDLTLADWAQQRG-------DYAAARAAYQRVLTREPGNADARLGLIEVD 647

                          410       420
                   ....*....|....*....|...
gi 2024496797  440 KDSGNIPEAiasyRTALKLKPDF 462
Cdd:PRK11447   648 IAQGDLAAA----RAQLAKLPAT 666
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 23-393 3.76e-11

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 67.42  E-value: 3.76e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   23 GLAELAHREyqaGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--------NPLLAEAYSN 94
Cdd:PRK11447   390 GLGDVAMAR---KDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQrrsiddieRSLQNDRLAQ 466

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   95 LGNVYKERGQLQEAIEHYRHALRLKPDfiDGYIN--LAAALVAAGDMEGAVQAYVSALQYNPdlycvrsdlgnllkalGR 172
Cdd:PRK11447   467 QAEALENQGKWAQAAELQRQRLALDPG--SVWLTyrLAQDLRQAGQRSQADALMRRLAQQKP----------------ND 528

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  173 LEE--AKACYLKAIEtQPNFAVAwsNLGCVFNAQgeiWLA-IHHFEKAVTLDpNFLDAYINLGNVLKEArifdrAVAAYL 249
Cdd:PRK11447   529 PEQvyAYGLYLSGSD-RDRAALA--HLNTLPRAQ---WNSnIQELAQRLQSD-QVLETANRLRDSGKEA-----EAEALL 596

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  250 RALSLSPNHAVVhgnLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEEcyntALRLCPTHA-D 328
Cdd:PRK11447   597 RQQPPSTRIDLT---LADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARA----QLAKLPATAnD 669

                          330       340       350       360       370       380       390
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024496797  329 SLN---NLANIKREQGNIEEAVRLYR------KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI---RISPT 393
Cdd:PRK11447   670 SLNtqrRVALAWAALGDTAAAQRTFNrlipqaKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMvasGITPT 746
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 328-520 4.65e-11

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 64.96  E-value: 4.65e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  328 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGntlk 406
Cdd:cd24142      1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDgGYEKYLYLG---- 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  407 emQDVQG--ALQCYTRAIQI--------NPAFADAHSNLASIHKDsgnIPEAIAS----YRT------------------ 454
Cdd:cd24142     77 --QLSGGeeALQYYEKGIEIleeelqalQAASAEAEEEAEELKRK---LSSALCAlaeiYMTdlcdepdaeqrceelitk 151

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024496797  455 ALKLKPDFPDAYCNLAHcLQIV-CDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHSFR 520
Cdd:cd24142    152 ALELDPTNPEALQTLAS-LRISqQRPDEAKEALRRSLELWKDLKEEDEEEAEEDEAEEEDVPSYEFR 217
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 226-391 7.74e-11

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 64.57  E-value: 7.74e-11
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  226 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALK 304
Cdd:cd24142      1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPdGGYEKYLYLGQLSG 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  305 EKgsvaEAEECYNTALRLCPTHADSLNNLAniKREQGNIEEAVR-----------LY------------------RKALE 355
Cdd:cd24142     81 GE----EALQYYEKGIEILEEELQALQAAS--AEAEEEAEELKRklssalcalaeIYmtdlcdepdaeqrceeliTKALE 154

                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 2024496797  356 VFPEFAAAHSNLASVLQQQGKLQEAlmhyKEAIRIS 391
Cdd:cd24142    155 LDPTNPEALQTLASLRISQQRPDEA----KEALRRS 186
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 8-381 5.94e-10

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 63.40  E-value: 5.94e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797    8 VADSTEPTKRMLsfqgLAELAHREYQAGDFEAAERHC---MQLWRQ--EPDNTGVLLL---LSSIHFQ------CRRLDR 73
Cdd:NF040586   383 ALESDDPEVRRL----LLDQVRYLYLRGDYESARDLAeraLERWRErlGPDDRQTLRLrfhLANALRSlgryeeARELDE 458

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   74 SA-------------HFSTLAikqnpllaeAYSNLGNVYKERGQLQEAIEHYRHALR-----LKPDfiDGYI-----NLA 130
Cdd:NF040586   459 DTlerqrrvlglgedHPHTLM---------TAGGLGADLRALGRFREALELDEETLErhrrvFGED--HPRTlraanNLA 527

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  131 AALVAAGDmegavqaYVSALQYNPDLYCVRSDLGNllkalgrleeakacylkaiETQPNFAVAWSNLGCVFNAQGEiwla 210
Cdd:NF040586   528 VSLRLLGD-------YREALELDREVLRRRRRVLG-------------------PDHPRTLLSANNLARDLRELGR---- 577

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  211 ihhFEKAVTLdpnfldayinlgnvLKEARifdravaAYLRALSLSPNHAVVHG---NLACVYYEQGLID----LAIDTYR 283
Cdd:NF040586   578 ---YAEALDL--------------LEEAL-------ERYREVLGGPDHPDTLRaakSLAVALRRAGRLEealeLAEDTYE 633

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  284 RAIELQ-PHFPD---AYCNLANALKEKG----SVAEAEECYNT-ALRLCPTHADSL---NNLANIKREQGNIEEAVRLYR 351
Cdd:NF040586   634 RYRRRFgPDHPDtlaAALSLANDLRALGdadeARELAREVLDRyRRVLGEDHPFTLacrNNLAVLLRALGDPEEARELAE 713

                          410       420       430       440
                   ....*....|....*....|....*....|....*....|
gi 2024496797  352 KALEVFPE----------FAAAhsNLASVLQQQGKLQEAL 381
Cdd:NF040586   714 AALEGLRErlgpdhpytlAAAV--NLANDLAALGDLDAAL 751
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 269-363 8.64e-10

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 57.31  E-value: 8.64e-10
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  269 YYEQGLIDLAIDTYRRAIELQP---HFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTH---ADSLNNLANIKREQGN 342
Cdd:COG1729      3 LLKAGDYDEAIAAFKAFLKRYPnspLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSpkaPDALLKLGLSYLELGD 82

                           90       100
                   ....*....|....*....|.
gi 2024496797  343 IEEAVRLYRKALEVFPEFAAA 363
Cdd:COG1729     83 YDKARATLEELIKKYPDSEAA 103
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 81-154 1.12e-09

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 60.26  E-value: 1.12e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024496797   81 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 154
Cdd:NF033920   182 ATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALAP 255
TPR_12 pfam13424
Tetratricopeptide repeat;
295-359 1.22e-09

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 55.47  E-value: 1.22e-09
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024496797  295 AYCNLANALKEKGSVAEAEECYNTALRLC-----PTH---ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 359
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIArrllgPDHpltATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
24-178 2.34e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 59.25  E-value: 2.34e-09
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   24 LAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 103
Cdd:COG0457     79 LNNLGLALQALGRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGIALEKLG 158

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024496797  104 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA 178
Cdd:COG0457    159 RYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQALRKKLAILTLAALAELLLLALALLLAL 233
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 414-473 2.01e-08

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 53.86  E-value: 2.01e-08
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  414 ALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 473
Cdd:COG4235      2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEAL 61
TPR_1 pfam00515
Tetratricopeptide repeat;
89-122 2.11e-08

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 50.88  E-value: 2.11e-08
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2024496797   89 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 122
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 24-223 3.02e-08

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 56.84  E-value: 3.02e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   24 LAELAhreYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQC----------RRLDRSAHFSTLAIKQnpLLAEAYS 93
Cdd:COG3071     91 RAELL---LDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLgdweellellPALRKHKALSAEEAQA--LERRAYL 165

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   94 NLgnvYKERGQLQEAIEHYRHAL----RLKPDFIDGYinlAAALVAAGDMEGAVQAYVSALQYNPD-----LY--CVRSD 162
Cdd:COG3071    166 GL---LRQAARDAEALKALWKALpraeRRDPELAAAY---ARALIALGDHDEAERLLREALKRQWDprlvrLYgrLQGGD 239

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  163 LGNLLK-----------------ALGRL-------EEAKACYLKAIETQPNfAVAWSNLGCVFNAQGEIWLAIHHFEKAV 218
Cdd:COG3071    240 PAKQLKraekwlkkhpndpdlllALGRLclrnqlwGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKAL 318


                   ....*
gi 2024496797  219 TLDPN 223
Cdd:COG3071    319 ALALG 323
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 203-381 3.06e-08

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 56.94  E-value: 3.06e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  203 AQGEIWLAIHHFEKAVTLDP--NFLD---AYINLG--NVLKEARifDRAVAAYLRALSLSPNHAVVHGN------LACVY 269
Cdd:pfam17874   13 SKGDAERALELAEQALALLPedDLLArglATFVLGeaYLCLGDL--DAALQAMREAEALARRADSPHVTlwallqQGEIL 90

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  270 YEQGLIDLAIDTYRRAIELQP-----HFP---DAYCNLANALKEKGSVAEAEECYNTALRLC---PTHA--DSLNNLANI 336
Cdd:pfam17874   91 RAQGRLHQALETYQQALQLARdhglqHLPlhgFLLVGLADLLYEWNDLEEAEQHAQQGIQLGrqwEPDAavDAYVLLARI 170

