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beta/gamma crystallin domain-containing protein 1 isoform X3 [Gallus gallus]
List of domain hits
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Name | Accession | Description | Interval | E-value | |||
beta-trefoil_Ricin_CRYBG1 | cd23464 | ricin B-type lectin domain, beta-trefoil fold, found in beta/gamma crystallin ... |
1382-1518 | 2.11e-88 | |||
ricin B-type lectin domain, beta-trefoil fold, found in beta/gamma crystallin domain-containing protein 1 (CRYBG1) and similar proteins; CRYBG1, also called absent in melanoma 1 protein (AIM1), may function as a suppressor of malignant melanoma. It may exert its effects through interactions with the cytoskeleton. CRYBG1 belongs to the beta/gamma-crystallin family. It contains a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. : Pssm-ID: 467342 Cd Length: 137 Bit Score: 283.23 E-value: 2.11e-88
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1022-1110 | 4.24e-35 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. : Pssm-ID: 459639 Cd Length: 82 Bit Score: 128.77 E-value: 4.24e-35
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1301-1380 | 9.87e-29 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. : Pssm-ID: 459639 Cd Length: 82 Bit Score: 110.66 E-value: 9.87e-29
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1118-1201 | 5.11e-27 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. : Pssm-ID: 459639 Cd Length: 82 Bit Score: 105.65 E-value: 5.11e-27
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
927-1008 | 1.88e-20 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. : Pssm-ID: 459639 Cd Length: 82 Bit Score: 86.78 E-value: 1.88e-20
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Crystall super family | cl02528 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1214-1292 | 1.53e-15 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. The actual alignment was detected with superfamily member pfam00030: Pssm-ID: 470604 Cd Length: 82 Bit Score: 72.91 E-value: 1.53e-15
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Crystall super family | cl02528 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
829-917 | 4.67e-10 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. The actual alignment was detected with superfamily member smart00247: Pssm-ID: 470604 Cd Length: 82 Bit Score: 57.52 E-value: 4.67e-10
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Name | Accession | Description | Interval | E-value | |||
beta-trefoil_Ricin_CRYBG1 | cd23464 | ricin B-type lectin domain, beta-trefoil fold, found in beta/gamma crystallin ... |
1382-1518 | 2.11e-88 | |||
ricin B-type lectin domain, beta-trefoil fold, found in beta/gamma crystallin domain-containing protein 1 (CRYBG1) and similar proteins; CRYBG1, also called absent in melanoma 1 protein (AIM1), may function as a suppressor of malignant melanoma. It may exert its effects through interactions with the cytoskeleton. CRYBG1 belongs to the beta/gamma-crystallin family. It contains a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. Pssm-ID: 467342 Cd Length: 137 Bit Score: 283.23 E-value: 2.11e-88
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1022-1110 | 4.24e-35 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 128.77 E-value: 4.24e-35
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1301-1380 | 9.87e-29 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 110.66 E-value: 9.87e-29
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
1022-1110 | 1.31e-27 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 107.21 E-value: 1.31e-27
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1118-1201 | 5.11e-27 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 105.65 E-value: 5.11e-27
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
1301-1380 | 1.31e-25 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 101.82 E-value: 1.31e-25
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
1118-1201 | 5.45e-21 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 88.33 E-value: 5.45e-21
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
927-1008 | 1.88e-20 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 86.78 E-value: 1.88e-20
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
927-1008 | 5.82e-16 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 74.08 E-value: 5.82e-16
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1214-1292 | 1.53e-15 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 72.91 E-value: 1.53e-15
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
1214-1292 | 1.39e-11 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 61.76 E-value: 1.39e-11
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
829-917 | 4.67e-10 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 57.52 E-value: 4.67e-10
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RICIN | smart00458 | Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. |
1391-1513 | 2.09e-08 | |||
Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. Pssm-ID: 214672 [Multi-domain] Cd Length: 118 Bit Score: 54.05 E-value: 2.09e-08
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
836-919 | 5.44e-08 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 51.34 E-value: 5.44e-08
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Name | Accession | Description | Interval | E-value | |||
