NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2019481537|ref|XP_040263000|]
View 

C-terminal-binding protein 2 [Bufo bufo]

Protein Classification

C-terminal binding protein( domain architecture ID 10143094)

C-terminal binding protein (CtBP) functions as a transcriptional regulator by tethering chromatin remodeling proteins, such as histone deacetylases, histone methyl transferases, and histone demethylases, to DNA-bound transcription factors; CtBP may also have NAD-dependent dehydrogenase activity

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
CtBP_dh cd05299
C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related ...
29-346 1.85e-142

C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor; The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity.


:

Pssm-ID: 240624 [Multi-domain]  Cd Length: 312  Bit Score: 408.83  E-value: 1.85e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  29 PLVALLDGR--DCTVEMPILKDvATVAFCDAQS--TQEIHEKVlSEAVGALMYHTiSLSREDLEKFKALRIIIRIGSGYD 104
Cdd:cd05299     1 PKVVITDYDfpDLDIEREVLEE-AGVELVDAQSrtEDELIEAA-ADADALLVQYA-PVTAEVIEALPRLKVIVRYGVGVD 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 105 NIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAASVeqirevAGGAARIRGETLGIIGLG 184
Cdd:cd05299    78 NVDVAAATERGIPVCNVPDYCTEEVADHALALILALARKLPFLDRAVRAGGWDWTV------GGPIRRLRGLTLGLVGFG 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 185 RVGQAVALRAKAFGFAVIFYDPYLPDGVERsLGLQRMATLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVN 264
Cdd:cd05299   152 RIGRAVAKRAKAFGFRVIAYDPYVPDGVAA-LGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVN 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 265 TARGGLVDEKALAQALKDGRIRGAALDVHESEPFSFsQGPLKDAPNLICTPHTAWYSEHASIESREEAAKEIRRAITGPI 344
Cdd:cd05299   231 TARGGLVDEAALARALKSGRIAGAALDVLEEEPPPA-DSPLLSAPNVILTPHAAWYSEESLAELRRKAAEEVVRVLRGEP 309

                  ..
gi 2019481537 345 PD 346
Cdd:cd05299   310 PR 311
 
Name Accession Description Interval E-value
CtBP_dh cd05299
C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related ...
29-346 1.85e-142

C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor; The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity.


Pssm-ID: 240624 [Multi-domain]  Cd Length: 312  Bit Score: 408.83  E-value: 1.85e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  29 PLVALLDGR--DCTVEMPILKDvATVAFCDAQS--TQEIHEKVlSEAVGALMYHTiSLSREDLEKFKALRIIIRIGSGYD 104
Cdd:cd05299     1 PKVVITDYDfpDLDIEREVLEE-AGVELVDAQSrtEDELIEAA-ADADALLVQYA-PVTAEVIEALPRLKVIVRYGVGVD 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 105 NIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAASVeqirevAGGAARIRGETLGIIGLG 184
Cdd:cd05299    78 NVDVAAATERGIPVCNVPDYCTEEVADHALALILALARKLPFLDRAVRAGGWDWTV------GGPIRRLRGLTLGLVGFG 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 185 RVGQAVALRAKAFGFAVIFYDPYLPDGVERsLGLQRMATLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVN 264
Cdd:cd05299   152 RIGRAVAKRAKAFGFRVIAYDPYVPDGVAA-LGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVN 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 265 TARGGLVDEKALAQALKDGRIRGAALDVHESEPFSFsQGPLKDAPNLICTPHTAWYSEHASIESREEAAKEIRRAITGPI 344
Cdd:cd05299   231 TARGGLVDEAALARALKSGRIAGAALDVLEEEPPPA-DSPLLSAPNVILTPHAAWYSEESLAELRRKAAEEVVRVLRGEP 309

                  ..
gi 2019481537 345 PD 346
Cdd:cd05299   310 PR 311
LdhA COG1052
Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase [Energy production and conversion, ...
31-354 7.97e-96

Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase [Energy production and conversion, Coenzyme transport and metabolism, General function prediction only]; Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase is part of the Pathway/BioSystem: Pyridoxal phosphate biosynthesis


Pssm-ID: 440672 [Multi-domain]  Cd Length: 316  Bit Score: 290.45  E-value: 7.97e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  31 VALLDGRDCTVE-MPILKDVA-TVAFCDAQSTQEIHEKVLSEAVGALMYHTISLSREDLEKFKALRIIIRIGSGYDNIDI 108
Cdd:COG1052     3 ILVLDPRTLPDEvLERLEAEHfEVTVYEDETSPEELAERAAGADAVITNGKDPIDAEVLEALPGLKLIANRGVGYDNIDL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 109 KSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAASVEQIrevaggAARIRGETLGIIGLGRVGQ 188
Cdd:COG1052    83 AAAKERGITVTNTPGYLTEAVAEHAVALLLALARRIVEADRRVRAGDWSWSPGLL------GRDLSGKTLGIIGLGRIGQ 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 189 AVALRAKAFGFAVIFYDPYLPDGVERsLGLQRmATLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARG 268
Cdd:COG1052   157 AVARRAKGFGMKVLYYDRSPKPEVAE-LGAEY-VSLDELLAESDIVSLHCPLTPETRHLINAEELALMKPGAILINTARG 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 269 GLVDEKALAQALKDGRIRGAALDVHESEPFSFSQgPLKDAPNLICTPHTAWYSEHASIESREEAAKEIRRAITGpipDAL 348
Cdd:COG1052   235 GLVDEAALIEALKSGRIAGAGLDVFEEEPPPPDH-PLLSLPNVVLTPHIASATEEAREAMAELALDNLLAFLAG---EPP 310

                  ....*.
gi 2019481537 349 KNCVNK 354
Cdd:COG1052   311 PNPVNP 316
2-Hacid_dh pfam00389
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; This family represents the ...
31-353 2.28e-79

D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain.


Pssm-ID: 425656 [Multi-domain]  Cd Length: 311  Bit Score: 247.97  E-value: 2.28e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  31 VALLDGRdCTVEMPILKDvATVAFCDAQSTQEIHEKVlsEAVGALMYHTIS-LSREDLEKFKALRIIIRIGSGYDNIDIK 109
Cdd:pfam00389   1 VLILDPL-SPEALELLKE-GEVEVHDELLTEELLEKA--KDADALIVRSRTkVTAEVLEAAPKLKVIGRAGVGVDNVDLD 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 110 SAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAASVEQIREVAGGaarirgeTLGIIGLGRVGQA 189
Cdd:pfam00389  77 AATERGILVTNAPGYNTESVAELTIGLILALARRIPEADASVREGKWKKSGLIGLELYGK-------TLGVIGGGGIGGG 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 190 VALRAKAFGFAVIFYDPYLPDGVERSLGLQRMAT---LQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTA 266
Cdd:pfam00389 150 VAAIAKAFGMGVVAYDPYPNPERAEAGGVEVLSLlllLLDLPESDDVLTVNPLTTMKTGVIIINEARGMLKDAVAIINAA 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 267 RGGLVDEKALAQALKDGRIRGAALDVHESEPFSFSqgPLKDAPNLICTPHTAWYSEHASIESREEAAKEIRRAITGPIPd 346
Cdd:pfam00389 230 GGGVIDEAALDALLEEGIAAAADLDVEEEPPPVDS--PLLDLPNVILTPHIGGATEEAQERIAEEAAENILAFLDGGPP- 306

                  ....*..
gi 2019481537 347 alKNCVN 353
Cdd:pfam00389 307 --ANAVN 311
PGDH TIGR01327
D-3-phosphoglycerate dehydrogenase; This model represents a long form of D-3-phosphoglycerate ...
82-348 1.11e-67

D-3-phosphoglycerate dehydrogenase; This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. [Amino acid biosynthesis, Serine family]


Pssm-ID: 273556 [Multi-domain]  Cd Length: 525  Bit Score: 224.12  E-value: 1.11e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  82 LSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREG--NRAAS 159
Cdd:TIGR01327  52 VTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGewDRKAF 131
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 160 VeqirevaggAARIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYLPDGVERSLGLQRMATLQDLLMHSDCITLHCS 239
Cdd:TIGR01327 132 M---------GTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTP 202
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 240 LNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSFSqgPLKDAPNLICTPHTAW 319
Cdd:TIGR01327 203 LTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDN--PLFDLDNVIATPHLGA 280
                         250       260       270
                  ....*....|....*....|....*....|
gi 2019481537 320 YSEHASIESREEAAKEIRRA-ITGPIPDAL 348
Cdd:TIGR01327 281 STREAQENVATQVAEQVLDAlKGLPVPNAV 310
PRK08410 PRK08410
D-2-hydroxyacid dehydrogenase;
31-342 3.18e-57

D-2-hydroxyacid dehydrogenase;


Pssm-ID: 181414 [Multi-domain]  Cd Length: 311  Bit Score: 190.58  E-value: 3.18e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  31 VALLDGR---DCTVEmpILKDVATVAFCDAQSTQEIHEKVLSEAVgaLMYHTISLSREDLEKFKALRIIIRIGSGYDNID 107
Cdd:PRK08410    3 IVILDAKtlgDKDLS--VFEEFGDFQIYPTTSPEEVIERIKDANI--IITNKVVIDKEVLSQLPNLKLICITATGTNNVD 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 108 IKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAASvEQIREVAGGAARIRGETLGIIGLGRVG 187
Cdd:PRK08410   79 IEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSES-PIFTHISRPLGEIKGKKWGIIGLGTIG 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 188 QAVALRAKAFGFAVIFYDPylpDGVERSLGLQRMaTLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTAR 267
Cdd:PRK08410  158 KRVAKIAQAFGAKVVYYST---SGKNKNEEYERV-SLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGR 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 268 GGLVDEKALAQALKDGRIrGAALDVHESEPFSfSQGPL---KDAPNLICTPHTAWysehASIESR----EEAAKEIRRAI 340
Cdd:PRK08410  234 GGIVNEKDLAKALDEKDI-YAGLDVLEKEPME-KNHPLlsiKNKEKLLITPHIAW----ASKEARktliEKVKENIKDFL 307

                  ..
gi 2019481537 341 TG 342
Cdd:PRK08410  308 EG 309
 
Name Accession Description Interval E-value
CtBP_dh cd05299
C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related ...
29-346 1.85e-142

C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor; The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity.