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2024496797  337 KREQGNIEEAVRLYRKALEV---FPEFAAAHSNLASV----LQQQGKLQEAL 381
Cdd:pfam17874  171 ALAQGELEEALTLLRRAELLarqSFFHVDWLANAERVrvrlWLARGDLRAAV 222
TPR_11 pfam13414
TPR repeat;
96-137 3.12e-08

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 50.55  E-value: 3.12e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 2024496797   96 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 137
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 339-423 3.17e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 52.69  E-value: 3.17e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  339 EQGNIEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNMGNTLKEMQDVQ 412
Cdd:COG1729      5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRypdSPKAPDALLKLGLSYLELGDYD 84

                           90
                   ....*....|.
gi 2024496797  413 GALQCYTRAIQ 423
Cdd:COG1729     85 KARATLEELIK 95
TPR_12 pfam13424
Tetratricopeptide repeat;
359-427 3.26e-08

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 51.62  E-value: 3.26e-08
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024496797  359 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 427
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR_11 pfam13414
TPR repeat;
268-307 3.41e-08

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 50.16  E-value: 3.41e-08
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 2024496797  268 VYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 307
Cdd:pfam13414    3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 302-392 4.41e-08

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 52.30  E-value: 4.41e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  302 ALKEKGSVAEAEECYNTALRLCPTH---ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQG 375
Cdd:COG1729      2 ALLKAGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELG 81

                           90
                   ....*....|....*..
gi 2024496797  376 KLQEALMHYKEAIRISP 392
Cdd:COG1729     82 DYDKARATLEELIKKYP 98
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 17-324 4.81e-08

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 56.07  E-value: 4.81e-08
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   17 RMLSFQGLAELAHreyQAGDFEAAERHCMQLWRQEPDN-TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 95
Cdd:COG3071     49 PLLAYLLAARAAQ---ALGDYERRDEYLAQALELAPEAeLAVLLTRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLL 125

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   96 GNVYKERGQLQEAIEHYRHALR---LKPDFIDGYINLAAA---LVAAGDMEGAVQAYVS---ALQYNPDLycvRSDLGNL 166
Cdd:COG3071    126 LQAYRQLGDWEELLELLPALRKhkaLSAEEAQALERRAYLgllRQAARDAEALKALWKAlprAERRDPEL---AAAYARA 202

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  167 LKALGRLEEAKACYLKAIETQPnfavawsnlgcvfnaqgeiwlaihhfekavtlDPNFLDAYINLGNVLKEARIfdrava 246
Cdd:COG3071    203 LIALGDHDEAERLLREALKRQW--------------------------------DPRLVRLYGRLQGGDPAKQL------ 244

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2024496797  247 AYL-RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHfPDAYCNLANALKEKGSVAEAEECYNTALRLCP 324
Cdd:COG3071    245 KRAeKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALALAL 322
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 89-122 8.06e-08

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 48.98  E-value: 8.06e-08
                            10        20        30
                    ....*....|....*....|....*....|....
gi 2024496797    89 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 122
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 266-358 2.17e-07

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 53.32  E-value: 2.17e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  266 ACVYYEQ-GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIE 344
Cdd:NF033920   162 AAQDLEQtGQPEAALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTA 241

                           90
                   ....*....|....
gi 2024496797  345 EAVRLYRKALEVFP 358
Cdd:NF033920   242 QARAAAECALALAP 255
TPR_11 pfam13414
TPR repeat;
334-375 3.65e-07

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 47.47  E-value: 3.65e-07
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 2024496797  334 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG 375
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 332-392 4.54e-07

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 48.10  E-value: 4.54e-07
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024496797  332 NLANIKREQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 392
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
TPR_11 pfam13414
TPR repeat;
373-409 6.27e-07

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 46.70  E-value: 6.27e-07
                           10        20        30
                   ....*....|....*....|....*....|....*..
gi 2024496797  373 QQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 409
Cdd:pfam13414    6 EQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
TPR_11 pfam13414
TPR repeat;
438-471 6.65e-07

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 46.70  E-value: 6.65e-07
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2024496797  438 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH 471
Cdd:pfam13414    3 AYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGL 36
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 89-121 9.97e-07

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 45.98  E-value: 9.97e-07
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2024496797   89 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 121
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 373-465 1.20e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 48.06  E-value: 1.20e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  373 QQGKLQEALMHYKEAIRI---SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA---FADAHSNLASIHKDSGNIP 446
Cdd:COG1729      5 KAGDYDEAIAAFKAFLKRypnSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSYLELGDYD 84

                           90
                   ....*....|....*....
gi 2024496797  447 EAIASYRTALKLKPDFPDA 465
Cdd:COG1729     85 KARATLEELIKKYPDSEAA 103
TPR_12 pfam13424
Tetratricopeptide repeat;
87-151 1.31e-06

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 47.00  E-value: 1.31e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024496797   87 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 151
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALA 73
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 101-193 1.95e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 47.68  E-value: 1.95e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  101 ERGQLQEAIEHYRHALRLKPD---FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-------LYcvrsDLGNLLKAL 170
Cdd:COG1729      5 KAGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDspkapdaLL----KLGLSYLEL 80

                           90       100
                   ....*....|....*....|...
gi 2024496797  171 GRLEEAKACYLKAIETQPNFAVA 193
Cdd:COG1729     81 GDYDKARATLEELIKKYPDSEAA 103
PRK11447 PRK11447
cellulose synthase subunit BcsC; Provisional
 210-464 3.58e-06

cellulose synthase subunit BcsC; Provisional


Pssm-ID: 183140 [Multi-domain]  Cd Length: 1157  Bit Score: 51.24  E-value: 3.58e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  210 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-----------------AVVHGNLAcvyYEQ 272
Cdd:PRK11447   288 AIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSsnrdkwesllkvnrywlLIQQGDAA---LKA 364

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  273 GLIDLAIDTYRRAIELQPHfpDAYC--NLANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQGnieeavrly 350
Cdd:PRK11447   365 NNLAQAERLYQQARQVDNT--DSYAvlGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQS--------- 433

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  351 rkalevfPEFAAAHSNLASVLQQQ--GKLQEALMHykeairisptfaDAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 428
Cdd:PRK11447   434 -------PEKALAFIASLSASQRRsiDDIERSLQN------------DRLAQQAEALENQGKWAQAAELQRQRLALDPGS 494

                          250       260       270
                   ....*....|....*....|....*....|....*.
gi 2024496797  429 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD 464
Cdd:PRK11447   495 VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 28-288 3.75e-06

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 50.39  E-value: 3.75e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   28 AHREYQAGDFEAAERHCMQ-LWRQEPDNTGVLLLLSSIH---FQCR-RLDRS-AHFS---TLAIKQNPLLAEAYS--NLG 96
Cdd:pfam17874    8 AQLAISKGDAERALELAEQaLALLPEDDLLARGLATFVLgeaYLCLgDLDAAlQAMReaeALARRADSPHVTLWAllQQG 87

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   97 NVYKERGQLQEAIEHYRHALRLKPD------FIDG--YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 168
Cdd:pfam17874   88 EILRAQGRLHQALETYQQALQLARDhglqhlPLHGflLVGLADLLYEWNDLEEAEQHAQQGIQLGRQWEPDAAVDAYVLL 167

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  169 -----ALGRLEEAKAcYLKAIE---TQPNFAVAWsnLGCVFNAQGEIWLA----------IHHFEKAVTLDPNFLDA-YI 229
Cdd:pfam17874  168 arialAQGELEEALT-LLRRAEllaRQSFFHVDW--LANAERVRVRLWLArgdlraavrwLRAAEPPSDADNHFLEReLR 244

                          250       260       270       280       290       300
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024496797  230 NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGN-----LACVYYEQGLIDLAIDTYRRAIEL 288
Cdd:pfam17874  245 NLARVLLALGRFDDALSLLERLQNLAeQLGRVRSLIenlilQALALLALGRPDEALQALLDALSL 309
TPR_11 pfam13414
TPR repeat;
164-205 4.87e-06

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 44.38  E-value: 4.87e-06
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 2024496797  164 GNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 205
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 34-328 4.89e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 50.69  E-value: 4.89e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   34 AGDFEAAERHCMQLWRQEpdntgvllllssihfqcRRLDRSAHFSTLAikqnpllaeAYSNLGNVYKERGQLQEAIEHYR 113
Cdd:NF040586   533 LGDYREALELDREVLRRR-----------------RRVLGPDHPRTLL---------SANNLARDLRELGRYAEALDLLE 586

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  114 HALR------LKPDFIDGYI---NLAAALVAAGDMEGA-------VQAYVSALQ-YNPDLYCVRSDLGNLLKALGRLEEA 176
Cdd:NF040586   587 EALEryrevlGGPDHPDTLRaakSLAVALRRAGRLEEAlelaedtYERYRRRFGpDHPDTLAAALSLANDLRALGDADEA 666

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  177 kacyLKAIETqpnfavawsnlgcvfnaqgeiwlAIHHFEKAVTLD-PNFLDAYINLGNVLK------EARIFDRAVAAYL 249
Cdd:NF040586   667 ----RELARE-----------------------VLDRYRRVLGEDhPFTLACRNNLAVLLRalgdpeEARELAEAALEGL 719