beta-trefoil_Ricin_CRYBG1 | cd23464 | ricin B-type lectin domain, beta-trefoil fold, found in beta/gamma crystallin ... |
1382-1518 | 2.11e-88 | |||
ricin B-type lectin domain, beta-trefoil fold, found in beta/gamma crystallin domain-containing protein 1 (CRYBG1) and similar proteins; CRYBG1, also called absent in melanoma 1 protein (AIM1), may function as a suppressor of malignant melanoma. It may exert its effects through interactions with the cytoskeleton. CRYBG1 belongs to the beta/gamma-crystallin family. It contains a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. Pssm-ID: 467342 Cd Length: 137 Bit Score: 283.23 E-value: 2.11e-88
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beta-trefoil_Ricin_CRYBG | cd23430 | ricin B-type lectin domain, beta-trefoil fold, found in the beta/gamma crystallin ... |
1385-1517 | 1.08e-59 | |||
ricin B-type lectin domain, beta-trefoil fold, found in the beta/gamma crystallin domain-containing protein (CRYBG) family; The CRYBG family includes three members: CRYBG1, CRYBG2, and CRYBG3/vlAKAP. CRYBG1, also called absent in melanoma 1 protein (AIM1), may function as a suppressor of malignant melanoma. It may exert its effects through interactions with the cytoskeleton. CRYBG2 is also called absent in melanoma 1-like protein (AIM1L). CRYBG3/vlAKAP, also called very large A-kinase anchor protein, is an anchoring protein that mediates the subcellular compartmentation of protein kinase A (PKA). It binds to the dimeric RII-alpha regulatory subunit of PKA (PRKAR2A/PRKAR2B). CRYBG proteins belong to the beta/gamma-crystallin family. They all contain a ricin B-type lectin domain with a beta-trefoil fold at the C-terminus. The beta-trefoil fold is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. Pssm-ID: 467308 [Multi-domain] Cd Length: 133 Bit Score: 200.89 E-value: 1.08e-59
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1022-1110 | 4.24e-35 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 128.77 E-value: 4.24e-35
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beta-trefoil_Ricin_CRYBG2 | cd23465 | ricin B-type lectin domain, beta-trefoil fold, found in beta/gamma crystallin ... |
1382-1514 | 1.30e-31 | |||
ricin B-type lectin domain, beta-trefoil fold, found in beta/gamma crystallin domain-containing protein 2 (CRYBG2) and similar proteins; CRYBG2, also called absent in melanoma 1-like protein (AIM1L), is a beta/gamma-crystallin family protein with a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. Pssm-ID: 467343 Cd Length: 136 Bit Score: 120.74 E-value: 1.30e-31
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beta-trefoil_Ricin_vlAKAP | cd23463 | ricin B-type lectin domain, beta-trefoil fold, found in very large A-kinase anchor protein ... |
1382-1514 | 4.72e-31 | |||
ricin B-type lectin domain, beta-trefoil fold, found in very large A-kinase anchor protein (vlAKAP) and similar proteins; vlAKAP, also called beta/gamma crystallin domain-containing protein 3 (CRYBG3), is an anchoring protein that mediates the subcellular compartmentation of protein kinase A (PKA). It binds to the dimeric RII-alpha regulatory subunit of PKA (PRKAR2A/PRKAR2B). vlAKAP belongs to the beta/gamma-crystallin family. It contains a ricin B-type lectin domain at the C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. Pssm-ID: 467341 Cd Length: 136 Bit Score: 119.08 E-value: 4.72e-31
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1301-1380 | 9.87e-29 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 110.66 E-value: 9.87e-29
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
1022-1110 | 1.31e-27 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 107.21 E-value: 1.31e-27
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1118-1201 | 5.11e-27 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 105.65 E-value: 5.11e-27
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
1301-1380 | 1.31e-25 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 101.82 E-value: 1.31e-25
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
1118-1201 | 5.45e-21 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 88.33 E-value: 5.45e-21
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
927-1008 | 1.88e-20 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 86.78 E-value: 1.88e-20
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
927-1008 | 5.82e-16 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 74.08 E-value: 5.82e-16
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
1214-1292 | 1.53e-15 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 72.91 E-value: 1.53e-15
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beta-trefoil_Ricin_GllA-1 | cd23454 | GllA-1 domain, beta-trefoil fold, found in Mucor circinelloides Gellins and similar proteins; ... |
1386-1514 | 2.33e-13 | |||
GllA-1 domain, beta-trefoil fold, found in Mucor circinelloides Gellins and similar proteins; Gellin proteins act as central effectors of wound-induced protoplasmic gelation. They possess ten related N-terminal beta-trefoil domains (Gll-1 to Gll-10) that contribute to distinct gelation-related activities. The beta-trefoil domains show low sequence similarity to members of the functionally diverse ricin B lectin domain family. They are characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain bears a potential sugar binding site. Gellin from M. circinelloides has been called GellinA (also known as GllA). The model corresponds to GllA-1 domain, which is a remote family member of the ricin B-type lectin domain. Pssm-ID: 467332 [Multi-domain] Cd Length: 136 Bit Score: 68.50 E-value: 2.33e-13