Pssm-ID: 240624 [Multi-domain]  Cd Length: 312  Bit Score: 408.83  E-value: 1.85e-142
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  29 PLVALLDGR--DCTVEMPILKDvATVAFCDAQS--TQEIHEKVlSEAVGALMYHTiSLSREDLEKFKALRIIIRIGSGYD 104
Cdd:cd05299     1 PKVVITDYDfpDLDIEREVLEE-AGVELVDAQSrtEDELIEAA-ADADALLVQYA-PVTAEVIEALPRLKVIVRYGVGVD 77
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 105 NIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAASVeqirevAGGAARIRGETLGIIGLG 184
Cdd:cd05299    78 NVDVAAATERGIPVCNVPDYCTEEVADHALALILALARKLPFLDRAVRAGGWDWTV------GGPIRRLRGLTLGLVGFG 151
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 185 RVGQAVALRAKAFGFAVIFYDPYLPDGVERsLGLQRMATLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVN 264
Cdd:cd05299   152 RIGRAVAKRAKAFGFRVIAYDPYVPDGVAA-LGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVN 230
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 265 TARGGLVDEKALAQALKDGRIRGAALDVHESEPFSFsQGPLKDAPNLICTPHTAWYSEHASIESREEAAKEIRRAITGPI 344
Cdd:cd05299   231 TARGGLVDEAALARALKSGRIAGAALDVLEEEPPPA-DSPLLSAPNVILTPHAAWYSEESLAELRRKAAEEVVRVLRGEP 309

                  ..
gi 2019481537 345 PD 346
Cdd:cd05299   310 PR 311
formate_dh_like cd05198
Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase ...
31-338 7.86e-102

Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family; Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240622 [Multi-domain]  Cd Length: 302  Bit Score: 305.32  E-value: 7.86e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  31 VALLDGRDCTVEMPILKD-VATVAFCDAQSTQEIhEKVLSEAVGALMYHTISLSREDLEKFKALRIIIRIGSGYDNIDIK 109
Cdd:cd05198     2 VLVLEPLFPPEALEALEAtGFEVIVADDLLADEL-EALLADADALIVSSTTPVTAEVLAKAPKLKFIQVAGAGVDNIDLD 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 110 SAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAASVEQIrevaggAARIRGETLGIIGLGRVGQA 189
Cdd:cd05198    81 AAKKRGITVTNVPGANAEAVAEHALGLLLALLRRLPRADAAVRRGWGWLWAGFP------GYELEGKTVGIVGLGRIGQR 154
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 190 VALRAKAFGFAVIFYDPYLPDGVERSLGLQRmATLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGG 269
Cdd:cd05198   155 VAKRLQAFGMKVLYYDRTRKPEPEEDLGFRV-VSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGG 233
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2019481537 270 LVDEKALAQALKDGRIRGAALDVHESEPFSFSqGPLKDAPNLICTPHTAWYSEHASIESREEAAKEIRR 338
Cdd:cd05198   234 LVDEDALLRALKSGKIAGAALDVFEPEPLPAD-HPLLELPNVILTPHIAGYTEEARERMAEIAVENLER 301
LdhA COG1052
Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase [Energy production and conversion, ...
31-354 7.97e-96

Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase [Energy production and conversion, Coenzyme transport and metabolism, General function prediction only]; Lactate dehydrogenase or related 2-hydroxyacid dehydrogenase is part of the Pathway/BioSystem: Pyridoxal phosphate biosynthesis


Pssm-ID: 440672 [Multi-domain]  Cd Length: 316  Bit Score: 290.45  E-value: 7.97e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  31 VALLDGRDCTVE-MPILKDVA-TVAFCDAQSTQEIHEKVLSEAVGALMYHTISLSREDLEKFKALRIIIRIGSGYDNIDI 108
Cdd:COG1052     3 ILVLDPRTLPDEvLERLEAEHfEVTVYEDETSPEELAERAAGADAVITNGKDPIDAEVLEALPGLKLIANRGVGYDNIDL 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 109 KSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAASVEQIrevaggAARIRGETLGIIGLGRVGQ 188
Cdd:COG1052    83 AAAKERGITVTNTPGYLTEAVAEHAVALLLALARRIVEADRRVRAGDWSWSPGLL------GRDLSGKTLGIIGLGRIGQ 156
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 189 AVALRAKAFGFAVIFYDPYLPDGVERsLGLQRmATLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARG 268
Cdd:COG1052   157 AVARRAKGFGMKVLYYDRSPKPEVAE-LGAEY-VSLDELLAESDIVSLHCPLTPETRHLINAEELALMKPGAILINTARG 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 269 GLVDEKALAQALKDGRIRGAALDVHESEPFSFSQgPLKDAPNLICTPHTAWYSEHASIESREEAAKEIRRAITGpipDAL 348
Cdd:COG1052   235 GLVDEAALIEALKSGRIAGAGLDVFEEEPPPPDH-PLLSLPNVVLTPHIASATEEAREAMAELALDNLLAFLAG---EPP 310

                  ....*.
gi 2019481537 349 KNCVNK 354
Cdd:COG1052   311 PNPVNP 316
SerA COG0111
Phosphoglycerate dehydrogenase or related dehydrogenase [Coenzyme transport and metabolism]; ...
50-353 1.42e-92

Phosphoglycerate dehydrogenase or related dehydrogenase [Coenzyme transport and metabolism]; Phosphoglycerate dehydrogenase or related dehydrogenase is part of the Pathway/BioSystem: Serine biosynthesis


Pssm-ID: 439881 [Multi-domain]  Cd Length: 314  Bit Score: 282.08  E-value: 1.42e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  50 ATVAFCDAQSTQEIHEKvLSEAVGALMYHTISLSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEET 129
Cdd:COG0111    23 IEVVYAPGLDEEELAEA-LADADALIVRSRTKVTAELLAAAPNLKLIGRAGAGVDNIDLAAATERGIPVTNAPGANARAV 101
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 130 ADSTLCHILNLYRRVTWLHQAMREGNRAASVEQIREvaggaarIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYLP 209
Cdd:COG0111   102 AEYALALLLALARRLPEADRAQRAGRWDRSAFRGRE-------LRGKTVGIVGLGRIGRAVARRLRAFGMRVLAYDPSPK 174
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 210 DGVERSLGLQRMATLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAA 289
Cdd:COG0111   175 PEEAADLGVGLVDSLDELLAEADVVSLHLPLTPETRGLIGAEELAAMKPGAILINTARGGVVDEDALLAALDSGRLAGAA 254
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2019481537 290 LDVHESEPFSFSQgPLKDAPNLICTPHTAWYSEHASIESREEAAKEIRRAITGpipDALKNCVN 353
Cdd:COG0111   255 LDVFEPEPLPADS-PLWDLPNVILTPHIAGSTEEAQERAARQVAENIRRFLAG---EPLRNLVN 314
PGDH_like_2 cd12172
Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains; ...
59-339 3.19e-86

Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.


Pssm-ID: 240649 [Multi-domain]  Cd Length: 306  Bit Score: 265.51  E-value: 3.19e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  59 STQEIHEKvLSEAVGALMyHTISLSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVP---SSSVeetADSTLC 135
Cdd:cd12172    37 TEEELIEL-LKDADGVIA-GLDPITEEVLAAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPganSNSV---AELTIG 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 136 HILNLYRRVTWLHQAMREG--NRAASVEqirevaggaarIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYLPDGVE 213
Cdd:cd12172   112 LMLALARQIPQADREVRAGgwDRPVGTE-----------LYGKTLGIIGLGRIGKAVARRLSGFGMKVLAYDPYPDEEFA 180
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 214 RSLGLQrMATLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVH 293
Cdd:cd12172   181 KEHGVE-FVSLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILINTARGGLVDEEALYEALKSGRIAGAALDVF 259
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*.
gi 2019481537 294 ESEPFSfSQGPLKDAPNLICTPHTAWYSEHASIESREEAAKEIRRA 339
Cdd:cd12172   260 EEEPPP-ADSPLLELPNVILTPHIGASTKEAVLRMGTMAAQNVIDV 304
PGDH_4 cd12173
Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate ...
83-342 1.89e-85

Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.


Pssm-ID: 240650 [Multi-domain]  Cd Length: 304  Bit Score: 263.12  E-value: 1.89e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  83 SREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAASVEQ 162
Cdd:cd12173    53 TAEVIEAAPRLKVIGRAGVGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALARNIPQADASLRAGKWDRKKFM 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 163 IREvaggaarIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYLPDGVERSLGlQRMATLQDLLMHSDCITLHCSLNE 242
Cdd:cd12173   133 GVE-------LRGKTLGIVGLGRIGREVARRARAFGMKVLAYDPYISAERAAAGG-VELVSLDELLAEADFISLHTPLTP 204
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 243 HNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSfSQGPLKDAPNLICTPHTAWYSE 322
Cdd:cd12173   205 ETRGLINAEELAKMKPGAILINTARGGIVDEAALADALKSGKIAGAALDVFEQEPPP-ADSPLLGLPNVILTPHLGASTE 283
                         250       260
                  ....*....|....*....|
gi 2019481537 323 HASIESREEAAKEIRRAITG 342
Cdd:cd12173   284 EAQERVAVDAAEQVLAVLAG 303
2-Hacid_dh pfam00389
D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; This family represents the ...
31-353 2.28e-79

D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain.


Pssm-ID: 425656 [Multi-domain]  Cd Length: 311  Bit Score: 247.97  E-value: 2.28e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  31 VALLDGRdCTVEMPILKDvATVAFCDAQSTQEIHEKVlsEAVGALMYHTIS-LSREDLEKFKALRIIIRIGSGYDNIDIK 109
Cdd:pfam00389   1 VLILDPL-SPEALELLKE-GEVEVHDELLTEELLEKA--KDADALIVRSRTkVTAEVLEAAPKLKVIGRAGVGVDNVDLD 76
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 110 SAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAASVEQIREVAGGaarirgeTLGIIGLGRVGQA 189
Cdd:pfam00389  77 AATERGILVTNAPGYNTESVAELTIGLILALARRIPEADASVREGKWKKSGLIGLELYGK-------TLGVIGGGGIGGG 149
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 190 VALRAKAFGFAVIFYDPYLPDGVERSLGLQRMAT---LQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTA 266
Cdd:pfam00389 150 VAAIAKAFGMGVVAYDPYPNPERAEAGGVEVLSLlllLLDLPESDDVLTVNPLTTMKTGVIIINEARGMLKDAVAIINAA 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 267 RGGLVDEKALAQALKDGRIRGAALDVHESEPFSFSqgPLKDAPNLICTPHTAWYSEHASIESREEAAKEIRRAITGPIPd 346
Cdd:pfam00389 230 GGGVIDEAALDALLEEGIAAAADLDVEEEPPPVDS--PLLDLPNVILTPHIGGATEEAQERIAEEAAENILAFLDGGPP- 306

                  ....*..
gi 2019481537 347 alKNCVN 353
Cdd:pfam00389 307 --ANAVN 311
2-Hacid_dh_13 cd12178
Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; ...
84-353 7.96e-77

Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240655 [Multi-domain]  Cd Length: 317  Bit Score: 241.76  E-value: 7.96e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  84 REDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREG---NRAASV 160
Cdd:cd12178    57 KEIIDAAKNLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALARRIAEGDRLMRRGgflGWAPLF 136
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 161 EQIREVAGgaarirgETLGIIGLGRVGQAVALRAKAFGFAVIFYDPY-LPDGVERSLGLqRMATLQDLLMHSDCITLHCS 239
Cdd:cd12178   137 FLGHELAG-------KTLGIIGMGRIGQAVARRAKAFGMKILYYNRHrLSEETEKELGA-TYVDLDELLKESDFVSLHAP 208
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 240 LNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPfSFSQGpLKDAPNLICTPHTAw 319
Cdd:cd12178   209 YTPETHHLIDAAAFKLMKPTAYLINAARGPLVDEKALVDALKTGEIAGAALDVFEFEP-EVSPE-LKKLDNVILTPHIG- 285
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 2019481537 320 yseHASIESR----EEAAKEIRRAITGPIPdalKNCVN 353
Cdd:cd12178   286 ---NATVEARdamaKEAADNIISFLEGKRP---KNIVN 317
2-Hacid_dh_4 cd12162
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
82-330 5.71e-74

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240639 [Multi-domain]  Cd Length: 307  Bit Score: 233.88  E-value: 5.71e-74
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  82 LSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAASVE 161
Cdd:cd12162    55 LDAEVLAQLPNLKLIGVLATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHNDVVKAGEWQKSPD 134
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 162 Q------IREVAGgaarirgETLGIIGLGRVGQAVALRAKAFGFAVIFYDPY--LPDGVERslglqrmATLQDLLMHSDC 233
Cdd:cd12162   135 FcfwdypIIELAG-------KTLGIIGYGNIGQAVARIARAFGMKVLFAERKgaPPLREGY-------VSLDELLAQSDV 200
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 234 ITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPfsfsqgP------LKD 307
Cdd:cd12162   201 ISLHCPLTPETRNLINAEELAKMKPGAILINTARGGLVDEQALADALNSGKIAGAGLDVLSQEP------PradnplLKA 274
                         250       260
                  ....*....|....*....|...
gi 2019481537 308 APNLICTPHTAWysehASIESRE 330
Cdd:cd12162   275 APNLIITPHIAW----ASREARQ 293
2-Hacid_dh_11 cd12175
Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; ...
79-345 2.23e-73

Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240652 [Multi-domain]  Cd Length: 311  Bit Score: 232.46  E-value: 2.23e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  79 TISLSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNraa 158
Cdd:cd12175    52 RKVIDAELLAAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLALLRRLPEADRELRAGR--- 128
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 159 sveQIREVAGGAARIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYLPDGVERSLGLQRMATLQDLLMHSDCITLHC 238
Cdd:cd12175   129 ---WGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGVEVIYYDRFRDPEAEEKDLGVRYVELDELLAESDVVSLHV 205
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 239 SLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSFSQgPLKDAPNLICTPHTA 318
Cdd:cd12175   206 PLTPETRHLIGAEELAAMKPGAILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQEPLPPDD-PLLRLDNVILTPHIA 284
                         250       260
                  ....*....|....*....|....*..
gi 2019481537 319 WYSEHASIESREEAAKEIRRAITGPIP 345
Cdd:cd12175   285 GVTDESYQRMAAIVAENIARLLRGEPP 311
LDH_like cd01619
D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; D-Lactate ...
31-342 1.69e-71

D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240620 [Multi-domain]  Cd Length: 323  Bit Score: 227.95  E-value: 1.69e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  31 VALLDGRDctVEMPILKDVA-----TVAFCDAQSTQEIHEKVLSEAVGALMYHTISLSREDLEKFKALRIIIRIGSGYDN 105
Cdd:cd01619     3 VLIYDYRD--DELEIEKEILkaggvDVEIVTYLLNDDETAELAKGADAILTAFTDKIDAELLDKAPGLKFISLRATGYDN 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 106 IDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAASVEQIREvaggaarIRGETLGIIGLGR 185
Cdd:cd01619    81 IDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLRNRKYIDERDKNQDLQDAGVIGRE-------LEDQTVGVVGTGK 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 186 VGQAVALRAKAFGFAVIFYDPYLPDGVERSLGLQrmATLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNT 265
Cdd:cd01619   154 IGRAVAQRAKGFGMKVIAYDPFRNPELEDKGVKY--VSLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIIINT 231
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 266 ARGGLVDEKALAQALKDGRIRGAALDVHESE-----------PFSFSQGP-LKDAPNLICTPHTAWYSEHASIESREEAA 333
Cdd:cd01619   232 ARGSLVDTEALIEALDSGKIFGAGLDVLEDEtpdllkdlegeIFKDALNAlLGRRPNVIITPHTAFYTDDALKNMVEISC 311

                  ....*....
gi 2019481537 334 KEIRRAITG 342
Cdd:cd01619   312 ENIVDFLEG 320
Mand_dh_like cd12168
D-Mandelate Dehydrogenase-like dehydrogenases; D-Mandelate dehydrogenase (D-ManDH), identified ...
93-342 8.87e-71

D-Mandelate Dehydrogenase-like dehydrogenases; D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240645 [Multi-domain]  Cd Length: 321  Bit Score: 226.27  E-value: 8.87e-71
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  93 LRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAASVEqirevAGGAAR 172
Cdd:cd12168    77 LKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATADTALFLILGALRNFSRAERSARAGKWRGFLD-----LTLAHD 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 173 IRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPY-LPDGVERSLGLqRMATLQDLLMHSDCITLHCSLNEHNHHLINDF 251
Cdd:cd12168   152 PRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNRSrLPEELEKALAT-YYVSLDELLAQSDVVSLNCPLTAATRHLINKK 230
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 252 TIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFsFSQGpLKDAPNLICTPHTAWYSEHASIESREE 331
Cdd:cd12168   231 EFAKMKDGVIIVNTARGAVIDEDALVDALESGKVASAGLDVFENEPE-VNPG-LLKMPNVTLLPHMGTLTVETQEKMEEL 308
                         250
                  ....*....|.
gi 2019481537 332 AAKEIRRAITG 342
Cdd:cd12168   309 VLENIEAFLET 319
GDH cd05301
D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH); D-glycerate dehydrogenase (GDH, ...
43-342 4.00e-70

D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH); D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240626 [Multi-domain]  Cd Length: 309  Bit Score: 224.20  E-value: 4.00e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  43 MPILKDVATVAFCD---AQSTQEIHEKVlSEAVGALMYHTISLSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVC 119
Cdd:cd05301    14 LALLREGFEVEVWDedrPLPREELLEAA-KGADGLLCTLTDKIDAELLDAAPPLKVIANYSVGYDHIDVDAAKARGIPVT 92
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 120 NVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAAsveqIREVAGGAARIRGETLGIIGLGRVGQAVALRAKAFGF 199
Cdd:cd05301    93 NTPDVLTDATADLAFALLLAAARRVVEGDRFVRAGEWKG----WSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAKGFGM 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 200 AVIFYDPYLPDGVERSLGLQRmATLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQA 279
Cdd:cd05301   169 KILYHNRSRKPEAEEELGARY-VSLDELLAESDFVSLHCPLTPETRHLINAERLALMKPTAILINTARGGVVDEDALVEA 247
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2019481537 280 LKDGRIRGAALDVHESEPFSFSQgPLKDAPNLICTPHTAwySehASIESREE----AAKEIRRAITG 342
Cdd:cd05301   248 LKSGKIAGAGLDVFEPEPLPADH-PLLTLPNVVLLPHIG--S--ATVETRTAmaelAADNLLAVLAG 309
2-Hacid_dh_C pfam02826
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; This domain is inserted ...
134-318 1.57e-68

D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.


Pssm-ID: 427007 [Multi-domain]  Cd Length: 178  Bit Score: 215.44  E-value: 1.57e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 134 LCHILNLYRRVTWLHQAMREGNRAasveqiREVAGGAARIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYLPDGVE 213
Cdd:pfam02826   1 LALLLALARRIPEADRQVRAGRWA------SPDALLGRELSGKTVGIIGLGRIGRAVAKRLKAFGMKVIAYDRYPKPEEE 74
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 214 RSLGLQRMATLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVH 293
Cdd:pfam02826  75 EEELGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVF 154
                         170       180
                  ....*....|....*....|....*
gi 2019481537 294 ESEPFSFSQgPLKDAPNLICTPHTA 318
Cdd:pfam02826 155 EPEPLPADH-PLLDLPNVILTPHIA 178
PGDH TIGR01327
D-3-phosphoglycerate dehydrogenase; This model represents a long form of D-3-phosphoglycerate ...
82-348 1.11e-67

D-3-phosphoglycerate dehydrogenase; This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. [Amino acid biosynthesis, Serine family]


Pssm-ID: 273556 [Multi-domain]  Cd Length: 525  Bit Score: 224.12  E-value: 1.11e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  82 LSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREG--NRAAS 159
Cdd:TIGR01327  52 VTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGewDRKAF 131
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 160 VeqirevaggAARIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYLPDGVERSLGLQRMATLQDLLMHSDCITLHCS 239
Cdd:TIGR01327 132 M---------GTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTP 202
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 240 LNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSFSqgPLKDAPNLICTPHTAW 319
Cdd:TIGR01327 203 LTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDN--PLFDLDNVIATPHLGA 280
                         250       260       270
                  ....*....|....*....|....*....|
gi 2019481537 320 YSEHASIESREEAAKEIRRA-ITGPIPDAL 348
Cdd:TIGR01327 281 STREAQENVATQVAEQVLDAlKGLPVPNAV 310
PGDH_2 cd05303
Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains; Phosphoglycerate ...
84-336 1.77e-67

Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains; Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.