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  250 RAlSLSPNH------AVvhgNLACVYYEQGLIDLAID--TYRRAIELQ-------PHFPD---AYCNLANALKEKGSVAE 311
Cdd:NF040586   720 RE-RLGPDHpytlaaAV---NLANDLAALGDLDAALGeeALERLRRLLgedlragPDHPDtlaCAANLALDLRATGRTEE 795

                          330       340
                   ....*....|....*....|..
gi 2024496797  312 AEECYNTAL-----RLCPTHAD 328
Cdd:NF040586   796 AEELRADTLarlrrVLGPDHPD 817
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
92-190 5.61e-06

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 49.11  E-value: 5.61e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   92 YSNLGNVYKERGQLQEAIEHYRHAL-RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLycvRSDLGNLLKA- 169
Cdd:COG4700     92 RVRLADALLELGRYDEAIELYEEALtGIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDF---KSSDAHLLYAr 168

                           90       100
                   ....*....|....*....|....*
gi 2024496797  170 ----LGRLEEAKACYLKAIETQPNF 190
Cdd:COG4700    169 aleaLGDLEAAEAELEALARRYSGP 193
FxSxx_TPR NF040586
FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about ...
 237-508 6.09e-06

FxSxx-COOH system tetratricopeptide repeat protein; Members of this family are typically about 850 amino acids long, or 1300 long because of an additional N-terminal domain. Proteins have a P-loop motif, GxGGxGKT, near the N-terminus of the region covered by this HMM, and a region over 400 residues long of tetratricopeptide repeat sequence. The family is found regularly next to other components of FxSxx-COOH systems, which feature an FxsB family radical SAM protein and a protein modified by it, FxsA. Members of this FxsA family typically have an FxSxx motif as the final five amino acids.


Pssm-ID: 468560 [Multi-domain]  Cd Length: 836  Bit Score: 50.30  E-value: 6.09e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  237 EARIFDRAVAAYLRALsLSPNHA---VVHGNLACVY-----YEQGLiDLAIDTYRRAIELQPhfPD------AYCNLANA 302
Cdd:NF040586   496 EALELDEETLERHRRV-FGEDHPrtlRAANNLAVSLrllgdYREAL-ELDREVLRRRRRVLG--PDhprtllSANNLARD 571

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  303 LKEKGSVAEA----EECYNTALRLC--PTHADSLN---NLANIKREQGNIEEAVRL----YRKALEVF----PEFAAAHS 365
Cdd:NF040586   572 LRELGRYAEAldllEEALERYREVLggPDHPDTLRaakSLAVALRRAGRLEEALELaedtYERYRRRFgpdhPDTLAAAL 651

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  366 NLASVLQQQGKLQEALMHYKEAIRISP---------TFAdAYSNMGNTLKEMQDVQGALQCYTRAI-QINPAFADAH--- 432
Cdd:NF040586   652 SLANDLRALGDADEARELAREVLDRYRrvlgedhpfTLA-CRNNLAVLLRALGDPEEARELAEAALeGLRERLGPDHpyt 730

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  433 ----SNLASIHKDSGNIPEAIAS---------YRTALKLKPDFPD---AYCNLAHCLQIvcdwTDYDERMKKLVSIVADQ 496
Cdd:NF040586   731 laaaVNLANDLAALGDLDAALGEealerlrrlLGEDLRAGPDHPDtlaCAANLALDLRA----TGRTEEAEELRADTLAR 806

                          330
                   ....*....|..
gi 2024496797  497 LEKnRLPSVHPH 508
Cdd:NF040586   807 LRR-VLGPDHPD 817
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 307-406 6.19e-06

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 47.74  E-value: 6.19e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  307 GSVAEAEECYNTALRLCPTHAD---SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL-------QQQGK 376
Cdd:PRK02603    49 GEYAEALENYEEALKLEEDPNDrsyILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYhkrgekaEEAGD 128

                           90       100       110
                   ....*....|....*....|....*....|....*..
gi 2024496797  377 LQEALMHY-------KEAIRISPtfaDAYSNMGNTLK 406
Cdd:PRK02603   129 QDEAEALFdkaaeywKQAIRLAP---NNYIEAQNWLK 162
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 210-426 6.41e-06

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 49.81  E-value: 6.41e-06
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  210 AIHHFEKAVTLDPNFLDAYINLGN-------------------------------VLKE-------ARIFDRAVAAYLRa 251
Cdd:PRK11788    54 AIDLFIEMLKVDPETVELHLALGNlfrrrgevdrairihqnllsrpdltreqrllALQElgqdylkAGLLDRAEELFLQ- 132

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  252 LSLSPNHAVVhgnlAcvyyEQGLIDL---------AIDTYRRAIELQP--------HFpdaYCNLANALKEKGSVAEAEE 314
Cdd:PRK11788   133 LVDEGDFAEG----A----LQQLLEIyqqekdwqkAIDVAERLEKLGGdslrveiaHF---YCELAQQALARGDLDAARA 201

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  315 CYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA-AHSNLASVLQQQGKLQEALMHYKEAIRISPt 393
Cdd:PRK11788   202 LLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSeVLPKLMECYQALGDEAEGLEFLRRALEEYP- 280

                          250       260       270
                   ....*....|....*....|....*....|...
gi 2024496797  394 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 426
Cdd:PRK11788   281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHP 313
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 84-155 7.07e-06

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 46.14  E-value: 7.07e-06
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024496797   84 QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI---DGYINLAAALVAAGDMEGAVQAYVSALQYNPD 155
Cdd:COG1729     25 NSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPkapDALLKLGLSYLELGDYDKARATLEELIKKYPD 99
TPR_1 pfam00515
Tetratricopeptide repeat;
395-426 9.90e-06

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 43.18  E-value: 9.90e-06
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2024496797  395 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 426
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
TPR_11 pfam13414
TPR repeat;
402-443 1.13e-05

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 43.23  E-value: 1.13e-05
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 2024496797  402 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 443
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
COG3899 COG3899
Predicted ATPase [General function prediction only];
88-323 1.66e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 49.09  E-value: 1.66e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   88 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDG------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRS 161
Cdd:COG3899    704 AARLLLRAARRALARGAYAEALRYLERALELLPPDPEEeyrlalLLELAEALYLAGRFEEAEALLERALAARALAALAAL 783

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  162 DLGNLLKA-----------LGRLEEAKACYLKAIE------TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 224
Cdd:COG3899    784 RHGNPPASarayanlglllLGDYEEAYEFGELALAlaerlgDRRLEARALFNLGFILHWLGPLREALELLREALEAGLET 863

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  225 LDAyinLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK 304
Cdd:COG3899    864 GDA---ALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAAAAAAALAAAELARLAAAAAAAAALALAAAAAAA 940

                          250
                   ....*....|....*....
gi 2024496797  305 EKGSVAEAEECYNTALRLC 323
Cdd:COG3899    941 AAAALAAAAAAAALAAALA 959
TPR_1 pfam00515
Tetratricopeptide repeat;
327-360 1.77e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.41  E-value: 1.77e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2024496797  327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 360
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_1 pfam00515
Tetratricopeptide repeat;
191-224 1.77e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.41  E-value: 1.77e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2024496797  191 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 224
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
298-410 1.80e-05

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 47.57  E-value: 1.80e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  298 NLANALKEKGSVAEAEECYNTAL-RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF--AAAHSNLASVLQQQ 374
Cdd:COG4700     94 RLADALLELGRYDEAIELYEEALtGIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFksSDAHLLYARALEAL 173

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*...
gi 2024496797  375 GKLQEALMHYKEAIRISPTF------ADAYSNMGNT------LKEMQD 410
Cdd:COG4700    174 GDLEAAEAELEALARRYSGPearyryAKFLARQGRTaeakelLEEILD 221
TPR_19 pfam14559
Tetratricopeptide repeat;
136-195 1.84e-05

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 43.34  E-value: 1.84e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  136 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWS 195
Cdd:pfam14559    1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAA 60
TPR_10 pfam13374
Tetratricopeptide repeat;
327-356 2.02e-05

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 42.49  E-value: 2.02e-05
                           10        20        30
                   ....*....|....*....|....*....|
gi 2024496797  327 ADSLNNLANIKREQGNIEEAVRLYRKALEV 356
Cdd:pfam13374    2 ASSLNNLANALRAQGRYDEAEELLEEALAI 31
TPR_1 pfam00515
Tetratricopeptide repeat;
293-326 2.15e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 42.41  E-value: 2.15e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2024496797  293 PDAYCNLANALKEKGSVAEAEECYNTALRLCPTH 326
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 327-360 2.26e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 42.05  E-value: 2.26e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 2024496797   327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 360
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 204-295 2.38e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 44.60  E-value: 2.38e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  204 QGEIWLAIHHFEKAVTLDPN---FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG---NLACVYYEQGLIDL 277
Cdd:COG1729      6 AGDYDEAIAAFKAFLKRYPNsplAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDallKLGLSYLELGDYDK 85

                           90
                   ....*....|....*...
gi 2024496797  278 AIDTYRRAIELQPHFPDA 295
Cdd:COG1729     86 ARATLEELIKKYPDSEAA 103
COG3899 COG3899
Predicted ATPase [General function prediction only];
243-436 2.74e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 48.32  E-value: 2.74e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  243 RAVAAYLRALSLSPNHA-----VVHGNLAcvyyeqGLIDLAIDTYRRAielqphfpdaycnlANALKEKGSVAEAEECYN 317
Cdd:COG3899    670 RRIARALEARGPEPLEErlfelAHHLNRA------GERDRAARLLLRA--------------ARRALARGAYAEALRYLE 729

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  318 TALRLCP------THADSLNNLANIKREQGNIEEAVRLYRKALEV-------------FPEFAAAHSNLASVLqqQGKLQ 378
Cdd:COG3899    730 RALELLPpdpeeeYRLALLLELAEALYLAGRFEEAEALLERALAAralaalaalrhgnPPASARAYANLGLLL--LGDYE 807

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024496797  379 EALMHYKEAIRISPTF------ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 436
Cdd:COG3899    808 EAYEFGELALALAERLgdrrleARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALL 871
COG3899 COG3899
Predicted ATPase [General function prediction only];
338-465 2.74e-05

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 48.32  E-value: 2.74e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  338 REQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMHYKEAIRI-------------SPTFADAY 398
Cdd:COG3899    716 LARGAYAEALRYLERALELLPPDpeeeyrLALLLELAEALYLAGRFEEAEALLERALAAralaalaalrhgnPPASARAY 795

                           90       100       110       120       130       140       150
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2024496797  399 SNMGNTLkeMQDVQGALQCYTRAIQINPAF------ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 465
Cdd:COG3899    796 ANLGLLL--LGDYEEAYEFGELALALAERLgdrrleARALFNLGFILHWLGPLREALELLREALEAGLETGDA 866
TPR_12 pfam13424
Tetratricopeptide repeat;
227-288 2.74e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 43.14  E-value: 2.74e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  227 AYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 288
Cdd:pfam13424    5 ALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYLELGRYEEALELLERALAL 74
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 163-423 2.94e-05

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 47.21  E-value: 2.94e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  163 LGNLLKAL-----GRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYinlgnVLKE 237
Cdd:COG3071     17 LAALLEGLlalaeGRYARAEKLLSKAAEHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEAELAV-----LLTR 91

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  238 ARI------FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR--------AIELQPHFPDAYCNL---- 299
Cdd:COG3071     92 AELlldqgqAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPAlrkhkalsAEEAQALERRAYLGLlrqa 171

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  300 ----------------------------ANALKEKGSVAEAEECYNTALRLCPtHADSLNNLANIkrEQGNIEEAVRLYR 351
Cdd:COG3071    172 ardaealkalwkalpraerrdpelaaayARALIALGDHDEAERLLREALKRQW-DPRLVRLYGRL--QGGDPAKQLKRAE 248

                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024496797  352 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTfADAYSNMGNTLKEMQDVQGALQCYTRAIQ 423
Cdd:COG3071    249 KWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALA 319
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 409-502 2.94e-05

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 48.37  E-value: 2.94e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  409 QDVQGALQCYTRAIQINPAfADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLqivCDWTDYDERMKK 488
Cdd:PRK09782   590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYAL---WDSGDIAQSREM 665

                           90
                   ....*....|....
gi 2024496797  489 LVSIVADQLEKNRL 502
Cdd:PRK09782   666 LERAHKGLPDDPAL 679
TPR_1 pfam00515
Tetratricopeptide repeat;
361-394 2.97e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 41.64  E-value: 2.97e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2024496797  361 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 394
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 103-236 3.17e-05

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 45.43  E-value: 3.17e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  103 GQLQEAIEHYRHALRLKPDFID-GYI--NLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAc 179
Cdd:PRK02603    49 GEYAEALENYEEALKLEEDPNDrSYIlyNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAG- 127

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2024496797  180 ylkaietQPNFAVAWsnlgcvFNAQGEIWlaihhfEKAVTLDPNfldAYINLGNVLK 236
Cdd:PRK02603   128 -------DQDEAEAL------FDKAAEYW------KQAIRLAPN---NYIEAQNWLK 162
TPR_1 pfam00515
Tetratricopeptide repeat;
259-292 3.31e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 41.64  E-value: 3.31e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2024496797  259 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 292
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_12 pfam13424
Tetratricopeptide repeat;
24-121 3.78e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.76  E-value: 3.78e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   24 LAELAHREYQAGDFEAAERH---CMQLWRQEPDntgvllllssihfqcrrldrsahfstlaiKQNPLLAEAYSNLGNVYK 100
Cdd:pfam13424    6 LNNLAAVLRRLGRYDEALELlekALEIARRLLG-----------------------------PDHPLTATTLLNLGRLYL 56

                           90       100
                   ....*....|....*....|.
gi 2024496797  101 ERGQLQEAIEHYRHALRLKPD 121
Cdd:pfam13424   57 ELGRYEEALELLERALALAEK 77
TPR_8 pfam13181
Tetratricopeptide repeat;
89-121 3.94e-05

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 41.61  E-value: 3.94e-05
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2024496797   89 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 121
Cdd:pfam13181    1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 293-326 4.07e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 41.28  E-value: 4.07e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 2024496797   293 PDAYCNLANALKEKGSVAEAEECYNTALRLCPTH 326
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_12 pfam13424
Tetratricopeptide repeat;
155-223 4.79e-05

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 42.76  E-value: 4.79e-05
                           10        20        30        40        50        60        70
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024496797  155 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN 223
Cdd:pfam13424    1 DVATALNNLAAVLRRLGRYDEALELLEKALEIArrllgpdhPLTATTLLNLGRLYLELGRYEEALELLERALALAEK 77
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 259-292 5.42e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 41.28  E-value: 5.42e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 2024496797   259 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 292
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 191-224 5.58e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.89  E-value: 5.58e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 2024496797   191 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 224
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 361-394 6.46e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.89  E-value: 6.46e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 2024496797   361 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 394
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 23-389 6.73e-05

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 46.06  E-value: 6.73e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   23 GLAELAH--REYQAGDFEAAERHCMQLWRQEpDNTGVLLLLSSihfqcrrldRSAHfstlaikqnpllaeaysnlgnvyk 100
Cdd:COG3071     16 LLAALLEglLALAEGRYARAEKLLSKAAEHS-EAPLLAYLLAA---------RAAQ------------------------ 61

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  101 ERGQLQEAIEHYRHALRLKPDFidgyiNLAAALVAA------GDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE 174
Cdd:COG3071     62 ALGDYERRDEYLAQALELAPEA-----ELAVLLTRAellldqGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWE 136

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  175 EAKAcYLKAIETQPNFAVAWSnlgcvfnAQGEIWLAIHHFEKAVTlDPNFLDAYINlgNVLKEARIFDRAVAAYLRALSl 254
Cdd:COG3071    137 ELLE-LLPALRKHKALSAEEA-------QALERRAYLGLLRQAAR-DAEALKALWK--ALPRAERRDPELAAAYARALI- 204

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  255 spnhavvhgnlacvyyEQGLIDLAIDTYRRAIELQPHfpDAycnLANALKE--KGSVAEAEECYNTALRLCPTHADSLNN 332
Cdd:COG3071    205 ----------------ALGDHDEAERLLREALKRQWD--PR---LVRLYGRlqGGDPAKQLKRAEKWLKKHPNDPDLLLA 263

                          330       340       350       360       370
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2024496797  333 LANIKREQGNIEEAVRLYRKALEVFPEfAAAHSNLASVLQQQGKLQEALMHYKEAIR 389
Cdd:COG3071    264 LGRLCLRNQLWGKAREYLEAALALRPS-AEAYAELARLLEQLGDPEEAAEHYRKALA 319
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 395-428 6.79e-05

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 40.89  E-value: 6.79e-05
                            10        20        30
                    ....*....|....*....|....*....|....
gi 2024496797   395 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 428
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 264-327 7.83e-05

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 41.55  E-value: 7.83e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2024496797  264 NLACVYYEQGLIDLAIDTYRRAIELQPHFPD---AYCNLANALKEKGSVAEAEECYNTALRLCPTHA 327
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALARFPESPDaaaALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 298-358 8.30e-05

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 41.55  E-value: 8.30e-05
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024496797  298 NLANALKEKGSVAEAEECYNTALRL---CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP 358
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALARfpeSPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
TPR_1 pfam00515
Tetratricopeptide repeat;
429-462 9.94e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 40.48  E-value: 9.94e-05
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2024496797  429 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 462
Cdd:pfam00515    1 AKALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 24-190 1.02e-04

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 45.96  E-value: 1.02e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   24 LAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRsahfstlAIKqnplLAEAYSNLGnvykeRG 103
Cdd:PRK11788   110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQK-------AID----VAERLEKLG-----GD 173

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  104 QLQEAIEHYrhalrlkpdfidgYINLAAALVAAGDMEGAVQAYVSALQYNPDlyCVRS--DLGNLLKALGRLEEAKACYL 181
Cdd:PRK11788   174 SLRVEIAHF-------------YCELAQQALARGDLDAARALLKKALAADPQ--CVRAsiLLGDLALAQGDYAAAIEALE 238


                   ....*....
gi 2024496797  182 KAIETQPNF 190
Cdd:PRK11788   239 RVEEQDPEY 247
Mgr3-like cd24145
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...
 264-391 1.07e-04

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.


