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Conserved domains on  [gi|1958776740|ref|XP_038965998|]
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microfibrillar-associated protein 2 isoform X1 [Rattus norvegicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MAGP super family cl05196
Microfibril-associated glycoprotein (MAGP); This family consists of several mammalian ...
 135-221 1.05e-39

Microfibril-associated glycoprotein (MAGP); This family consists of several mammalian microfibril-associated glycoprotein (MAGP) 1 and 2 proteins. MAGP1 and 2 are components of elastic fibres. MAGP-1 has been proposed to bind a C-terminal region of tropoelastin, the soluble precursor of elastin. MAGP-2 was found to interact with fibrillin-1 and -2, as well as fibulin-1, another component of elastic fibres this suggests that MAGP-2 may be important in the assembly of microfibrils.


The actual alignment was detected with superfamily member pfam05507:

Pssm-ID: 461667  Cd Length: 137  Bit Score: 133.84  E-value: 1.05e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776740 135 EVIPAPT-PELPAAGDQDTEPTEPGPLD----------CREEQYPCTRLYSIHKPCKQCLNEVCFYSLRRVYVVNKEICV 203
Cdd:pfam05507  40 TFTDDPNlVNDPPTDETVLADIEPSTDDlassnnataeCREEQFPCTRLYSVHRPVKQCLHQLCFTSLRRMYIINKEICS 119

                          90
                  ....*....|....*...
gi 1958776740 204 RTVCAHEELLRADLCRDK 221
Cdd:pfam05507 120 RLVCKEHEAMKDELCRQM 137
 
Name Accession Description Interval E-value
MAGP pfam05507
Microfibril-associated glycoprotein (MAGP); This family consists of several mammalian ...
 135-221 1.05e-39

Microfibril-associated glycoprotein (MAGP); This family consists of several mammalian microfibril-associated glycoprotein (MAGP) 1 and 2 proteins. MAGP1 and 2 are components of elastic fibres. MAGP-1 has been proposed to bind a C-terminal region of tropoelastin, the soluble precursor of elastin. MAGP-2 was found to interact with fibrillin-1 and -2, as well as fibulin-1, another component of elastic fibres this suggests that MAGP-2 may be important in the assembly of microfibrils.


Pssm-ID: 461667  Cd Length: 137  Bit Score: 133.84  E-value: 1.05e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776740 135 EVIPAPT-PELPAAGDQDTEPTEPGPLD----------CREEQYPCTRLYSIHKPCKQCLNEVCFYSLRRVYVVNKEICV 203
Cdd:pfam05507  40 TFTDDPNlVNDPPTDETVLADIEPSTDDlassnnataeCREEQFPCTRLYSVHRPVKQCLHQLCFTSLRRMYIINKEICS 119

                          90
                  ....*....|....*...
gi 1958776740 204 RTVCAHEELLRADLCRDK 221
Cdd:pfam05507 120 RLVCKEHEAMKDELCRQM 137
 
Name Accession Description Interval E-value
MAGP pfam05507
Microfibril-associated glycoprotein (MAGP); This family consists of several mammalian ...
 135-221 1.05e-39

Microfibril-associated glycoprotein (MAGP); This family consists of several mammalian microfibril-associated glycoprotein (MAGP) 1 and 2 proteins. MAGP1 and 2 are components of elastic fibres. MAGP-1 has been proposed to bind a C-terminal region of tropoelastin, the soluble precursor of elastin. MAGP-2 was found to interact with fibrillin-1 and -2, as well as fibulin-1, another component of elastic fibres this suggests that MAGP-2 may be important in the assembly of microfibrils.


Pssm-ID: 461667  Cd Length: 137  Bit Score: 133.84  E-value: 1.05e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1958776740 135 EVIPAPT-PELPAAGDQDTEPTEPGPLD----------CREEQYPCTRLYSIHKPCKQCLNEVCFYSLRRVYVVNKEICV 203
Cdd:pfam05507  40 TFTDDPNlVNDPPTDETVLADIEPSTDDlassnnataeCREEQFPCTRLYSVHRPVKQCLHQLCFTSLRRMYIINKEICS 119

                          90
                  ....*....|....*...
gi 1958776740 204 RTVCAHEELLRADLCRDK 221
Cdd:pfam05507 120 RLVCKEHEAMKDELCRQM 137
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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