Pssm-ID: 240628 [Multi-domain]  Cd Length: 301  Bit Score: 217.02  E-value: 1.77e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  84 REDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGN----RAAS 159
Cdd:cd05303    55 KEVIDAAKNLKIIARAGVGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRANREMKLGKwnkkKYKG 134
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 160 VEqirevaggaarIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYLPDGVERSLGLQRMaTLQDLLMHSDCITLHCS 239
Cdd:cd05303   135 IE-----------LRGKTLGIIGFGRIGREVAKIARALGMNVIAYDPYPKDEQAVELGVKTV-SLEELLKNSDFISLHVP 202
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 240 LNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSFSQgpLKDAPNLICTPHTAw 319
Cdd:cd05303   203 LTPETKHMINKKELELMKDGAIIINTSRGGVIDEEALLEALKSGKLAGAALDVFENEPPPGSK--LLELPNVSLTPHIG- 279
                         250
                  ....*....|....*..
gi 2019481537 320 yseHASIESREEAAKEI 336
Cdd:cd05303   280 ---ASTKEAQERIGEEL 293
2-Hacid_dh_10 cd12171
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
62-338 5.59e-64

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240648 [Multi-domain]  Cd Length: 310  Bit Score: 208.16  E-value: 5.59e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  62 EIHEKVLSEAVGA--LMYHTISLSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILN 139
Cdd:cd12171    35 EPEEELLEALKDAdiLITHFAPVTKKVIEAAPKLKLIGVCRGGPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLMLA 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 140 LYRRVTWLHQAMREGnraasveQIREVAGGAAR----IRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYLPDGVERS 215
Cdd:cd12171   115 ETRNIARAHAALKDG-------EWRKDYYNYDGygpeLRGKTVGIVGFGAIGRRVAKRLKAFGAEVLVYDPYVDPEKIEA 187
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 216 LGLqRMATLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHES 295
Cdd:cd12171   188 DGV-KKVSLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARAGLVDEDALIEALEEGKIGGAALDVFPE 266
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 2019481537 296 EPFSfSQGPLKDAPNLICTPHTAWYSEHASIESREEAAKEIRR 338
Cdd:cd12171   267 EPLP-ADHPLLKLDNVTLTPHIAGATRDVAERSPEIIAEELKR 308
2-Hacid_dh_12 cd12177
Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; ...
32-350 1.10e-62

Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240654 [Multi-domain]  Cd Length: 321  Bit Score: 205.25  E-value: 1.10e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  32 ALLDGRDCTVEMPILKDVATVAFCDAQSTqeIHEKVLSEAVGAlmYHTISLS------REDLEKFKALRIIIRIGSGYDN 105
Cdd:cd12177     7 SSSFGQYFPEHIQRLKKIGYVDRFEVPPD--ISGKALAEKLKG--YDIIIASvtpnfdKEFFEYNDGLKLIARHGIGYDN 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 106 IDIKSAAEMGIAVCNVPSS----SVEETAdstLCHILNLYRRVTWLHQAMREG---NRAASVEQirevaggaaRIRGETL 178
Cdd:cd12177    83 VDLKAATEHGVIVTRVPGAverdAVAEHA---VALILTVLRKINQASEAVKEGkwtERANFVGH---------ELSGKTV 150
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 179 GIIGLGRVGQAVA-LRAKAFGFAVIFYDPYLPDGVERSLGLQRMaTLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMR 257
Cdd:cd12177   151 GIIGYGNIGSRVAeILKEGFNAKVLAYDPYVSEEVIKKKGAKPV-SLEELLAESDIISLHAPLTEETYHMINEKAFSKMK 229
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 258 QGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSFSQgPLKDAPNLICTPHTAWYSEHASIESREEAAKEIR 337
Cdd:cd12177   230 KGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEPIKADH-PLLHYENVVITPHIGAYTYESLYGMGEKVVDDIE 308
                         330
                  ....*....|...
gi 2019481537 338 RAITGPIPDALKN 350
Cdd:cd12177   309 DFLAGKEPKGILN 321
PGDH_like_3 cd12174
Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains; ...
81-353 4.18e-62

Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.


Pssm-ID: 240651 [Multi-domain]  Cd Length: 305  Bit Score: 203.18  E-value: 4.18e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  81 SLSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVP---SSSVEETAdstLCHILNLYRRVTWLHQAMREGNRA 157
Cdd:cd12174    39 SDKLHDMDFAPSLKAIARAGAGVNNIDVDAASKRGIVVFNTPganANAVAELV---IAMMLALSRNIIQAIKWVTNGDGD 115
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 158 ASVEQIR-EVAGGAAR-IRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYLPdgVERSLGL----QRMATLQDLLMHS 231
Cdd:cd12174   116 DISKGVEkGKKQFVGTeLRGKTLGVIGLGNIGRLVANAALALGMKVIGYDPYLS--VEAAWKLsvevQRVTSLEELLATA 193
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 232 DCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEpfsfsqgPLKDAPNL 311
Cdd:cd12174   194 DYITLHVPLTDETRGLINAELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLGGYVTDFPEPA-------LLGHLPNV 266
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 2019481537 312 ICTPHTAWYSEHASIESREEAAKEIRRAI-TGPIPdalkNCVN 353
Cdd:cd12174   267 IATPHLGASTEEAEENCAVMAARQIMDFLeTGNIT----NSVN 305
LDH cd12186
D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding ...
59-324 1.08e-60

D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains; D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240662  Cd Length: 329  Bit Score: 200.07  E-value: 1.08e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  59 STQEIHEKVLSEAVGA---LMYHTISLSREDLEKFKAL---RIIIRIgSGYDNIDIKSAAEMGIAVCNVPSSSVEETADS 132
Cdd:cd12186    30 TTELLTPETVDLAKGYdgvVVQQTLPYDEEVYEKLAEYgikQIALRS-AGVDMIDLDLAKENGLKITNVPAYSPRAIAEF 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 133 TLCHILNLYRRVTWLHQAMREGN-RAASVEQIREvaggaarIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYlPDG 211
Cdd:cd12186   109 AVTQALNLLRNTPEIDRRVAKGDfRWAPGLIGRE-------IRDLTVGIIGTGRIGSAAAKIFKGFGAKVIAYDPY-PNP 180
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 212 VERSLGLQRMaTLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALD 291
Cdd:cd12186   181 ELEKFLLYYD-SLEDLLKQADIISLHVPLTKENHHLINAEAFAKMKDGAILVNAARGGLVDTKALIDALDSGKIAGAALD 259
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 2019481537 292 VHESE----PFSFSQGPLKDA--------PNLICTPHTAWYSEHA 324
Cdd:cd12186   260 TYENEtgyfNKDWSGKEIEDEvlkeliamPNVLITPHIAFYTDTA 304
LDH_like_1 cd12187
D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains; ...
82-342 5.72e-60

D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains; D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240663 [Multi-domain]  Cd Length: 329  Bit Score: 198.27  E-value: 5.72e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  82 LSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAASVE 161
Cdd:cd12187    53 LDAEVLEKLPRLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALSRKLREAIERTRRGDFSQAGL 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 162 QIREvaggaarIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYLPDGVERSLGLqRMATLQDLLMHSDCITLHCSLN 241
Cdd:cd12187   133 RGFE-------LAGKTLGVVGTGRIGRRVARIARGFGMKVLAYDVVPDEELAERLGF-RYVSLEELLQESDIISLHVPYT 204
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 242 EHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPF----------SFSQGPLKDA--- 308
Cdd:cd12187   205 PQTHHLINRENFALMKPGAVLINTARGAVVDTEALVRALKEGKLAGAGLDVLEQEEVlreeaelfreDVSPEDLKKLlad 284
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 2019481537 309 ------PNLICTPHTAWYSEHASIESREEAAKEIRRAITG 342
Cdd:cd12187   285 hallrkPNVIITPHVAYNTKEALERILDTTVENIKAFAAG 324
PRK08410 PRK08410
D-2-hydroxyacid dehydrogenase;
31-342 3.18e-57

D-2-hydroxyacid dehydrogenase;


Pssm-ID: 181414 [Multi-domain]  Cd Length: 311  Bit Score: 190.58  E-value: 3.18e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  31 VALLDGR---DCTVEmpILKDVATVAFCDAQSTQEIHEKVLSEAVgaLMYHTISLSREDLEKFKALRIIIRIGSGYDNID 107
Cdd:PRK08410    3 IVILDAKtlgDKDLS--VFEEFGDFQIYPTTSPEEVIERIKDANI--IITNKVVIDKEVLSQLPNLKLICITATGTNNVD 78
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 108 IKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAASvEQIREVAGGAARIRGETLGIIGLGRVG 187
Cdd:PRK08410   79 IEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSES-PIFTHISRPLGEIKGKKWGIIGLGTIG 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 188 QAVALRAKAFGFAVIFYDPylpDGVERSLGLQRMaTLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTAR 267
Cdd:PRK08410  158 KRVAKIAQAFGAKVVYYST---SGKNKNEEYERV-SLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGR 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 268 GGLVDEKALAQALKDGRIrGAALDVHESEPFSfSQGPL---KDAPNLICTPHTAWysehASIESR----EEAAKEIRRAI 340
Cdd:PRK08410  234 GGIVNEKDLAKALDEKDI-YAGLDVLEKEPME-KNHPLlsiKNKEKLLITPHIAW----ASKEARktliEKVKENIKDFL 307

                  ..
gi 2019481537 341 TG 342
Cdd:PRK08410  308 EG 309
PRK06487 PRK06487
2-hydroxyacid dehydrogenase;
56-330 6.30e-56

2-hydroxyacid dehydrogenase;


Pssm-ID: 180588 [Multi-domain]  Cd Length: 317  Bit Score: 187.60  E-value: 6.30e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  56 DAQSTQEIHEKvLSEAVGALMyHTISLSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLC 135
Cdd:PRK06487   32 DATTPEQVAER-LRGAQVAIS-NKVALDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLA 109
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 136 HILNLYRRVTWLHQAMREGNRAASVE------QIREVAGgaarirgETLGIIGLGRVGQAVALRAKAFGFAVIFYDpyLP 209
Cdd:PRK06487  110 LLLALATRLPDYQQAVAAGRWQQSSQfclldfPIVELEG-------KTLGLLGHGELGGAVARLAEAFGMRVLIGQ--LP 180
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 210 DGVERslgLQRMAtLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAA 289
Cdd:PRK06487  181 GRPAR---PDRLP-LDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAA 256
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 2019481537 290 LDVHESEPfSFSQGPL--KDAPNLICTPHTAWysehASIESRE 330
Cdd:PRK06487  257 TDVLSVEP-PVNGNPLlaPDIPRLIVTPHSAW----GSREARQ 294
GDH_like_1 cd12161
Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy ...
43-333 8.66e-56

Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family; This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240638 [Multi-domain]  Cd Length: 315  Bit Score: 187.04  E-value: 8.66e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  43 MPILKDVATVAFCDAQSTQEihEKVLSEAVGA--LMYHTISLSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCN 120
Cdd:cd12161    20 APLEEQGHEFVYYDTKTTDT--AELIERSKDAdiVMIANMPLPGEVIEACKNLKMISVAFTGVDHVDLEACKERGITVSN 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 121 VPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAASVEQiREvaggaarIRGETLGIIGLGRVGQAVALRAKAFGFA 200
Cdd:cd12161    98 AAGYSTEAVAELTIGLAIDLLRNIVPCDAAVRAGGTKAGLIG-RE-------LAGKTVGIVGTGAIGLRVARLFKAFGCK 169
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 201 VIFYDPYLPDGVErSLGLQRMaTLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQAL 280
Cdd:cd12161   170 VLAYSRSEKEEAK-ALGIEYV-SLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARGPVVDNEALADAL 247
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2019481537 281 KDGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHTAWYSEHAsIESREEAA 333
Cdd:cd12161   248 NEGKIAGAGIDVFDMEPPLPADYPLLHAPNTILTPHVAFATEEA-MEKRAEIV 299
PGDH_like_1 cd12169
Putative D-3-Phosphoglycerate Dehydrogenases; Phosphoglycerate dehydrogenases (PGDHs) catalyze ...
44-342 1.10e-55

Putative D-3-Phosphoglycerate Dehydrogenases; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric.