Pssm-ID: 467945 [Multi-domain]  Cd Length: 307  Bit Score: 45.42  E-value: 1.07e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  264 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKgsvAEAEECYNTALRLCPTHADSLNNLANIKREQGNI 343
Cdd:cd24145    152 ELATAYDLYGRFCLALPLYMQALSLKGQILLSQANCHSLVLMN---NEAAELALHALRKPLSSTLIEASRLPQKSRDQLL 228

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024496797  344 EEAVRLYRKALEVF---------PE----FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS 391
Cdd:cd24145    229 EAALKWAQKALDVAksikpkdrdPEcdqaCALALYNLGVIAEMLGNLDEARKLYKEAISLA 289
TPR_7 pfam13176
Tetratricopeptide repeat;
91-121 1.17e-04

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 40.22  E-value: 1.17e-04
                           10        20        30
                   ....*....|....*....|....*....|.
gi 2024496797   91 AYSNLGNVYKERGQLQEAIEHYRHALRLKPD 121
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALALAKD 31
PRK11788 PRK11788
tetratricopeptide repeat protein; Provisional
 241-364 1.19e-04

tetratricopeptide repeat protein; Provisional


Pssm-ID: 236983 [Multi-domain]  Cd Length: 389  Bit Score: 45.57  E-value: 1.19e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  241 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEECYNTA 319
Cdd:PRK11788   196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPeYLSEVLPKLMECYQALGDEAEGLEFLRRA 275

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*
gi 2024496797  320 LRLCPThADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 364
Cdd:PRK11788   276 LEEYPG-ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFH 319
TPR_19 pfam14559
Tetratricopeptide repeat;
103-155 1.28e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 41.03  E-value: 1.28e-04
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 2024496797  103 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 155
Cdd:pfam14559    2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPD 54
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 77-288 1.33e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 45.31  E-value: 1.33e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   77 FSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDfiDG---YINLAAAlvaagdMEG--AVQAY---VS 148
Cdd:cd24142     22 FLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPD--GGyekYLYLGQL------SGGeeALQYYekgIE 93

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  149 ALQynpdlycvrsdlgNLLKALGRLEEAKACYLKAIETQpnfavawsnLGCVFNAQGEIWLAIHHFEKavtldpnflDAy 228
Cdd:cd24142     94 ILE-------------EELQALQAASAEAEEEAEELKRK---------LSSALCALAEIYMTDLCDEP---------DA- 141

                          170       180       190       200       210       220
                   ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2024496797  229 inlgnvlkEARifdraVAAYL-RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 288
Cdd:cd24142    142 --------EQR-----CEELItKALELDPTNPEALQTLASLRISQQRPDEAKEALRRSLEL 189
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 24-150 1.67e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.84  E-value: 1.67e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   24 LAELAHREyqaGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQcRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 103
Cdd:TIGR02917  776 LAELYLAQ---KDYDKAIKHYQTVVKKAPDNAVVLNNLAWLYLE-LKDPRALEYAERALKLAPNIPAILDTLGWLLVEKG 851

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*..
gi 2024496797  104 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 150
Cdd:TIGR02917  852 EADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898
COG3899 COG3899
Predicted ATPase [General function prediction only];
24-178 1.68e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 46.00  E-value: 1.68e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   24 LAELAHREYQAGDFEAAERHC---------MQLWRQEPDNTGVLL--LLSSIHFQCRRLDRSAHFSTLAIK------QNP 86
Cdd:COG3899    748 LLELAEALYLAGRFEEAEALLeralaaralAALAALRHGNPPASAraYANLGLLLLGDYEEAYEFGELALAlaerlgDRR 827

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   87 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNL 166
Cdd:COG3899    828 LEARALFNLGFILHWLGPLREALELLREALEAGLETGDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAAAAALAAA 907

                          170
                   ....*....|..
gi 2024496797  167 LKALGRLEEAKA 178
Cdd:COG3899    908 AAAAALAAAELA 919
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 429-462 1.83e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 39.74  E-value: 1.83e-04
                            10        20        30
                    ....*....|....*....|....*....|....
gi 2024496797   429 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 462
Cdd:smart00028    1 AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_10 pfam13374
Tetratricopeptide repeat;
88-118 2.47e-04

Tetratricopeptide repeat;


Pssm-ID: 463861 [Multi-domain]  Cd Length: 42  Bit Score: 39.41  E-value: 2.47e-04
                           10        20        30
                   ....*....|....*....|....*....|.
gi 2024496797   88 LAEAYSNLGNVYKERGQLQEAIEHYRHALRL 118
Cdd:pfam13374    1 TASSLNNLANALRAQGRYDEAEELLEEALAI 31
TPR_17 pfam13431
Tetratricopeptide repeat;
315-348 2.51e-04

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 39.06  E-value: 2.51e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2024496797  315 CYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 348
Cdd:pfam13431    1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_11 pfam13414
TPR repeat;
300-341 2.82e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 39.38  E-value: 2.82e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 2024496797  300 ANALKEKGSVAEAEECYNTALRLCPTHADSLNNLANIKREQG 341
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
COG3899 COG3899
Predicted ATPase [General function prediction only];
24-397 2.98e-04

Predicted ATPase [General function prediction only];


Pssm-ID: 443106 [Multi-domain]  Cd Length: 1244  Bit Score: 44.85  E-value: 2.98e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   24 LAELAHREYQAGDFEAAERH---CMQLWRQEPDNTG---VLLLLSSIHFQCRRLDRSAHFSTLAIKQN------------ 85
Cdd:COG3899    708 LLRAARRALARGAYAEALRYlerALELLPPDPEEEYrlaLLLELAEALYLAGRFEEAEALLERALAARalaalaalrhgn 787

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   86 -PLLAEAYSNLGNVYkeRGQLQEAIEHYRHALRLKPDFID------GYINLAAALVAAGDMEGAVQAYVSALQYnpDLYC 158
Cdd:COG3899    788 pPASARAYANLGLLL--LGDYEEAYEFGELALALAERLGDrrlearALFNLGFILHWLGPLREALELLREALEA--GLET 863

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  159 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSnLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYinlgnvlkEA 238
Cdd:COG3899    864 GDAALALLALAAAAAAAAAAAALAAAAAAAARLLAAA-AAALAAAAAAAALAAAELARLAAAAAAAAALA--------LA 934

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  239 RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR---AIELQPHFPDAYCNLANALKEKGSVAEAEEC 315
Cdd:COG3899    935 AAAAAAAAAALAAAAAAAALAAALALAAAAAAAAAAALAAAAAAAAaaaAAAAAAALEAAAAALLALLAAAAAAAAAAAA 1014

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  316 YNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA 395
Cdd:COG3899   1015 LAAALLAAALAALAAAAAAAALLAAAAALALLAALAAAAAAAAAAAALAAAAALLAAAAAAAAAAAAAAAAAALAAALAA 1094


                   ..
gi 2024496797  396 DA 397
Cdd:COG3899   1095 AA 1096
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 16-178 3.06e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.07  E-value: 3.06e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   16 KRMLSFQGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSA-HFSTLaIKQNPLLAEAYSN 94
Cdd:TIGR02917  731 KRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIkHYQTV-VKKAPDNAVVLNN 809

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   95 LGNVYKERGQlQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE 174
Cdd:TIGR02917  810 LAWLYLELKD-PRALEYAERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKA 888


                   ....
gi 2024496797  175 EAKA 178
Cdd:TIGR02917  889 EARK 892
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
180-355 3.16e-04

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 43.72  E-value: 3.16e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  180 YLKAIETQPNFAVAWSNLGCVFNAQGEIWLAihhfEKAVTLDPNFlDAYINLGNVLKEARIFDRAVAAYLRALS-LSPNH 258
Cdd:COG4700     49 VLPELRNSRDARRVQRAARNALDPGRELREL----EKALEFADTV-QNRVRLADALLELGRYDEAIELYEEALTgIFADD 123

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  259 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF--PDAYCNLANALKEKGSVAEAEECYNTALRLCPtHADSLNNLANI 336
Cdd:COG4700    124 PHILLGLAQALFELGRYAEALETLEKLIAKNPDFksSDAHLLYARALEALGDLEAAEAELEALARRYS-GPEARYRYAKF 202

                          170
                   ....*....|....*....
gi 2024496797  337 KREQGNIEEAVRLYRKALE 355
Cdd:COG4700    203 LARQGRTAEAKELLEEILD 221
SNAP cd15832
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ...
 276-430 3.27e-04

Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.