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
1214-1292 | 1.39e-11 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 61.76 E-value: 1.39e-11
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XTALbg | smart00247 | Beta/gamma crystallins; Beta/gamma crystallins |
829-917 | 4.67e-10 | |||
Beta/gamma crystallins; Beta/gamma crystallins Pssm-ID: 214583 Cd Length: 82 Bit Score: 57.52 E-value: 4.67e-10
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beta-trefoil_Ricin_EW29-like | cd23449 | ricin B-type lectin domain, beta-trefoil fold, found in Lumbricus terrestris 29-kDa ... |
1386-1514 | 5.01e-10 | |||
ricin B-type lectin domain, beta-trefoil fold, found in Lumbricus terrestris 29-kDa galactose-binding lectin (EW29) and similar proteins; EW29 is a galactose-binding lectin from the earthworm Lumbricus terrestris. It contains two ricin B-type lectin domains with a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The second ricin B-type lectin domain may harbor two sugar-binding pockets in subdomains alpha and gamma. EW29 uses these two sugar-binding sites for its function as a single domain-type hemagglutinin. Pssm-ID: 467327 [Multi-domain] Cd Length: 128 Bit Score: 58.84 E-value: 5.01e-10
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RICIN | smart00458 | Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. |
1391-1513 | 2.09e-08 | |||
Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. Pssm-ID: 214672 [Multi-domain] Cd Length: 118 Bit Score: 54.05 E-value: 2.09e-08
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beta-trefoil_Ricin-like | cd00161 | ricin B-type lectin domain, beta-trefoil fold; The ricin B-type lectin domain is a ... |
1386-1505 | 4.53e-08 | |||
ricin B-type lectin domain, beta-trefoil fold; The ricin B-type lectin domain is a carbohydrate-binding domain formed from presumed gene triplication. It shows a beta-trefoil fold characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. The ricin B-type lectin domain was originally found in Ricin, which is a legume lectin from the seeds of the castor bean plant, Ricinus communis. It is also found in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases, or proteases, which serve diverse functions such as inhibitory toxicity, enzymatic activity, and signal transduction. The ricin B-type lectin domain can be present in one or more copies and has been shown in some instances to bind simple sugars, such as galactose or lactose. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B-type lectin domain has also been referred as the (QxW)3 domain and the three homologous regions as the QxW repeats. A disulfide bond is also conserved in some QxW repeats. Pssm-ID: 467293 [Multi-domain] Cd Length: 134 Bit Score: 53.53 E-value: 4.53e-08
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Crystall | pfam00030 | Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity ... |
836-919 | 5.44e-08 | |||
Beta/Gamma crystallin; The alignment comprises two Greek key motifs since the similarity between them is very low. Pssm-ID: 459639 Cd Length: 82 Bit Score: 51.34 E-value: 5.44e-08
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beta-trefoil_Ricin_SCDase | cd23456 | ricin B-type lectin domain, beta-trefoil fold, found in Shewanella algae sphingolipid ceramide ... |
1386-1493 | 4.54e-06 | |||
ricin B-type lectin domain, beta-trefoil fold, found in Shewanella algae sphingolipid ceramide N-deacylase (SCDase) and similar proteins; SCDase (EC 3.5.1.69) is an enzyme which hydrolyzes the N-acyl linkage between fatty acid and sphingosine in ceramide of various glycosphingolipids and sphingomyelin. Shewanella algae SCDase contains two ricin B-type lectin domains at its C-terminus. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a sugar-binding pocket. Pssm-ID: 467334 [Multi-domain] Cd Length: 122 Bit Score: 47.35 E-value: 4.54e-06
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beta-trefoil_Ricin_DCDC1 | cd23427 | ricin B-type lectin domain, beta-trefoil fold, found in doublecortin domain-containing protein ... |
1423-1486 | 1.84e-05 | |||
ricin B-type lectin domain, beta-trefoil fold, found in doublecortin domain-containing protein 1 (DCDC1) and similar proteins; DCDC1, also called doublecortin domain-containing 5 protein (DCDC5), is a microtubule-binding protein which plays an important role in mediating dynein-dependent transport of RAB8A-positive vesicles to the midbody during cytokinesis. In addition to doublecortin-like domains, DCDC1 may also contain a ricin B-type lectin domain in the middle region. The ricin B-type lectin domain shows a beta-trefoil fold, which is characterized by 12 beta strands folded into three similar trefoil subdomains (alpha, beta, and gamma) associated to give an overall structure with pseudo-3-fold symmetry. Each subdomain may harbor a putative sugar-binding pocket. Pssm-ID: 467305 Cd Length: 146 Bit Score: 46.15 E-value: 1.84e-05
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Blast search parameters | ||||
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