Pssm-ID: 240646 [Multi-domain]  Cd Length: 308  Bit Score: 186.56  E-value: 1.10e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  44 PILKDVATV-AFCD-AQSTQEIHEKVLS-EAVGALMYHTIsLSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCN 120
Cdd:cd12169    19 SKLDDRAEVtVFNDhLLDEDALAERLAPfDAIVLMRERTP-FPAALLERLPNLKLLVTTGMRNASIDLAAAKERGIVVCG 97
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 121 VPSSSvEETADSTLCHILNLYRRVTWLHQAMREGNRAASVeqirevaggAARIRGETLGIIGLGRVGQAVALRAKAFGFA 200
Cdd:cd12169    98 TGGGP-TATAELTWALILALARNLPEEDAALRAGGWQTTL---------GTGLAGKTLGIVGLGRIGARVARIGQAFGMR 167
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 201 VIFYDPYLPDGVERSLGLQRMATLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQAL 280
Cdd:cd12169   168 VIAWSSNLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLVNTSRGPLVDEGALLAAL 247
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2019481537 281 KDGRIRGAALDVHESEPFSFSQgPLKDAPNLICTPHTAWYSEHASIESREEAAKEIRRAITG 342
Cdd:cd12169   248 RAGRIAGAALDVFDVEPLPADH-PLRGLPNVLLTPHIGYVTEEAYEGFYGQAVENIAAWLAG 308
PRK13243 PRK13243
glyoxylate reductase; Reviewed
61-355 1.42e-55

glyoxylate reductase; Reviewed


Pssm-ID: 183914  Cd Length: 333  Bit Score: 186.92  E-value: 1.42e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  61 QEIHEKVLSEAV---GALMyhTISLSREDLEKFKA---LRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTL 134
Cdd:PRK13243   32 REIPREVLLEKVrdvDALV--TMLSERIDCEVFEAaprLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAW 109
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 135 CHILNLYRRVTWLHQAMREGN--RAASVEQIREVAGgaARIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYLPDGV 212
Cdd:PRK13243  110 ALLLATARRLVEADHFVRSGEwkRRGVAWHPLMFLG--YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA 187
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 213 ERSLGLQRMaTLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDV 292
Cdd:PRK13243  188 EKELGAEYR-PLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDV 266
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2019481537 293 HESEPfsFSQGPLKDAPNLICTPHTAwyseHASIESREEAAKEIRRAIT----GPIPDALkncVNKE 355
Cdd:PRK13243  267 FEEEP--YYNEELFSLKNVVLAPHIG----SATFEAREGMAELVAENLIafkrGEVPPTL---VNRE 324
LDH_like_2 cd12183
D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; D-Lactate ...
82-324 1.69e-55

D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240659  Cd Length: 328  Bit Score: 186.50  E-value: 1.69e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  82 LSREDLEKFKALR---IIIRIgSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRvtwLHQA---MREGN 155
Cdd:cd12183    56 LDAPVLEKLAELGvklIALRC-AGFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLALNRK---IHRAynrVREGN 131
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 156 RAasveqIREVAGGAarIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYlPDGVERSLGLqRMATLQDLLMHSDCIT 235
Cdd:cd12183   132 FS-----LDGLLGFD--LHGKTVGVIGTGKIGQAFARILKGFGCRVLAYDPY-PNPELAKLGV-EYVDLDELLAESDIIS 202
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 236 LHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSF----SQGPLKDA--- 308
Cdd:cd12183   203 LHCPLTPETHHLINAETIAKMKDGVMLINTSRGGLIDTKALIEALKSGKIGGLGLDVYEEEAGLFfedhSDEIIQDDvla 282
                         250       260
                  ....*....|....*....|.
gi 2019481537 309 -----PNLICTPHTAWYSEHA 324
Cdd:cd12183   283 rllsfPNVLITGHQAFFTKEA 303
HGDH_LDH_like cd12185
Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, ...
78-324 2.15e-52

Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains; This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240661  Cd Length: 322  Bit Score: 178.17  E-value: 2.15e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  78 HTISLSREDLEKFKAL-------RIIirigsGYDNIDIKSAAEMGIAVCNVPSS--SVeetADSTLCHILNLYRRVTWLH 148
Cdd:cd12185    52 GKSKISAELLEKLKEAgvkyistRSI-----GYDHIDLDAAKELGIKVSNVTYSpnSV---ADYTVMLMLMALRKYKQIM 123
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 149 QAMREGNRAASVEQIREvaggaarIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPY----LPDGVErslglqrMATL 224
Cdd:cd12185   124 KRAEVNDYSLGGLQGRE-------LRNLTVGVIGTGRIGQAVIKNLSGFGCKILAYDPYpneeVKKYAE-------YVDL 189
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 225 QDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSFSQ-- 302
Cdd:cd12185   190 DTLYKESDIITLHTPLTEETYHLINKESIAKMKDGVIIINTARGELIDTEALIEGLESGKIGGAALDVIEGEDGIYYNdr 269
                         250       260       270
                  ....*....|....*....|....*....|..
gi 2019481537 303 ----------GPLKDAPNLICTPHTAWYSEHA 324
Cdd:cd12185   270 kgdilsnrelAILRSFPNVILTPHMAFYTDQA 301
FDH cd05302
NAD-dependent Formate Dehydrogenase (FDH); NAD-dependent formate dehydrogenase (FDH) catalyzes ...
77-317 1.97e-48

NAD-dependent Formate Dehydrogenase (FDH); NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form.


Pssm-ID: 240627  Cd Length: 348  Bit Score: 168.66  E-value: 1.97e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  77 YHTISLSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNR 156
Cdd:cd05302    69 FHPAYMTAERIAKAKNLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILVRNYVPGHEQAIEGGW 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 157 aasveQIREVAGGAARIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPY-LPDGVERSLGLQRMATLQDLLMHSDCIT 235
Cdd:cd05302   149 -----NVADVVKRAYDLEGKTVGTVGAGRIGLRVLRRLKPFDVHLLYYDRHrLPEEVEKELGLTRHADLEDMVSKCDVVT 223
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 236 LHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPfSFSQGPLKDAPNLICTP 315
Cdd:cd05302   224 INCPLHPETEGLFNKELLSKMKKGAYLVNTARGKICDREAVAEALESGHLAGYAGDVWFPQP-APKDHPWRTMPNNAMTP 302

                  ..
gi 2019481537 316 HT 317
Cdd:cd05302   303 HI 304
HPPR cd12156
Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase; ...
82-333 2.22e-48

Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase; Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240633 [Multi-domain]  Cd Length: 301  Bit Score: 167.26  E-value: 2.22e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  82 LSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAasve 161
Cdd:cd12156    54 LSAALIAALPALELIASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRIPAADRFVRAGRWP---- 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 162 qiREVAGGAARIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYLPDGVerslGLQRMATLQDLLMHSDCITLHCSLN 241
Cdd:cd12156   130 --KGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGMEIAYHGRRPKPDV----PYRYYASLLELAAESDVLVVACPGG 203
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 242 EHNHHLINDFTIKQM-RQGcFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPfsfsQGP--LKDAPNLICTPHTA 318
Cdd:cd12156   204 PATRHLVNAEVLEALgPDG-VLVNVARGSVVDEAALIAALQEGRIAGAGLDVFENEP----NVPaaLLDLDNVVLTPHIA 278
                         250
                  ....*....|....*
gi 2019481537 319 wyseHASIESREEAA 333
Cdd:cd12156   279 ----SATVETRRAMG 289
PGDH_3 cd12176
Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate ...
82-316 9.62e-48

Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains; Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.


Pssm-ID: 240653  Cd Length: 304  Bit Score: 165.44  E-value: 9.62e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  82 LSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGnraasve 161
Cdd:cd12176    54 LTEEVLEAAPKLLAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIMLARRLPDRNAAAHRG------- 126
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 162 QIREVAGGAARIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYD--PYLPDGVERslglqRMATLQDLLMHSDCITLHCS 239
Cdd:cd12176   127 IWNKSATGSHEVRGKTLGIIGYGHIGSQLSVLAEALGMRVIFYDiaEKLPLGNAR-----QVSSLEELLAEADFVTLHVP 201
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 240 LNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFS----FSQgPLKDAPNLICTP 315
Cdd:cd12176   202 ATPSTKNMIGAEEIAQMKKGAILINASRGTVVDIDALAEALRSGHLAGAAVDVFPEEPASngepFSS-PLQGLPNVILTP 280

                  .
gi 2019481537 316 H 316
Cdd:cd12176   281 H 281
PRK06932 PRK06932
2-hydroxyacid dehydrogenase;
82-324 2.21e-47

2-hydroxyacid dehydrogenase;


Pssm-ID: 235890 [Multi-domain]  Cd Length: 314  Bit Score: 164.97  E-value: 2.21e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  82 LSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGnRAASVE 161
Cdd:PRK06932   55 FTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSD-RWATCK 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 162 QIREVAGGAARIRGETLGIIGLGRVGQAVALRAKAFGFAVIF---------YDPYLPdgverslglqrmatLQDLLMHSD 232
Cdd:PRK06932  134 QFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYaehkgasvcREGYTP--------------FEEVLKQAD 199
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 233 CITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSfSQGPL----KDA 308
Cdd:PRK06932  200 IVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPE-KDNPLiqaaKRL 278
                         250
                  ....*....|....*.
gi 2019481537 309 PNLICTPHTAWYSEHA 324
Cdd:PRK06932  279 PNLLITPHIAWASDSA 294
PRK07574 PRK07574
NAD-dependent formate dehydrogenase;
82-318 1.71e-46

NAD-dependent formate dehydrogenase;


Pssm-ID: 181041  Cd Length: 385  Bit Score: 164.46  E-value: 1.71e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  82 LSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREG--NRAAS 159
Cdd:PRK07574  104 LTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGgwNIADC 183
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 160 VEQIREvaggaarIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPY-LPDGVERSLGLQRMATLQDLLMHSDCITLHC 238
Cdd:PRK07574  184 VSRSYD-------LEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHrLPEEVEQELGLTYHVSFDSLVSVCDVVTIHC 256
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 239 SLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHesepfsFSQGPLKD-----APNLIC 313
Cdd:PRK07574  257 PLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVW------FPQPAPADhpwrtMPRNGM 330

                  ....*
gi 2019481537 314 TPHTA 318
Cdd:PRK07574  331 TPHIS 335
PTDH cd12157
Thermostable Phosphite Dehydrogenase; Phosphite dehydrogenase (PTDH), a member of the ...
59-340 2.42e-46

Thermostable Phosphite Dehydrogenase; Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain.