Pssm-ID: 276937 [Multi-domain]  Cd Length: 278  Bit Score: 43.72  E-value: 3.27e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  276 DLAIDTYRRAIELQ-----PHfpDA---YCNLANALKeKGSVAEAEECYNTALRL------CPTHADSLNNLANI-KREQ 340
Cdd:cd15832     49 EEAGDAFLKAAECQlkldsKH--DAanaYVEAAKCYK-KVDPQEAVNCLEKAIEIytemgrFRQAAKHLKEIAELyENEL 125

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  341 GNIEEAVRLYRKALEVFP-EFAAAHSN-----LASVLQQQGKLQEALMHYKEAIRISptfadaysnMGNTL-----KE-- 407
Cdd:cd15832    126 GDLDKAIEAYEQAADYYEgEGANSLANkcylkVADLAAQLEDYDKAIEIYEQVARSS---------LENNLlkysaKDyf 196

                          170       180       190
                   ....*....|....*....|....*....|..
gi 2024496797  408 ---------MQDVQGALQCYTRAIQINPAFAD 430
Cdd:cd15832    197 lkaglchlaAGDVVAAQRALEKYAELDPSFAG 228
TPR_17 pfam13431
Tetratricopeptide repeat;
281-314 3.61e-04

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 38.68  E-value: 3.61e-04
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2024496797  281 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEE 314
Cdd:pfam13431    1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 327-359 3.81e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 38.66  E-value: 3.81e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2024496797  327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 359
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
C39_PA2778_fam NF033920
PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family ...
 210-290 3.93e-04

PA2778 family cysteine peptidase; Members of this family are MEROPS classification C39 family cysteine peptidases, a group that includes many processing enzyme for peptide natural products such as lantibiotics and other bacteriocins. This family, more specifically, includes PA2778 as found in Pseudomonas aeruginosa. All members of the defining seed alignment are encoded in the vicinity of a homolog of PA2779 (see HMM NF033919). Note that the C-terminal region consists largely of tetratricopeptide repeats (TPR), so classification using this HMM must be based on comparing the top domain score to the second gathering threshold (GA2).


Pssm-ID: 468245 [Multi-domain]  Cd Length: 255  Bit Score: 43.31  E-value: 3.93e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  210 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 289
Cdd:NF033920   175 ALAAYQTATKRWPDSWLAYFGLGNAAYAAGDYAAAAAAFRQAVERHPDSAAAWNNLAYALAAQGCTAQARAAAECALALA 254


                   .
gi 2024496797  290 P 290
Cdd:NF033920   255 P 255
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 293-325 4.42e-04

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 38.66  E-value: 4.42e-04
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2024496797  293 PDAYCNLANALKEKGSVAEAEECYNTALRLCPT 325
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
SNAP pfam14938
Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are ...
 294-452 4.54e-04

Soluble NSF attachment protein, SNAP; The soluble NSF attachment protein (SNAP) proteins are involved in vesicular transport between the endoplasmic reticulum and Golgi apparatus. They act as adaptors between SNARE (integral membrane SNAP receptor) proteins and NSF (N-ethylmaleimide-sensitive factor). They are structurally similar to TPR repeats.


Pssm-ID: 405606 [Multi-domain]  Cd Length: 273  Bit Score: 43.33  E-value: 4.54e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  294 DAYCNLANALKEKGSVAEAEECYNTALRlCPTHADSLNNLAN--------IKReqGNIEEAVRLYRKALEVFpefaaahs 365
Cdd:pfam14938   28 DLYIQAANAYKLAKNWEEAGEAFEKAAE-CQLKLGSKDEAANayveaakcYKK--VDPEEAVRALEKAIEIY-------- 96

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  366 nlasvlQQQGKLQEALMHYKEAirisptfADAYSNmgntlkEMQDVQGALQCYTRA---IQINPAFADAHSNL---ASIH 439
Cdd:pfam14938   97 ------TEMGRFRRAAKHKKEI-------AELYEQ------ELGDLEKAIEAYEQAadwYEGEGASALANKCYlkvADLS 157

                          170
                   ....*....|...
gi 2024496797  440 KDSGNIPEAIASY 452
Cdd:pfam14938  158 AELEDYPKAIEIY 170
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 81-288 4.62e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 44.20  E-value: 4.62e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   81 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAaalvaagdmegavqayvsALQYNpdlycvr 160
Cdd:TIGR00990  391 ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLG------------------VTQYK------- 445

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  161 sdlgnllkaLGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARI 240
Cdd:TIGR00990  446 ---------EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516

                          170       180       190       200       210
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 2024496797  241 FDRAVAAYL-------RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 288
Cdd:TIGR00990  517 LFQWKQDFIeaenlceKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571
ACL4-like cd24142
Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 ...
 22-185 4.78e-04

Assembly chaperone of ribosomal protein L4 and similar proteins; Assembly chaperone of RPL4 (ACL4) acts as a chaperone for the L4 ribosomal subunit, encoded by RPL4A and RPL4B, and is required for hierarchical ribosome assembly. It is required for the soluble expression of newly synthesized RPL4 and for the protection of RPL4 from the Tom1-dependent cellular degradation machinery. ACL4 shields ribosomal protein L4 until timely release and insertion into the pre-ribosome is possible, once ribosomal protein L18 is present.


Pssm-ID: 467942 [Multi-domain]  Cd Length: 306  Bit Score: 43.39  E-value: 4.78e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   22 QGLAELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL-AEAYSNLgnvyk 100
Cdd:cd24142      1 DELLEKAEELLDQGNFELALKFLQRALELEPNNVEALELLGEILLELGDVEEAREVLLRAIELDPDGgYEKYLYL----- 75

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  101 erGQL---QEAIEHYR----------HALRLKPDFIDGYIN-----LAAALVAAG-----------DMEGAVQAYV-SAL 150
Cdd:cd24142     76 --GQLsggEEALQYYEkgieileeelQALQAASAEAEEEAEelkrkLSSALCALAeiymtdlcdepDAEQRCEELItKAL 153

                          170       180       190
                   ....*....|....*....|....*....|....*
gi 2024496797  151 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 185
Cdd:cd24142    154 ELDPTNPEALQTLASLRISQQRPDEAKEALRRSLE 188
TPR_19 pfam14559
Tetratricopeptide repeat;
374-438 4.96e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 39.49  E-value: 4.96e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024496797  374 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASI 438
Cdd:pfam14559    1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLAKL 65
TPR_19 pfam14559
Tetratricopeptide repeat;
340-380 5.05e-04

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 39.10  E-value: 5.05e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|.
gi 2024496797  340 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA 380
Cdd:pfam14559    1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEA 41
TPR_1 pfam00515
Tetratricopeptide repeat;
163-190 5.44e-04

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 38.17  E-value: 5.44e-04
                           10        20
                   ....*....|....*....|....*...
gi 2024496797  163 LGNLLKALGRLEEAKACYLKAIETQPNF 190
Cdd:pfam00515    7 LGNAYFKLGKYDEALEYYEKALELNPNN 34
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 230-290 5.47e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 39.24  E-value: 5.47e-04
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2024496797  230 NLGNVLKEARIFDRAVAAYLRAL---SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP 290
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALarfPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAP 65
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 340-448 6.38e-04

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 43.07  E-value: 6.38e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  340 QGNIEEAVRLYRKALEvfpeFAAAHSN----------LASVLQQQGKLQEALMHYKEAIR--------ISPTFADAYSNM 401
Cdd:pfam17874   53 LGDLDAALQAMREAEA----LARRADSphvtlwallqQGEILRAQGRLHQALETYQQALQlardhglqHLPLHGFLLVGL 128

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|..
gi 2024496797  402 GNTLKEMQDVQGALQCYTRAIQI-----NPAFADAHSNLASIHKDSGNIPEA 448
Cdd:pfam17874  129 ADLLYEWNDLEEAEQHAQQGIQLgrqwePDAAVDAYVLLARIALAQGELEEA 180
TPR COG0790
TPR repeat [General function prediction only];
226-389 6.67e-04

TPR repeat [General function prediction only];


Pssm-ID: 440553 [Multi-domain]  Cd Length: 241  Bit Score: 42.61  E-value: 6.67e-04
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  226 DAYINLGNVLKEARI----FDRAVAAYLRALSLspNHAVVHGNLAcVYYEQGL-----IDLAIDTYRRAIELQphFPDAY 296
Cdd:COG0790     64 EAQYNLGLMYAEGRGvpkdYEKALEWFEKAAEQ--GDAEAQYNLG-LMYEEGLgvpqdYAKALEWYEKAAEQG--DADAQ 138

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  297 CNLANALKE----KGSVAEAEECYNTALRLcpTHADSLNNLANIKRE----QGNIEEAVRLYRKALEVfpEFAAAHSNLA 368
Cdd:COG0790    139 YNLGLLYLNgegvPKDPAKAAEWYRKAAEQ--GDADAQYNLGVLYENgrgvPKDPAKALEWYRKAAEQ--GDADAQYNLG 214

                          170       180
                   ....*....|....*....|....*.
gi 2024496797  369 sVLQQQGK-----LQEALMHYKEAIR 389
Cdd:COG0790    215 -RLYLNGEgvekdLEKALRWLRKAAE 239
TPR_17 pfam13431
Tetratricopeptide repeat;
81-110 6.98e-04