Pssm-ID: 240634 [Multi-domain]  Cd Length: 318  Bit Score: 162.46  E-value: 2.42e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  59 STQEIHEkVLSEAVGALMYHTISLSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHIL 138
Cdd:cd12157    34 SREELLR-RCKDADGLMAFMPDRIDADFLDACPRLKIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLI 112
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 139 NLYRRVTWLHQAMREGNRAAsveqiREVAGGAARIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPY-LPDGVERSLG 217
Cdd:cd12157   113 GLGRHILAGDRFVRSGKFGG-----WRPKFYGTGLDGKTVGILGMGALGRAIARRLSGFGATLLYYDPHpLDQAEEQALN 187
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 218 LQRMAtLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESE- 296
Cdd:cd12157   188 LRRVE-LDELLESSDFLVLALPLTPDTLHLINAEALAKMKPGALLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFEMEd 266
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|
gi 2019481537 297 ------PFSFSQGPLKDAPNLICTPHTAwysehasiesreEAAKEIRRAI 340
Cdd:cd12157   267 warpdrPRSIPQELLDQHDRTVFTPHIG------------SAVDEVRLEI 304
2-Hacid_dh_14 cd12179
Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; ...
84-336 8.56e-45

Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240656 [Multi-domain]  Cd Length: 306  Bit Score: 157.84  E-value: 8.56e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  84 REDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAM------REGNRA 157
Cdd:cd12179    54 KEFIEKATNLKFIARAGAGLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRADQEVrngiwdREGNRG 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 158 asVEqirevaggaarIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYLPDGVERSlglqRMATLQDLLMHSDCITLH 237
Cdd:cd12179   134 --VE-----------LMGKTVGIIGYGNMGKAFAKRLSGFGCKVIAYDKYKNFGDAYA----EQVSLETLFKEADILSLH 196
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 238 CSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSF---SQGP-----LKDAP 309
Cdd:cd12179   197 IPLTPETRGMVNKEFISSFKKPFYFINTARGKVVVTKDLVKALKSGKILGACLDVLEYEKASFesiFNQPeafeyLIKSP 276
                         250       260
                  ....*....|....*....|....*...
gi 2019481537 310 NLICTPHTA-WysehaSIESREEAAKEI 336
Cdd:cd12179   277 KVILTPHIAgW-----TFESYEKIAEVL 299
HGDH_like cd12184
(R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic ...
82-324 6.09e-43

(R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains; (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.


Pssm-ID: 240660  Cd Length: 330  Bit Score: 153.60  E-value: 6.09e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  82 LSREDLEKFKALRI--IIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWlhqamrEGNRAAS 159
Cdd:cd12184    56 ADKENLEIYKEYGIkyVFTRTVGFNHIDLEAAKELGFKMARVPSYSPNAIAELAFTLAMTLSRHTAY------TASRTAN 129
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 160 VEQIREVAGGAARIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYLPDGVERSLglqRMATLQDLLMHSDCITLHCS 239
Cdd:cd12184   130 KNFKVDPFMFSKEIRNSTVGIIGTGRIGLTAAKLFKGLGAKVIGYDIYPSDAAKDVV---TFVSLDELLKKSDIISLHVP 206
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 240 -LNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDV--HESEPF--SFSQGPLKDA------ 308
Cdd:cd12184   207 yIKGKNDKLINKEFISKMKDGAILINTARGELQDEEAILEALESGKLAGFGTDVlnNEKEIFfkDFDGDKIEDPvvekll 286
                         250
                  ....*....|....*....
gi 2019481537 309 ---PNLICTPHTAWYSEHA 324
Cdd:cd12184   287 dlyPRVLLTPHIGSYTDEA 305
2-Hacid_dh_6 cd12165
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
84-346 9.44e-43

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240642 [Multi-domain]  Cd Length: 314  Bit Score: 152.78  E-value: 9.44e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  84 REDLEKFKALRIIIRIGSGYDNIDIKSAAEmGIAVCNVP--SSSVEETAdstLCHILNLYRRVTWLHQAMREGN---RAA 158
Cdd:cd12165    52 EEALAALKRLKLIQVPSAGVDHLPLERLPE-GVVVANNHgnSPAVAEHA---LALILALAKRIVEYDNDLRRGIwhgRAG 127
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 159 SVEQIREvaggaarIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYD--PYLPDGVERSLGlqrMATLQDLLMHSDCITL 236
Cdd:cd12165   128 EEPESKE-------LRGKTVGILGYGHIGREIARLLKAFGMRVIGVSrsPKEDEGADFVGT---LSDLDEALEQADVVVV 197
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 237 HCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDV--------HESEPFSFsqgPLKDA 308
Cdd:cd12165   198 ALPLTKQTRGLIGAAELAAMKPGAILVNVGRGPVVDEEALYEALKERPIAGAAIDVwwrypsrgDPVAPSRY---PFHEL 274
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 2019481537 309 PNLICTPHTAWYSEHASIESREEAAKEIRRAITGPIPD 346
Cdd:cd12165   275 PNVIMSPHNAGWTEETFRRRIDEAAENIRRYLRGEPLL 312
PRK11790 PRK11790
phosphoglycerate dehydrogenase;
82-316 1.59e-41

phosphoglycerate dehydrogenase;


Pssm-ID: 236985 [Multi-domain]  Cd Length: 409  Bit Score: 151.87  E-value: 1.59e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  82 LSREDLEKFKALriiIRIGS---GYDNIDIKSAAEMGIAVCNVPSS---SVEETAdstLCHILNLYRRVTWLHQAMREGN 155
Cdd:PRK11790   65 LTEEVLAAAEKL---VAIGCfciGTNQVDLDAAAKRGIPVFNAPFSntrSVAELV---IGEIILLLRGIPEKNAKAHRGG 138
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 156 RAASveqirevAGGAARIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDpylpdgVERSLGL---QRMATLQDLLMHSD 232
Cdd:PRK11790  139 WNKS-------AAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYD------IEDKLPLgnaRQVGSLEELLAQSD 205
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 233 CITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSFSQG---PLKDAP 309
Cdd:PRK11790  206 VVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPfesPLRGLD 285

                  ....*..
gi 2019481537 310 NLICTPH 316
Cdd:PRK11790  286 NVILTPH 292
2-Hacid_dh_8 cd12167
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
82-361 6.98e-41

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240644 [Multi-domain]  Cd Length: 330  Bit Score: 148.09  E-value: 6.98e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  82 LSREDLEKFKALRIIIRI-GSGYDNIDiKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRaasv 160
Cdd:cd12167    62 LDAELLARAPRLRAVVHAaGSVRGLVT-DAVWERGILVTSAADANAEPVAEFTLAAILLALRRIPRFAAAYRAGRD---- 136
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 161 eQIREVAGGAARIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYLPDGVERSLGLqRMATLQDLLMHSDCITLHCSL 240
Cdd:cd12167   137 -WGWPTRRGGRGLYGRTVGIVGFGRIGRAVVELLRPFGLRVLVYDPYLPAAEAAALGV-ELVSLDELLARSDVVSLHAPL 214
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 241 NEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRgAALDVHESEPFSFSQgPLKDAPNLICTPHTA-- 318
Cdd:cd12167   215 TPETRGMIDARLLALMRDGATFINTARGALVDEAALLAELRSGRLR-AALDVTDPEPLPPDS-PLRTLPNVLLTPHIAgs 292
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 2019481537 319 WYSEHASIEsrEEAAKEIRRAITGpipDALKNCVNKEYLLAAA 361
Cdd:cd12167   293 TGDERRRLG--DYALDELERFLAG---EPLLHEVTPERLARMA 330
2-Hacid_dh_1 cd05300
Putative D-isomer specific 2-hydroxyacid dehydrogenase; 2-Hydroxyacid dehydrogenases catalyze ...
83-355 4.65e-38

Putative D-isomer specific 2-hydroxyacid dehydrogenase; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants.


Pssm-ID: 240625 [Multi-domain]  Cd Length: 313  Bit Score: 139.96  E-value: 4.65e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  83 SREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNvpSSSV--EETADSTLCHILNLYRRVTWLHQAMREgNRAASV 160
Cdd:cd05300    50 LPELLPAAPRLRWIQSTSAGVDALLFPELLERDVVLTN--ARGIfgPPIAEYVLGYMLAFARKLPRYARNQAE-RRWQRR 126
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 161 EQIREvaggaarIRGETLGIIGLGRVGQAVALRAKAFGFAVIfydpylpdGVERSLG--------LQRMATLQDLLMHSD 232
Cdd:cd05300   127 GPVRE-------LAGKTVLIVGLGDIGREIARRAKAFGMRVI--------GVRRSGRpappvvdeVYTPDELDELLPEAD 191
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 233 CITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSfSQGPLKDAPNLI 312
Cdd:cd05300   192 YVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDEDALIEALESGRIAGAALDVFEEEPLP-ADSPLWDLPNVI 270
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*...
gi 2019481537 313 CTPHTAWYSEHasieSREEAAkEI-----RRAITGpipDALKNCVNKE 355
Cdd:cd05300   271 ITPHISGDSPS----YPERVV-EIflenlRRYLAG---EPLLNVVDKD 310
ErythrP_dh cd12158
D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains; ...
99-321 5.33e-38

D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains; D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.


Pssm-ID: 240635 [Multi-domain]  Cd Length: 343  Bit Score: 140.74  E-value: 5.33e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  99 IGS---GYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLhqamregnraasveqirevaggaarIRG 175
Cdd:cd12158    61 VGTatiGTDHIDTDYLKERGIGFANAPGCNANSVAEYVLSALLVLAQRQGFS-------------------------LKG 115
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 176 ETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYLpdgvERSLGLQRMATLQDLLMHSDCITLHCSLNEH----NHHLINDF 251
Cdd:cd12158   116 KTVGIVGVGNVGSRLARRLEALGMNVLLCDPPR----AEAEGDPGFVSLEELLAEADIITLHVPLTRDgehpTYHLLDED 191
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 252 TIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPfSFSQGPLKDApnLICTPHTAWYS 321
Cdd:cd12158   192 FLAALKPGQILINASRGAVIDNQALLALLQRGKDLRVVLDVWENEP-EIDLELLDKV--DIATPHIAGYS 258
PRK15409 PRK15409
glyoxylate/hydroxypyruvate reductase GhrB;
60-353 3.85e-37

glyoxylate/hydroxypyruvate reductase GhrB;


Pssm-ID: 185307  Cd Length: 323  Bit Score: 137.96  E-value: 3.85e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  60 TQEIHEKVLSEAVGaLMYHTISLSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILN 139
Cdd:PRK15409   35 TVEQHAAAFAEAEG-LLGSGEKVDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLS 113
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 140 LYRRVTWLHQAMREGNRAASVeqirevagGAA----RIRGETLGIIGLGRVGQAVALRAKaFGFAV-IFYDPYLP-DGVE 213
Cdd:PRK15409  114 TARRVVEVAERVKAGEWTASI--------GPDwfgtDVHHKTLGIVGMGRIGMALAQRAH-FGFNMpILYNARRHhKEAE 184
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 214 RSLGlQRMATLQDLLMHSD--CITLhcSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALD 291
Cdd:PRK15409  185 ERFN-ARYCDLDTLLQESDfvCIIL--PLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLD 261
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2019481537 292 VHESEPFSFSQgPLKDAPNLICTPHTAwyseHASIESR----EEAAKEIRRAITGPIPdalKNCVN 353
Cdd:PRK15409  262 VFEQEPLSVDS-PLLSLPNVVAVPHIG----SATHETRynmaACAVDNLIDALQGKVE---KNCVN 319
PRK08605 PRK08605
D-lactate dehydrogenase; Validated
101-324 8.21e-37

D-lactate dehydrogenase; Validated


Pssm-ID: 181499  Cd Length: 332  Bit Score: 137.18  E-value: 8.21e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 101 SGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAASVEQIREVaggaarIRGETLGI 180
Cdd:PRK08605   78 AGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRS------IKDLKVAV 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 181 IGLGRVGQAVA-LRAKAFGFAVIFYDPYLPDGVERSLGLQRmaTLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQG 259
Cdd:PRK08605  152 IGTGRIGLAVAkIFAKGYGSDVVAYDPFPNAKAATYVDYKD--TIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKG 229
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2019481537 260 CFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESE----PFSFSQGPLKDA--------PNLICTPHTAWYSEHA 324
Cdd:PRK08605  230 AVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFErplfPSDQRGQTINDPlleslinrEDVILTPHIAFYTDAA 306
PGDH_1 cd12155
Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family; Phosphoglycerate ...
86-323 3.43e-35

Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family; Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240632 [Multi-domain]  Cd Length: 314  Bit Score: 132.32  E-value: 3.43e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  86 DLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCN------VPsssveeTADSTLCHILNLYRRvtwLHQAMRegNRAAS 159
Cdd:cd12155    54 DLAKMKNLKWIQLYSAGVDYLPLEYIKKKGILLTNnsgihsIP------IAEWIVGYILEIYKG---LKKAYK--NQKEK 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 160 VEQIREvagGAARIRGETLGIIGLGRVGQAVALRAKAFGFAVIfydpylpdGVERS----LGLQRMATLQDL---LMHSD 232
Cdd:cd12155   123 KWKMDS---SLLELYGKTILFLGTGSIGQEIAKRLKAFGMKVI--------GVNTSgrdvEYFDKCYPLEELdevLKEAD 191
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 233 CITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSfSQGPLKDAPNLI 312
Cdd:cd12155   192 IVVNVLPLTEETHHLFDEAFFEQMKKGALFINVGRGPSVDEDALIEALKNKQIRGAALDVFEEEPLP-KDSPLWDLDNVL 270
                         250
                  ....*....|.
gi 2019481537 313 CTPHTAWYSEH 323
Cdd:cd12155   271 ITPHISGVSEH 281
PLN02928 PLN02928
oxidoreductase family protein
81-349 1.85e-32

oxidoreductase family protein


Pssm-ID: 215501  Cd Length: 347  Bit Score: 125.95  E-value: 1.85e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  81 SLSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSS---SVEETADSTLCHILNLYRRvtwlHQAMregnrA 157
Cdd:PLN02928   71 RLDADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEgtgNAASCAEMAIYLMLGLLRK----QNEM-----Q 141
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 158 ASVEQIREVAGGAARIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYLPDGVERSLGLQRMAT------------LQ 225
Cdd:PLN02928  142 ISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVddlvdekgghedIY 221
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 226 DLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSFSQgPL 305
Cdd:PLN02928  222 EFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDD-PI 300
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 2019481537 306 KDAPNLICTPHTAWYSEHASIESREEAAKEIRRAITGPIPDALK 349
Cdd:PLN02928  301 LKHPNVIITPHVAGVTEYSYRSMGKIVGDAALQLHAGRPLTGIE 344
2-Hacid_dh_15 cd12180
Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; ...
171-322 3.40e-32

Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240657  Cd Length: 308  Bit Score: 123.99  E-value: 3.40e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 171 ARIRGETLGIIGLGRVGQAVALRAKAFGFAVI-FYDPYLPDGVErslGLQRMATLQDLLMHSDCITLHCSLNEHNHHLIN 249
Cdd:cd12180   131 GSLAGSTLGIVGFGAIGQALARRALALGMRVLaLRRSGRPSDVP---GVEAAADLAELFARSDHLVLAAPLTPETRHLIN 207
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2019481537 250 DFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSfSQGPLKDAPNLICTPHTAWYSE 322
Cdd:cd12180   208 ADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRISLASLDVTDPEPLP-EGHPLYTHPRVRLSPHTSAIAP 279
PLN02306 PLN02306
hydroxypyruvate reductase
24-333 2.69e-31

hydroxypyruvate reductase


Pssm-ID: 177941  Cd Length: 386  Bit Score: 123.43  E-value: 2.69e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  24 PMPVRPLVALLDGRDCTVEMPILKD----VATVAF-----CDAQSTQeihekvLSEAVGALMYHtiSLSREDLEKFKALR 94
Cdd:PLN02306   23 PMPGTRWINLLVDQDCRVEICTEKKtilsVEDIIAligdkCDGVIGQ------LTEDWGETLFS--ALSKAGGKAFSNMA 94
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  95 IiirigsGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAASVEQIreVAGGAarIR 174
Cdd:PLN02306   95 V------GYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHL--FVGNL--LK 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 175 GETLGIIGLGRVGQAVA-LRAKAFGFAVIFYDPY---------------LPDGVERSLGLQRMATLQDLLMHSDCITLHC 238
Cdd:PLN02306  165 GQTVGVIGAGRIGSAYArMMVEGFKMNLIYYDLYqstrlekfvtaygqfLKANGEQPVTWKRASSMEEVLREADVISLHP 244
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 239 SLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPfsFSQGPLKDAPNLICTPHTA 318
Cdd:PLN02306  245 VLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEP--YMKPGLADMKNAVVVPHIA 322
                         330
                  ....*....|....*
gi 2019481537 319 wyseHASIESREEAA 333
Cdd:PLN02306  323 ----SASKWTREGMA 333
PLN03139 PLN03139
formate dehydrogenase; Provisional
77-318 3.29e-30

formate dehydrogenase; Provisional


Pssm-ID: 178684  Cd Length: 386  Bit Score: 120.34  E-value: 3.29e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  77 YHTISLSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNR 156
Cdd:PLN03139  106 FHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEW 185
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 157 aasveqirEVAGGAAR---IRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPY-LPDGVERSLGLQRMATLQDLLMHSD 232
Cdd:PLN03139  186 --------NVAGIAYRaydLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLkMDPELEKETGAKFEEDLDAMLPKCD 257
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 233 CITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSfSQGPLKDAPNLI 312
Cdd:PLN03139  258 VVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAP-KDHPWRYMPNHA 336

                  ....*.
gi 2019481537 313 CTPHTA 318
Cdd:PLN03139  337 MTPHIS 342
PRK12480 PRK12480
D-lactate dehydrogenase; Provisional
87-324 1.50e-28

D-lactate dehydrogenase; Provisional


Pssm-ID: 183550  Cd Length: 330  Bit Score: 114.63  E-value: 1.50e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  87 LEKFKALRIIIRIgSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLYRRVTWLHQAMREGNRAASVEQIrev 166
Cdd:PRK12480   65 LESYGIKQIAQRT-AGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIM--- 140
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 167 aggAARIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPYLPDGVERslgLQRMATLQDLLMHSDCITLHCSLNEHNHH 246
Cdd:PRK12480  141 ---SKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF---LTYKDSVKEAIKDADIISLHVPANKESYH 214
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 247 LINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESE----PFSFSQGPLKDA--------PNLICT 314
Cdd:PRK12480  215 LFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEaayfTNDWTNKDIDDKtlleliehERILVT 294
                         250
                  ....*....|
gi 2019481537 315 PHTAWYSEHA 324
Cdd:PRK12480  295 PHIAFFSDEA 304
GDH_like_2 cd12164
Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy ...
85-347 2.34e-25

Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family; This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240641 [Multi-domain]  Cd Length: 306  Bit Score: 105.27  E-value: 2.34e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  85 EDLEKFKALRIIIRIGSGYDNIDIKSAAEmGIAVCN-VPSSSVEETADSTLCHILNLYRRVTwlhqAMREGNRAASVEQI 163
Cdd:cd12164    51 GLLARLPNLKAIFSLGAGVDHLLADPDLP-DVPIVRlVDPGLAQGMAEYVLAAVLRLHRDMD----RYAAQQRRGVWKPL 125
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 164 REVAGGAARIrgetlGIIGLGRVGQAVALRAKAFGFAVIFYD--PYLPDGVERSLGlqrMATLQDLLMHSDciTLHC--S 239
Cdd:cd12164   126 PQRPAAERRV-----GVLGLGELGAAVARRLAALGFPVSGWSrsPKDIEGVTCFHG---EEGLDAFLAQTD--ILVCllP 195
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 240 LNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSfSQGPLKDAPNLICTPHTaw 319
Cdd:cd12164   196 LTPETRGILNAELLARLPRGAALINVGRGPHLVEADLLAALDSGHLSGAVLDVFEQEPLP-ADHPLWRHPRVTVTPHI-- 272
                         250       260       270
                  ....*....|....*....|....*....|...
gi 2019481537 320 ysehASIESREEAAKEIRRAI-----TGPIPDA 347
Cdd:cd12164   273 ----AAITDPDSAAAQVAENIrrleaGEPLPNL 301
PRK00257 PRK00257
4-phosphoerythronate dehydrogenase PdxB;
102-341 1.75e-21

4-phosphoerythronate dehydrogenase PdxB;


Pssm-ID: 166874 [Multi-domain]  Cd Length: 381  Bit Score: 95.49  E-value: 1.75e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 102 GYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLyrrvtwlhqAMREGnraasveqirevaggaARIRGETLGII 181
Cdd:PRK00257   68 GTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTL---------AEREG----------------VDLAERTYGVV 122
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 182 GLGRVGQAVALRAKAFGFAVIFYDPylPDgvERSLGLQRMATLQDLLMHSDCITLHCSLN-EHNH---HLINDFTIKQMR 257
Cdd:PRK00257  123 GAGHVGGRLVRVLRGLGWKVLVCDP--PR--QEAEGDGDFVSLERILEECDVISLHTPLTkEGEHptrHLLDEAFLASLR 198
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 258 QGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPfsfsQGPLKDAPN-LICTPHTAWYsehaSIESREEAAKEI 336
Cdd:PRK00257  199 PGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEP----QIDLELADLcTIATPHIAGY----SLDGKARGTAQI 270

                  ....*
gi 2019481537 337 RRAIT 341
Cdd:PRK00257  271 YQALC 275
2-Hacid_dh_3 cd12160
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
130-318 4.48e-21

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240637  Cd Length: 310  Bit Score: 93.21  E-value: 4.48e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 130 ADSTLCHILNLYRRVTWLHQAMREG--NRAASVEQIREVAGGAARIRGETLGIIGLGRVGQAVALRAKAFGFAVIfydpy 207
Cdd:cd12160    96 AEHTLALILAAVRRLDEMREAQREHrwAGELGGLQPLRPAGRLTTLLGARVLIWGFGSIGQRLAPLLTALGARVT----- 170
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 208 lpdGVERSLGlQRM-------ATLQDLLMHSDCITLHCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQAL 280
Cdd:cd12160   171 ---GVARSAG-ERAgfpvvaeDELPELLPETDVLVMILPATPSTAHALDAEVLAALPKHAWVVNVGRGATVDEDALVAAL 246
                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 2019481537 281 KDGRIRGAALDVHESEPFSFSQgPLKDAPNLICTPHTA 318
Cdd:cd12160   247 ESGRLGGAALDVTATEPLPASS-PLWDAPNLILTPHAA 283
2-Hacid_dh_2 cd12159
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
173-318 6.86e-21