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 37.91  E-value: 6.98e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 2024496797   81 AIKQNPLLAEAYSNLGNVYKERGQLQEAIE 110
Cdd:pfam13431    5 ALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_11 pfam13414
TPR repeat;
232-273 9.08e-04

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 37.84  E-value: 9.08e-04
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|..
gi 2024496797  232 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG 273
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYKLG 42
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
438-473 9.75e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 39.38  E-value: 9.75e-04
                           10        20        30
                   ....*....|....*....|....*....|....*.
gi 2024496797  438 IHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 473
Cdd:COG3063      1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLL 36
TPR_8 pfam13181
Tetratricopeptide repeat;
163-189 1.11e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 37.38  E-value: 1.11e-03
                           10        20
                   ....*....|....*....|....*..
gi 2024496797  163 LGNLLKALGRLEEAKACYLKAIETQPN 189
Cdd:pfam13181    7 LGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 429-461 1.13e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.50  E-value: 1.13e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2024496797  429 ADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 461
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_17 pfam13431
Tetratricopeptide repeat;
349-381 1.20e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 37.14  E-value: 1.20e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2024496797  349 LYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL 381
Cdd:pfam13431    1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 341-458 1.21e-03

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 40.36  E-value: 1.21e-03
                            10        20        30        40        50        60        70        80
                    ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   341 GNIEEAVRLYRKAL-----EVFPEFAAAhsnlASVLQQQGKLQEALMHYKEAIrisptfADAYSNMGntlkemqDVQGAL 415
Cdd:smart01043   19 ADPEAALALLEAALalyrgPLLADVPDE----DWAEAERERLRELRLEALEAL------AEALLALG-------RHEEAL 81

                            90       100       110       120
                    ....*....|....*....|....*....|....*....|...
gi 2024496797   416 QCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL 458
Cdd:smart01043   82 ALLERLLALDPLRERLHRLLMRALYRAGRRAEALRAYRRLRRL 124
TPR-S pfam20308
Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR ...
 36-133 1.34e-03

Tetratricopeptide Repeats-Sensor; This entry represents a sensor domain consisting of 7 TPR repeats forming a tightly-wound solenoid structure harbouring a deep central pocket. The TPR-S binding pocket is lined with several conserved aromatic and polar residues predicted to bind a NAD+-derived nucleotide in prokaryotic NAD+-derived nucleotide-activated effector conflict systems. It has been acquired at the base of the choanoflagellate-animal lineage as a core component of the ASK signalosome.


Pssm-ID: 466458 [Multi-domain]  Cd Length: 105  Bit Score: 39.18  E-value: 1.34e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   36 DFEAAeRHCMQLWRQEPDNTGVLLLLSsihF----QCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER--------G 103
Cdd:pfam20308    1 DYDAA-VELLEALLALPEDARAQEQLA---LalarLPGDRDEALDVLEDLIERLGEDPETLGLLGRIYKRLwlesaedrE 76

                           90       100       110
                   ....*....|....*....|....*....|
gi 2024496797  104 QLQEAIEHYRHALRLKPDFIDGyINLAAAL 133
Cdd:pfam20308   77 ALDQAIEAYRKAFELDPDDYPG-INAATLL 105
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 395-426 1.42e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 37.12  E-value: 1.42e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2024496797  395 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 426
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDP 32
Mgr3-like cd24145
Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; ...
 91-220 1.44e-03

Mitochondrial inner membrane i-AAA protease supercomplex subunit Mgr3 and similar proteins; Mgr3 (also called mitochondrial genome-required protein 3) is a component of the mitochondrial inner membrane i-AAA protease supercomplex, which degrades misfolded mitochondrial proteins. The supercomplex is composed of Mgr1, Mgr3, and Yme1. Mgr3, together with Mgr1, functions in an adapter complex that targets substrates to the i-AAA protease for degradation.


Pssm-ID: 467945 [Multi-domain]  Cd Length: 307  Bit Score: 41.95  E-value: 1.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   91 AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAgdmegAVQAYVSALQYNPDLYCVRSDLGNLLKA- 169
Cdd:cd24145    149 FLEELATAYDLYGRFCLALPLYMQALSLKGQILLSQANCHSLVLMN-----NEAAELALHALRKPLSSTLIEASRLPQKs 223

                           90       100       110       120       130       140
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024496797  170 -LGRLEEAKACYLKAI-------------ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 220
Cdd:cd24145    224 rDQLLEAALKWAQKALdvaksikpkdrdpECDQACALALYNLGVIAEMLGNLDEARKLYKEAISL 288
TPR_1 pfam00515
Tetratricopeptide repeat;
226-258 1.47e-03

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 37.02  E-value: 1.47e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2024496797  226 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 258
Cdd:pfam00515    2 KALYNLGNAYFKLGKYDEALEYYEKALELNPNN 34
ST7 cd11557
Suppression of tumorigenicity 7; ST7 is a metazoan protein that behaves as a tumor suppressor ...
 279-426 1.49e-03

Suppression of tumorigenicity 7; ST7 is a metazoan protein that behaves as a tumor suppressor in human cancer cells. It appears to localize to the cytoplasm and plasma membrane, and may mediate tumor suppression by regulating genes that are involved in oncogenic pathways and/or maintain cellular structure. It has been suggested that the suppression of tumorigenicity is associated with a function in mediating the remodeling of the extracellular matrix. However, somatic mutations of ST7 have not been observed as being commonly associated with molecular pathogenesis in various human neoplasias.


Pssm-ID: 211407 [Multi-domain]  Cd Length: 458  Bit Score: 42.37  E-value: 1.49e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  279 IDTYRRAIELQPHFPDAYCNLANalKEKGSVAEAEECYNTALRLC------------------PTHADSLNNLANIK--- 337
Cdd:cd11557    142 IKAAHEALELNPECATALILLAE--EEAQTILEAEKLLKQALKAAeanyrksqqlqhqdpqheAVHRRDTNVLVYIKrrl 219

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  338 ----REQGNIEEAVRLYRKALEVFPEFAAA--HSNLASVL---QQQGKLQEALMHYKEA-----IRISPTFA-------- 395
Cdd:cd11557    220 amcaRKLGRLKEAVKMMRDLMKEFPLLSVLniHENLIEALlelQAYADVQAVLAKYDDIslpksATICYTAAllkarava 299

                          170       180       190
                   ....*....|....*....|....*....|....*.
gi 2024496797  396 -----DAYSNMGNTLKEMQdvqgALQCYTRAIQINP 426
Cdd:cd11557    300 dkfspEVASRRGLSTAEMN----AVEAIHRAVEFNP 331
TPR_7 pfam13176
Tetratricopeptide repeat;
329-356 1.66e-03

Tetratricopeptide repeat;


Pssm-ID: 433012 [Multi-domain]  Cd Length: 36  Bit Score: 37.13  E-value: 1.66e-03
                           10        20
                   ....*....|....*....|....*...
gi 2024496797  329 SLNNLANIKREQGNIEEAVRLYRKALEV 356
Cdd:pfam13176    1 ALLNLGRIYRKLGDYDEAISLYEQALAL 28
TPR_17 pfam13431
Tetratricopeptide repeat;
383-416 2.04e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 36.75  E-value: 2.04e-03
                           10        20        30
                   ....*....|....*....|....*....|....
gi 2024496797  383 HYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQ 416
Cdd:pfam13431    1 LYLKALELDPNNADAYYNLAVLLLELGQSETALQ 34
TPR_19 pfam14559
Tetratricopeptide repeat;
410-466 2.54e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 37.18  E-value: 2.54e-03
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2024496797  410 DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAY 466
Cdd:pfam14559    3 DYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYA 59
StaR_like cd05804
StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member ...
 120-280 2.54e-03

StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.


Pssm-ID: 100115 [Multi-domain]  Cd Length: 355  Bit Score: 41.50  E-value: 2.54e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  120 PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDlycvRSD---------LGNLLKalGRLEEAKACYLKAIETQPNF 190
Cdd:cd05804      3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAA----RATererahveaLSAWIA--GDLPKALALLEQLLDDYPRD 76

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  191 AVAWSNLGCVFNAQGEIWLAiHHFEKAVTL-DP-NFLDAYIN--LGNVLKEARIFDRAVAAYLRALSLSPN-----HAVV 261
Cdd:cd05804     77 LLALKLHLGAFGLGDFSGMR-DHVARVLPLwAPeNPDYWYLLgmLAFGLEEAGQYDRAEEAARRALELNPDdawavHAVA 155

                          170
                   ....*....|....*....
gi 2024496797  262 HgnlacVYYEQGLIDLAID 280
Cdd:cd05804    156 H-----VLEMQGRFKEGIA 169
PRK09782 PRK09782
bacteriophage N4 receptor, outer membrane subunit; Provisional
 34-163 2.87e-03

bacteriophage N4 receptor, outer membrane subunit; Provisional


Pssm-ID: 236624 [Multi-domain]  Cd Length: 987  Bit Score: 41.82  E-value: 2.87e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797   34 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLlAEAYSNLGNVYKERGQLQEAIEHYR 113
Cdd:PRK09782   555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLR 633

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|
gi 2024496797  114 HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDL 163
Cdd:PRK09782   634 AALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQL 683
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 226-258 3.02e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 3.02e-03
                            10        20        30
                    ....*....|....*....|....*....|...
gi 2024496797   226 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 258
Cdd:smart00028    2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 163-190 3.17e-03

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 36.27  E-value: 3.17e-03
                            10        20
                    ....*....|....*....|....*...
gi 2024496797   163 LGNLLKALGRLEEAKACYLKAIETQPNF 190
Cdd:smart00028    7 LGNAYLKLGDYDEALEYYEKALELDPNN 34
TPR_14 pfam13428
Tetratricopeptide repeat;
333-370 3.24e-03

Tetratricopeptide repeat;


Pssm-ID: 463874 [Multi-domain]  Cd Length: 44  Bit Score: 36.25  E-value: 3.24e-03
                           10        20        30
                   ....*....|....*....|....*....|....*...
gi 2024496797  333 LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 370
Cdd:pfam13428    7 LARALLALGDPDEALALLERALALDPDDPEAWLALAQL 44
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 203-307 3.44e-03

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 39.66  E-value: 3.44e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  203 AQGEIWLAIHHFEKAVTLDPNFLD-AYI--NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG------ 273
Cdd:PRK02603    47 ADGEYAEALENYEEALKLEEDPNDrSYIlyNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGekaeea 126

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|..
gi 2024496797  274 --------LIDLAIDTYRRAIELqphFPDAYCNLANALKEKG 307
Cdd:PRK02603   127 gdqdeaeaLFDKAAEYWKQAIRL---APNNYIEAQNWLKTTG 165
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 400-461 3.65e-03

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 36.93  E-value: 3.65e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024496797  400 NMGNTLKEMQDVQGALQCYTRAIQIN---PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 461
Cdd:pfam13432    2 ALARAALRAGDYDDAAAALEAALARFpesPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPG 66
TPR_17 pfam13431
Tetratricopeptide repeat;
179-211 4.06e-03

Tetratricopeptide repeat;


Pssm-ID: 433201 [Multi-domain]  Cd Length: 34  Bit Score: 35.98  E-value: 4.06e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2024496797  179 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAI 211
Cdd:pfam13431    1 LYLKALELDPNNADAYYNLAVLLLELGQSETAL 33
TPR_8 pfam13181
Tetratricopeptide repeat;
327-359 4.58e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 35.45  E-value: 4.58e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2024496797  327 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 359
Cdd:pfam13181    1 AEAYYNLGLIYLKLGDYEEAKEYYEKALELDPD 33
TPR_11 pfam13414
TPR repeat;
198-237 4.99e-03

TPR repeat;


Pssm-ID: 315977 [Multi-domain]  Cd Length: 42  Bit Score: 35.91  E-value: 4.99e-03
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|
gi 2024496797  198 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE 237
Cdd:pfam13414    1 GDAYYEQGKYEEAIEAYKKALKLDPDNPEAYYNLGLAYYK 40
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 132-223 5.45e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 37.66  E-value: 5.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  132 ALVAAGDMEGAVQAYVSALQYNPD-------LYcvrsDLGNLLKALGRLEEAKACYLKAIETQPN---FAVAWSNLGCVF 201
Cdd:COG1729      2 ALLKAGDYDEAIAAFKAFLKRYPNsplapdaLY----WLGEAYYALGDYDEAAEAFEKLLKRYPDspkAPDALLKLGLSY 77

                           90       100
                   ....*....|....*....|..
gi 2024496797  202 NAQGEIWLAIHHFEKAVTLDPN 223
Cdd:COG1729     78 LELGDYDKARATLEELIKKYPD 99
COG4700 COG4700
Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];
327-457 5.96e-03

Uncharacterized conserved protein ECs_4300, contains TPR-like domain [Function unknown];


Pssm-ID: 443735 [Multi-domain]  Cd Length: 249  Bit Score: 39.48  E-value: 5.96e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  327 ADSLNN---LANIKREQGNIEEAVRLYRKALE-VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF--ADAYSN 400
Cdd:COG4700     86 ADTVQNrvrLADALLELGRYDEAIELYEEALTgIFADDPHILLGLAQALFELGRYAEALETLEKLIAKNPDFksSDAHLL 165

                           90       100       110       120       130
                   ....*....|....*....|....*....|....*....|....*....|....*..
gi 2024496797  401 MGNTLKEMQDVQGALQCYTRAIQINPaFADAHSNLASIHKDSGNIPEAIASYRTALK 457
Cdd:COG4700    166 YARALEALGDLEAAEAELEALARRYS-GPEARYRYAKFLARQGRTAEAKELLEEILD 221
TPR_8 pfam13181
Tetratricopeptide repeat;
294-324 6.16e-03

Tetratricopeptide repeat;


Pssm-ID: 404131 [Multi-domain]  Cd Length: 33  Bit Score: 35.45  E-value: 6.16e-03
                           10        20        30
                   ....*....|....*....|....*....|.
gi 2024496797  294 DAYCNLANALKEKGSVAEAEECYNTALRLCP 324
Cdd:pfam13181    2 EAYYNLGLIYLKLGDYEEAKEYYEKALELDP 32
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 361-393 6.29e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 35.19  E-value: 6.29e-03
                           10        20        30
                   ....*....|....*....|....*....|...
gi 2024496797  361 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 393
Cdd:pfam07719    1 AEALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 340-423 6.74e-03

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 39.99  E-value: 6.74e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  340 QGNIEEAVRLYRKAL-----EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRisptFADAYSNMGNT------LKEM 408
Cdd:pfam17874   14 KGDAERALELAEQALallpeDDLLARGLATFVLGEAYLCLGDLDAALQAMREAEA----LARRADSPHVTlwallqQGEI 89

                           90
                   ....*....|....*....
gi 2024496797  409 QDVQG----ALQCYTRAIQ 423
Cdd:pfam17874   90 LRAQGrlhqALETYQQALQ 108
TPR_19 pfam14559
Tetratricopeptide repeat;
307-368 7.42e-03

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 36.02  E-value: 7.42e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2024496797  307 GSVAEAEECYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 368
Cdd:pfam14559    2 GDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRYAALLA 63
TPR_9 pfam13371
Tetratricopeptide repeat;
231-295 7.93e-03

Tetratricopeptide repeat;


Pssm-ID: 463860 [Multi-domain]  Cd Length: 73  Bit Score: 36.04  E-value: 7.93e-03
                           10        20        30        40        50        60
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2024496797  231 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDA 295
Cdd:pfam13371    1 LKAIYLREEDWERALAVVERLLLLAPDDPEERRDRGLLYAQLGCFQAALEDLEAYLELAPDAPDA 65
SNAP cd15832
Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the ...
 342-455 8.56e-03

Soluble N-ethylmaleimide-sensitive factor (NSF) Attachment Protein family; Members of the soluble NSF attachment protein (SNAP) family are involved in intracellular membrane trafficking, including vesicular transport between the endoplasmic reticulum and Golgi apparatus. Higher eukaryotes contain three isoforms of SNAPs: alpha, beta, and gamma. Alpha-SNAP is universally present in eukaryotes and acts as an adaptor protein between SNARE (integral membrane SNAP receptor) and NSF for recruitment to the 20S complex. Beta-SNAP is brain-specific and shares high sequence identity (about 85%) with alpha-SNAP. Gamma-SNAP is weakly related (about 20-25% identity) to the two other isoforms, and is ubiquitous. It may help regulate the activity of the 20S complex. The X-ray structures of vertebrate gamma-SNAP and yeast Sec17, a SNAP family member, show similar all-helical structures consisting of an N-terminal extended twisted sheet of four Tetratricopeptide repeat (TPR)-like helical hairpins and a C-terminal helical bundle.


Pssm-ID: 276937 [Multi-domain]  Cd Length: 278  Bit Score: 39.48  E-value: 8.56e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2024496797  342 NIEEAVRLYRKAlevfpefaAAHSNLASVLQQQGK--LQEALMHYK-----EAirisptfADAYSNMGNTLKEMqDVQGA 414
Cdd:cd15832     27 KYEEAAELYEKA--------ANAFKLAKNWEEAGDafLKAAECQLKldskhDA-------ANAYVEAAKCYKKV-DPQEA 90

                           90       100       110       120
                   ....*....|....*....|....*....|....*....|....*....
gi 2024496797  415 LQCYTRAIQI-------NPAfADAHSNLASIH-KDSGNIPEAIASYRTA 455
Cdd:cd15832     91 VNCLEKAIEIytemgrfRQA-AKHLKEIAELYeNELGDLDKAIEAYEQA 138
TPR_2 pfam07719
Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats ...
 226-257 8.87e-03

Tetratricopeptide repeat; This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515.


Pssm-ID: 429619 [Multi-domain]  Cd Length: 33  Bit Score: 34.81  E-value: 8.87e-03
                           10        20        30
                   ....*....|....*....|....*....|..
gi 2024496797  226 DAYINLGNVLKEARIFDRAVAAYLRALSLSPN 257
Cdd:pfam07719    2 EALYNLGLAYYKLGDYEEALEAYEKALELDPN 33
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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