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240636  Cd Length: 303  Bit Score: 92.33  E-value: 6.86e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 173 IRGETLGIIGLGRVGQAVALRAKAFGFAVIFYD--PYLPDGVERSLglqRMATLQDLLMHSDCITLHCSLNEHNHHLIND 250
Cdd:cd12159   123 LRGSTVAIVGAGGIGRALIPLLAPFGAKVIAVNrsGRPVEGADETV---PADRLDEVWPDADHVVLAAPLTPETRHLVDA 199
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2019481537 251 FTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPfsFSQG-PLKDAPNLICTPHTA 318
Cdd:cd12159   200 AALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAGAALDVTDPEP--LPDGhPLWSLPNALITPHVA 266
2-Hacid_dh_7 cd12166
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
84-342 1.37e-18

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240643 [Multi-domain]  Cd Length: 300  Bit Score: 85.72  E-value: 1.37e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  84 REDLEKFKALRIIIRIGSGYDNIdIKSAAEmGIAVCN---VPSSSveeTADSTLCHILNLYRRVTWLHQAMREGNRAasv 160
Cdd:cd12166    52 LEALRALPRLRVVQTLSAGYDGV-LPLLPE-GVTLCNargVHDAS---TAELAVALILASLRGLPRFVRAQARGRWE--- 123
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 161 eqiREVAGGAArirGETLGIIGLGRVGQAVALRAKAFGFAVIfydpylpdGVERS----LGLQRMATLQDLLMHSDCITL 236
Cdd:cd12166   124 ---PRRTPSLA---DRRVLIVGYGSIGRAIERRLAPFEVRVT--------RVARTarpgEQVHGIDELPALLPEADVVVL 189
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 237 HCSLNEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRgAALDVHESEPfsFSQG-PLKDAPNLICTP 315
Cdd:cd12166   190 IVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDALVAELASGRLR-AALDVTDPEP--LPPGhPLWSAPGVLITP 266
                         250       260
                  ....*....|....*....|....*....
gi 2019481537 316 HTAWYSehASIESREEA--AKEIRRAITG 342
Cdd:cd12166   267 HVGGAT--PAFLPRAYAlvRRQLRRYAAG 293
2-Hacid_dh_5 cd12163
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
174-323 1.51e-18

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240640  Cd Length: 334  Bit Score: 86.17  E-value: 1.51e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 174 RGETLGIIGLGRVGQAVALRAKAFGFAVIFY-------------DPYL------PDGVERSL---GLQRmATLQDLL-MH 230
Cdd:cd12163   132 VGKRVGILGYGSIGRQTARLAQALGMEVYAYtrsprptpesrkdDGYIvpgtgdPDGSIPSAwfsGTDK-ASLHEFLrQD 210
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 231 SDCITLHCSLNEHNHHLIN--DFTIKQMRqGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSfSQGPLKDA 308
Cdd:cd12163   211 LDLLVVSLPLTPATKHLLGaeEFEILAKR-KTFVSNIARGSLVDTDALVAALESGQIRGAALDVTDPEPLP-ADHPLWSA 288
                         170
                  ....*....|....*
gi 2019481537 309 PNLICTPHTAWYSEH 323
Cdd:cd12163   289 PNVIITPHVSWQTQE 303
2-Hacid_dh_9 cd12170
Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze ...
58-324 1.70e-15

Putative D-isomer specific 2-hydroxyacid dehydrogenases; 2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.


Pssm-ID: 240647 [Multi-domain]  Cd Length: 294  Bit Score: 76.57  E-value: 1.70e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  58 QSTQEIHEKVlSEAVGALMYHTISLSREDLEKFKALRIIIRIGSGYD----NIDIKSAAEMGIAVCNVPS---SSVEETA 130
Cdd:cd12170    35 ESDEEIIERI-GDADCVLVSYTTQIDEEVLEACPNIKYIGMCCSLYSeesaNVDIAAARENGITVTGIRDygdEGVVEYV 113
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 131 DSTLCHILNLYRRVTWLHQAMRegnraasveqirevaggaarIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYD-PYLP 209
Cdd:cd12170   114 ISELIRLLHGFGGKQWKEEPRE--------------------LTGLKVGIIGLGTTGQMIADALSFFGADVYYYSrTRKP 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 210 DGVERSLglqRMATLQDLLMHSDCITLHcsLNEhNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGrirGAA 289
Cdd:cd12170   174 DAEAKGI---RYLPLNELLKTVDVICTC--LPK-NVILLGEEEFELLGDGKILFNTSLGPSFEVEALKKWLKAS---GYN 244
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2019481537 290 LDVHESEPfSFSQGPLKDAPNLICTPHTAWYSEHA 324
Cdd:cd12170   245 IFDCDTAG-ALGDEELLRYPNVICTNKSAGWTRQA 278
PRK15438 PRK15438
erythronate-4-phosphate dehydrogenase PdxB; Provisional
74-321 5.41e-14

erythronate-4-phosphate dehydrogenase PdxB; Provisional


Pssm-ID: 185335 [Multi-domain]  Cd Length: 378  Bit Score: 73.02  E-value: 5.41e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  74 ALMYHTISLSREDLEKFKALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETADSTLCHILNLyrrvtwlhqAMRE 153
Cdd:PRK15438   40 ALMVRSVTKVNESLLAGKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLML---------AERD 110
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 154 GnraasveqirevaggaARIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPylPDGVERSLGLQRmaTLQDLLMHSDC 233
Cdd:PRK15438  111 G----------------FSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDP--PRADRGDEGDFR--SLDELVQEADI 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 234 ITLHCSLNEHNH----HLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPfSFSQGPLKDAP 309
Cdd:PRK15438  171 LTFHTPLFKDGPyktlHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEP-ELNVELLKKVD 249
                         250
                  ....*....|..
gi 2019481537 310 nlICTPHTAWYS 321
Cdd:PRK15438  250 --IGTPHIAGYT 259
PRK06436 PRK06436
2-hydroxyacid dehydrogenase;
91-318 1.16e-12

2-hydroxyacid dehydrogenase;


Pssm-ID: 235800 [Multi-domain]  Cd Length: 303  Bit Score: 68.37  E-value: 1.16e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  91 KALRIIIRIGSGYDNIDIKSAAEMGIAVCNVP--SSSVEETADSTLchiLNLYRRVTWLHQAMREGNRAASVEQIrevag 168
Cdd:PRK06436   48 KKTKMIQSLSAGVDHIDVSGIPENVVLCSNAGaySISVAEHAFALL---LAWAKNICENNYNMKNGNFKQSPTKL----- 119
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 169 gaarIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYD-PYLPDGVERSlglqrMATLQDLLMHSDCITLHCSLNEHNHHL 247
Cdd:PRK06436  120 ----LYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTrSYVNDGISSI-----YMEPEDIMKKSDFVLISLPLTDETRGM 190
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2019481537 248 INDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSFSQGPlkdaPNLICTPHTA 318
Cdd:PRK06436  191 INSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNP----DNVILSPHVA 257
FDH_GDH_like cd12154
Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related ...
86-311 7.18e-12

Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases; The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases.


Pssm-ID: 240631 [Multi-domain]  Cd Length: 310  Bit Score: 66.10  E-value: 7.18e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  86 DLEKFKALRIIIRIGSGYDNIDIKSA-AEMGIAVCNVPSSSVEETADStlchiLNLYRRvtwlhQAMREGNRAASVeQIR 164
Cdd:cd12154    81 ALIQKLGDRLLFTYTIGADHRDLTEAlARAGLTAIAVEGVELPLLTSN-----SIGAGE-----LSVQFIARFLEV-QQP 149
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 165 EVAGGAARIRGETLGIIGLGRVGQAVALRAKAFGFAVIFYDPyLPDGVE--RSLGLQRMATLQDLLMHSDCITLHCSLNE 242
Cdd:cd12154   150 GRLGGAPDVAGKTVVVVGAGVVGKEAAQMLRGLGAQVLITDI-NVEALEqlEELGGKNVEELEEALAEADVIVTTTLLPG 228
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2019481537 243 HNHHLINDFT-IKQMRQGCFLVNTARG-GLVDEKALAQALKDGRIRGAALDVHESEPFSFSQGPLKDAPNL 311
Cdd:cd12154   229 KRAGILVPEElVEQMKPGSVIVNVAVGaVGCVQALHTQLLEEGHGVVHYGDVNMPGPGCAMGVPWDATLRL 299
ghrA PRK15469
glyoxylate/hydroxypyruvate reductase GhrA;
91-341 6.78e-10

glyoxylate/hydroxypyruvate reductase GhrA;


Pssm-ID: 185366  Cd Length: 312  Bit Score: 59.81  E-value: 6.78e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537  91 KALRIIIRIGSGYDNIDIKSAAEMGIAVCNVPSSSVEETA------DSTLCHILNLYRRVTwLHQAMREGNRAASVEQIR 164
Cdd:PRK15469   55 RDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGmgeqmqEYAVSQVLHWFRRFD-DYQALQNSSHWQPLPEYH 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 165 evaggaariRGE-TLGIIGLGRVGQAVALRAKAFGFAVIFYD---PYLPdGVERSLG-------LQRMATLQDLLMHSdc 233
Cdd:PRK15469  134 ---------REDfTIGILGAGVLGSKVAQSLQTWGFPLRCWSrsrKSWP-GVQSFAGreelsafLSQTRVLINLLPNT-- 201
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2019481537 234 itlhcslnEHNHHLINDFTIKQMRQGCFLVNTARGGLVDEKALAQALKDGRIRGAALDVHESEPFSfSQGPLKDAPNLIC 313
Cdd:PRK15469  202 --------PETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLP-PESPLWQHPRVAI 272
                         250       260
                  ....*....|....*....|....*...
gi 2019481537 314 TPHTawysehASIESREEAAKEIRRAIT 341
Cdd:PRK15469  273 TPHV------AAVTRPAEAVEYISRTIA 294
PRK09599 PRK09599
NADP-dependent phosphogluconate dehydrogenase;
178-228 4.38e-03

NADP-dependent phosphogluconate dehydrogenase;


Pssm-ID: 236582 [Multi-domain]  Cd Length: 301  Bit Score: 38.96  E-value: 4.38e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2019481537 178 LGIIGLGRVGQAVALRAKAFGFAVIFYDPYlPDGVER--SLGLQRMATLQDLL 228
Cdd:PRK09599    3 LGMIGLGRMGGNMARRLLRGGHEVVGYDRN-PEAVEAlaEEGATGADSLEELV 54
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH